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2
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Answer: Answer: Filtering long indels from VCF
8 months ago by bari.ballew ▴ 460
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750
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Job: Two Bioinformatics positions (GWAS and NGS pipelines) @Cancer Genomics Research Lab, National Cancer Institute - MD, USA
phd gwas reproducibility next-gen
updated 10 months ago by 43k • written 3.5 years ago by ▴ 460
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Job: GWAS Bioinformatician at the Cancer Genomics Research Lab, National Cancer Institute - MD, USA
gwas assocation
updated 10 months ago by 43k • written 3.5 years ago by ▴ 460
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900
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Answer: A: Genotyping samples at a predetermined list of locations
3.7 years ago by bari.ballew ▴ 460
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4.3k
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Comment: C: GATK GenomicsDBImport - use list as input
3.7 years ago by bari.ballew ▴ 460
1
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4.3k
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Answer: A: GATK GenomicsDBImport - use list as input
3.7 years ago by bari.ballew ▴ 460
0
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718
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Comment: C: illumina variant interpreter vcf format version error
4.0 years ago by bari.ballew ▴ 460
1
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2.9k
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Answer: A: Rename Chromosome position/Notation in VCF file
4.0 years ago by bari.ballew ▴ 460
2
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972
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Answer: A: Identifying zygosity of somatic deletion
4.2 years ago by bari.ballew ▴ 460
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1.5k
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Answer: A: Are there any issues with using sample reads coming from different technologies
4.2 years ago by bari.ballew ▴ 460
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1.2k
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Answer: A: Selecting set of SNPs using vcftools
4.6 years ago by bari.ballew ▴ 460
1
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3.7k
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Answer: A: Snakemake FastQC MissingOutputFiles ErrorM
4.6 years ago by bari.ballew ▴ 460
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1
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963
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Answer: A: Query regarding somatic variant calling
4.7 years ago by bari.ballew ▴ 460
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2.1k
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Answer: A: Removing white space from the beginning of the second field (sequence) in a fast
4.7 years ago by bari.ballew ▴ 460
2
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734
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Answer: A: Not call some variants in some populations?
4.7 years ago by bari.ballew ▴ 460
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0
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877
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Answer: A: Merging SNV and DIV vcfs of the same Individual
4.7 years ago by bari.ballew ▴ 460
3
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1.4k
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Answer: A: skipping column names using awk
4.7 years ago by bari.ballew ▴ 460
4
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1
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26k
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Answer: A: Best way to query VCF for specific variants
4.7 years ago by bari.ballew ▴ 460
18
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1
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19k
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Answer: A: VCF merge or concatenate?
4.8 years ago by bari.ballew ▴ 460
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1.3k
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Comment: A: MutSig2CV with self-generated "maf file:
4.8 years ago by bari.ballew ▴ 460
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1.8k
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Answer: A: Filter out low coverage and minor alleles of a frequency above 40%.
4.8 years ago by bari.ballew ▴ 460
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0
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1.3k
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Answer: A: Read .sample file (file format available in plink) as a dataframe in pandas
4.8 years ago by bari.ballew ▴ 460
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1.1k
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Answer: A: Matching mutation in bed files to their corresponding bam files
4.8 years ago by bari.ballew ▴ 460
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1
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1.8k
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Comment: A: Filter out low coverage and minor alleles of a frequency above 40%.
4.8 years ago by bari.ballew ▴ 460
1
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1.9k
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Answer: A: DeepVariant and Gene Panels
4.8 years ago by bari.ballew ▴ 460
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2.0k
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Answer: A: targets in a bed at or above a coverage
4.8 years ago by bari.ballew ▴ 460
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0
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1.2k
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Comment: C: varscan tool for copy number variation detection
4.8 years ago by bari.ballew ▴ 460
2
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3.7k
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Answer: A: snakemake wildcard for fastq files
4.9 years ago by bari.ballew ▴ 460
3
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3.2k
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Answer: A: Rename FASTA headers based on filename
4.9 years ago by bari.ballew ▴ 460
0
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0
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4.2k
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Comment: C: Looking For Approaches For Finding Contamination And Sample Identity Matching Is
4.9 years ago by bari.ballew ▴ 460
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2.2k
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Comment: C: MAF file having mutation data
5.0 years ago by bari.ballew ▴ 460
0
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1
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2.2k
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Comment: C: MAF file having mutation data
5.0 years ago by bari.ballew ▴ 460
0
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1
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2.2k
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Answer: A: MAF file having mutation data
5.0 years ago by bari.ballew ▴ 460
1
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0
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4.1k
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Answer: A: Downstream analysis of VCF files obtained from VarScan2
5.0 years ago by bari.ballew ▴ 460
4
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2.1k
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Answer: A: tool to detect large deletions
5.0 years ago by bari.ballew ▴ 460
1
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1
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1.7k
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Answer: A: From pooled fastq data to SNPs
6.2 years ago by bari.ballew ▴ 460
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