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620
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Comment: Comment: Can we use exon- counts to calculate coverage?
7 months ago by unawaz ▴ 60
1
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3
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620
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Can we use exon- counts to calculate coverage?
rna-seq
7 months ago by unawaz ▴ 60
3
votes
1
reply
482
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How to get transcript coverage from Salmon output?
salmon RNAseq RSeQC transcriptome
updated 12 months ago by 100k • written 12 months ago by ▴ 60
0
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1
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31k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
updated 4.6 years ago by 43k • written 5.3 years ago by ▴ 60
1
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1
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31k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
updated 4.6 years ago by 43k • written 5.1 years ago by ▴ 60
1
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1
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43k
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Comment: C: ClusterProfiler : What is GeneRatio and BgRatio?
4.9 years ago by unawaz ▴ 60
0
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1
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40k
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Comment: C: Concatenating fastq.gz files across lanes
5.0 years ago by unawaz ▴ 60
0
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1
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31k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
5.3 years ago by unawaz ▴ 60
0
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1
reply
31k
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Comment: C: EnhancedVolcano: Publication-ready volcano plots with enhanced colouring and lab
5.3 years ago by unawaz ▴ 60
0
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0
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5.9k
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Comment: C: Differential expression: replicates in one condition, no replicates in the other
5.3 years ago by unawaz ▴ 60
0
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1
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2.0k
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Is it appropriate to apply RUVseq on output from kallisto?
RNA-Seq batch-correction kallisto
updated 8 days ago by 43k • written 5.3 years ago by ▴ 60
1
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1
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2.2k
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Comment: C: to get each covariate with PC loading in PCA
5.3 years ago by unawaz ▴ 60
11
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7
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3.9k
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6 follow
What's your preferred pathway enrichment analysis tool after DEG analysis and why?
gene ontology RNA-Seq
updated 5.3 years ago by 27k • written 5.3 years ago by ▴ 60
0
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0
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5.9k
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Answer: A: Differential expression: replicates in one condition, no replicates in the other
5.3 years ago by unawaz ▴ 60
0
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1
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1.2k
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Answer: A: RNA-Seq data analysis mapping to closest genome as reference genome
5.3 years ago by unawaz ▴ 60
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0
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1.6k
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Comment: C: Appropriate to apply RUVSeq to exon bin counts for DEXSeq?
5.3 years ago by unawaz ▴ 60
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0
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5.9k
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Comment: C: Is there a way to get the name or IDs of genes with the goseq table?
5.3 years ago by unawaz ▴ 60
8
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8
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5.9k
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6 follow
Is there a way to get the name or IDs of genes with the goseq table?
RNA-Seq gene ontology goseq
updated 14 months ago by • 0 • written 5.4 years ago by ▴ 60
1
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2
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2.8k
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How to make a gene expression correlation graph?
RNA-Seq R edgeR
updated 5.5 years ago by 35k • written 5.5 years ago by ▴ 60
0
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0
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2.1k
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Answer: A: Advice on running a differential expression analysis on patients with slightly d
5.6 years ago by unawaz ▴ 60
3
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4
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2.1k
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Advice on running a differential expression analysis on patients with slightly different mutations within each group
RNA-Seq differential expression edgeR deseq2
5.6 years ago by unawaz ▴ 60
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0
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2.1k
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Comment: C: Advice on running a differential expression analysis on patients with slightly d
5.6 years ago by unawaz ▴ 60
10
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4
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2.1k
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Low mapping percentage after mapping RNA-seq reads to a closely related species
RNA-Seq alignment genome
updated 5.9 years ago by 8.9k • written 6.0 years ago by ▴ 60
0
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0
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1.3k
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How to retain transcripts from blastx output at a given coverage?
assembly RNA-Seq BLASTX Trinity
6.2 years ago by unawaz ▴ 60
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