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4
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Best practices for counting genes with nanopore RNAseq data
rna-seq nanopore alignment
updated 4.4 years ago by ▴ 10 • written 5.2 years ago by ▴ 90
0
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0
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987
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Comment: C: Use Salmon to annotate a Sam file
4.8 years ago by Florian Bernard ▴ 90
0
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2
replies
987
views
Use Salmon to annotate a Sam file
Salmon RNA-Seq alignment quantification
updated 4.8 years ago by 81k • written 4.8 years ago by ▴ 90
0
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1
reply
1.1k
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retrieve relative position of CDS start for every isoforme
rna isoforme
5.0 years ago by Florian Bernard ▴ 90
0
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0
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3.5k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
5.1 years ago by Florian Bernard ▴ 90
0
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0
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1.1k
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Comment: C: How to identify long reads coming from ligated cDNAs before sequencing ?
5.1 years ago by Florian Bernard ▴ 90
0
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1
reply
1.1k
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Comment: C: How to identify long reads coming from ligated cDNAs before sequencing ?
5.1 years ago by Florian Bernard ▴ 90
0
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4
replies
1.1k
views
How to identify long reads coming from ligated cDNAs before sequencing ?
minimap2 ONT nanopore alignment cDNA
5.1 years ago by Florian Bernard ▴ 90
0
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0
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3.5k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
5.2 years ago by Florian Bernard ▴ 90
0
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0
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3.5k
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Comment: C: Best practices for counting genes with nanopore RNAseq data
5.2 years ago by Florian Bernard ▴ 90
0
votes
1
reply
3.5k
views
Comment: C: Best practices for counting genes with nanopore RNAseq data
5.2 years ago by Florian Bernard ▴ 90
0
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1
reply
3.5k
views
Comment: C: Best practices for counting genes with nanopore RNAseq data
5.2 years ago by Florian Bernard ▴ 90
0
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0
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1.5k
views
Comment: C: How to find a specific sequence within noisy reads ?
5.5 years ago by Florian Bernard ▴ 90
1
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2
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1.5k
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How to find a specific sequence within noisy reads ?
nanopore RNA-Seq python sequence match
5.5 years ago by Florian Bernard ▴ 90
0
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0
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4.5k
views
Comment: C: filtering reads that are uniquely mapped
5.6 years ago by Florian Bernard ▴ 90
1
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1
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4.5k
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Comment: C: filtering reads that are uniquely mapped
5.6 years ago by Florian Bernard ▴ 90
0
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0
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4.5k
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Comment: C: filtering reads that are uniquely mapped
5.6 years ago by Florian Bernard ▴ 90
0
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1
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4.5k
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Comment: C: filtering reads that are uniquely mapped
5.6 years ago by Florian Bernard ▴ 90
6
votes
9
replies
4.5k
views
filtering reads that are uniquely mapped
alignment RNA-Seq samtools python
updated 5.6 years ago by 16k • written 5.6 years ago by ▴ 90
5
votes
12
replies
1.1k
views
Identifying covered genes from nanopore cDNA-seq reads
RNA-Seq gene alignment
updated 5.7 years ago by 47k • written 5.7 years ago by ▴ 90
0
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0
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1.1k
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Comment: C: extracting gene names for RNA-seq reads
5.7 years ago by Florian Bernard ▴ 90
0
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0
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1.1k
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Comment: C: extracting gene names for RNA-seq reads
5.7 years ago by Florian Bernard ▴ 90
1
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0
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1.1k
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Answer: A: extracting gene names for RNA-seq reads
5.7 years ago by Florian Bernard ▴ 90
0
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2
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1.1k
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Comment: C: extracting gene names for RNA-seq reads
5.7 years ago by Florian Bernard ▴ 90
1
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0
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1.1k
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Comment: C: extracting gene names for RNA-seq reads
5.7 years ago by Florian Bernard ▴ 90
0
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0
replies
1.1k
views
Comment: C: extracting gene names for RNA-seq reads
5.7 years ago by Florian Bernard ▴ 90
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