Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
0
votes
0
replies
289
views
Answer:
Answer: Find out shared differentially expressed genes between two cell lines due to kno
8 days ago by
swbarnes2
14k
0
votes
0
replies
252
views
Answer:
Answer: Detecting viruses in human rna seq data
9 days ago by
swbarnes2
14k
1
vote
1
reply
350
views
Answer:
Answer: Is it better to pool samples prior to running deseq2, or should the algorithm be
10 days ago by
swbarnes2
14k
2
votes
0
replies
446
views
Answer:
Answer: Overriding a color palette in R to emphasize specific data points
14 days ago by
swbarnes2
14k
0
votes
0
replies
486
views
Comment:
Comment: RNA_seq
14 days ago by
swbarnes2
14k
0
votes
1
reply
486
views
Answer:
Answer: RNA_seq
15 days ago by
swbarnes2
14k
1
vote
0
replies
304
views
Answer:
Answer: Is it feasible to merge Illumina RNA-Seq data with varying read lengths?
17 days ago by
swbarnes2
14k
2
votes
0
replies
330
views
Answer:
Answer: Re. Batch effect correction in data with a design matrix without full rank
20 days ago by
swbarnes2
14k
0
votes
1
reply
470
views
Answer:
Answer: RNA Seq Sample Outlier
20 days ago by
swbarnes2
14k
1
vote
1
reply
330
views
Answer:
Answer: STAR alignment setting for RNA-Seq data from mouse background expressing a human
22 days ago by
swbarnes2
14k
1
vote
1
reply
368
views
Answer:
Answer: (STAR) What causes a high number of reads that are unmapped because they are too
22 days ago by
swbarnes2
14k
2
votes
1
reply
269
views
Answer:
Answer: Single cell rna sequencing analysis using R help
23 days ago by
swbarnes2
14k
3
votes
0
replies
346
views
Answer:
Answer: single cell rna seq-how to DEG analyze??(full code & Dimplot added)
24 days ago by
swbarnes2
14k
1
vote
0
replies
227
views
Answer:
Answer: biological replicate in STAR command
4 weeks ago by
swbarnes2
14k
1
vote
0
replies
321
views
Answer:
Answer: PCA plot analysis
4 weeks ago by
swbarnes2
14k
0
votes
1
reply
402
views
Answer:
Answer: ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq
5 weeks ago by
swbarnes2
14k
2
votes
0
replies
279
views
Comment:
Comment: Getting less DE genes when incorporating all samples
6 weeks ago by
swbarnes2
14k
1
vote
0
replies
414
views
Comment:
Comment: Count table statistical analysis
6 weeks ago by
swbarnes2
14k
1
vote
1
reply
481
views
Comment:
Comment: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
7 weeks ago by
swbarnes2
14k
0
votes
0
replies
481
views
Answer:
Answer: Trouble Understanding DESeq2 Design Formula ("Model Matrix is not Full Rank")
7 weeks ago by
swbarnes2
14k
1
vote
0
replies
543
views
Comment:
Comment: Three fastq files
7 weeks ago by
swbarnes2
14k
0
votes
0
replies
433
views
Comment:
Comment: Differential gene expression design using Deseq2
7 weeks ago by
swbarnes2
14k
0
votes
1
reply
951
views
Comment:
Comment: Expression analysis of LncRNA from RNA-seq data
8 weeks ago by
swbarnes2
14k
0
votes
1
reply
951
views
Comment:
Comment: Expression analysis of LncRNA from RNA-seq data
8 weeks ago by
swbarnes2
14k
0
votes
0
replies
488
views
Answer:
Answer: Help interpreting Samtools Flagstat results
9 weeks ago by
swbarnes2
14k
0
votes
0
replies
370
views
Comment:
Comment: Running Deseq2 with all samples vs samples for each comparison separately
10 weeks ago by
swbarnes2
14k
0
votes
1
reply
370
views
Answer:
Answer: Running Deseq2 with all samples vs samples for each comparison separately
10 weeks ago by
swbarnes2
14k
0
votes
0
replies
586
views
Comment:
Comment: No tumour cells in clustering of tumor sample?!
11 weeks ago by
swbarnes2
14k
0
votes
0
replies
613
views
Comment:
Comment: DESeq2 heatmap with low baseMean values
11 weeks ago by
swbarnes2
14k
0
votes
1
reply
613
views
Comment:
Comment: DESeq2 heatmap with low baseMean values
11 weeks ago by
swbarnes2
14k
1
vote
0
replies
282
views
Answer:
Answer: Interpretation of output from MiXCR TCR sequencing
12 weeks ago by
swbarnes2
14k
0
votes
0
replies
325
views
Answer:
Answer: Strand information from reverse stranded RNA-seq
3 months ago by
swbarnes2
14k
0
votes
0
replies
548
views
Comment:
Comment: bcl2fastq problems with the yield
3 months ago by
swbarnes2
14k
0
votes
1
reply
548
views
Answer:
Answer: bcl2fastq problems with the yield
3 months ago by
swbarnes2
14k
1
vote
1
reply
594
views
Comment:
Comment: Running cellranger on multiple files when R1 and R2 fastqs are in multiple subfo
3 months ago by
swbarnes2
14k
1
vote
0
replies
423
views
Answer:
Answer: Are 10x cellranger-arc ATAC bam files deduplicated?
3 months ago by
swbarnes2
14k
1
vote
0
replies
356
views
Answer:
Answer: Bulk and Single Cell RNA-seq online course
3 months ago by
swbarnes2
14k
0
votes
0
replies
754
views
Answer:
Answer: STAR ALIGNMENT
4 months ago by
swbarnes2
14k
0
votes
0
replies
754
views
Comment:
Comment: STAR ALIGNMENT
4 months ago by
swbarnes2
14k
0
votes
1
reply
841
views
Answer:
Answer: Handling multiple fastq files per sample, per lane, per read out of the Cellrang
4 months ago by
swbarnes2
14k
0
votes
1
reply
756
views
Comment:
Comment: DESEQ2 design in DESeqDataSetFromMatrix: cell and treatment
4 months ago by
swbarnes2
14k
0
votes
0
replies
692
views
Answer:
Answer: RNAseq how to map Mouse+Virus Genome with STAR
4 months ago by
swbarnes2
14k
1
vote
0
replies
890
views
Comment:
Comment: deal with PCA and my samples
4 months ago by
swbarnes2
14k
2
votes
0
replies
679
views
Answer:
Answer: batch correction in DESeq2
4 months ago by
swbarnes2
14k
0
votes
1
reply
1.1k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
5 months ago by
swbarnes2
14k
1
vote
1
reply
1.1k
views
Comment:
Comment: Visualization of RNA-seq gene expression only one gene of interest between 2 con
5 months ago by
swbarnes2
14k
0
votes
1
reply
527
views
Comment:
Comment: I cannot obtain summary alignment with Bowtie2
5 months ago by
swbarnes2
14k
0
votes
0
replies
433
views
Answer:
Answer: Help with DESeq2 Analysis of Multiple Conditions
5 months ago by
swbarnes2
14k
0
votes
0
replies
691
views
Comment:
Comment: DESeq2: DESeqDataSetFromMatrix Error
5 months ago by
swbarnes2
14k
0
votes
1
reply
691
views
Answer:
Answer: DESeq2: DESeqDataSetFromMatrix Error
5 months ago by
swbarnes2
14k
1,980 results • Page
1 of 40
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6