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1
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2
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592
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Liftedover vcf header/contig compatibility
crossmap
vcf
bcftools
liftover
contig
updated 8 months ago by
Giulio Genovese
▴ 390 • written 8 months ago by
Kermit
▴ 90
0
votes
0
replies
1.3k
views
Comment:
Comment: Retrieve only protein coding esnsemble gene ids and gene symbols
9 months ago by
Kermit
▴ 90
0
votes
0
replies
15k
views
Comment:
Comment: Mapping Ensembl Gene IDs with dot suffix
9 months ago by
Kermit
▴ 90
0
votes
0
replies
23k
views
Answer:
Answer: Convert Ensembl Transcript Ids Ensmust To Gene Symbol Using Mygene Module In Pyt
9 months ago by
Kermit
▴ 90
0
votes
0
replies
1.8k
views
Comment:
Comment: Quantify Isoforms in RNA-Seq data
9 months ago by
Kermit
▴ 90
0
votes
1
reply
1.8k
views
Comment:
Comment: Quantify Isoforms in RNA-Seq data
9 months ago by
Kermit
▴ 90
0
votes
1
reply
1.8k
views
Comment:
Comment: Quantify Isoforms in RNA-Seq data
9 months ago by
Kermit
▴ 90
0
votes
0
replies
3.0k
views
Comment:
Comment: STAR-Fusion: Problem in interpreting
9 months ago by
Kermit
▴ 90
0
votes
0
replies
4.8k
views
Comment:
Comment: Must paired-end reads be in the same order in the two files for input to Tophat?
9 months ago by
Kermit
▴ 90
0
votes
0
replies
32k
views
Comment:
Comment: Sjdboverhang Option In Star
9 months ago by
Kermit
▴ 90
0
votes
1
reply
1.8k
views
Comment:
Comment: bbsplit running slow or out of memory?
9 months ago by
Kermit
▴ 90
0
votes
1
reply
1.8k
views
Answer:
Answer: bbsplit running slow or out of memory?
9 months ago by
Kermit
▴ 90
0
votes
0
replies
36k
views
Comment:
Comment: How to know that your RNA-seq is stranded or not?
9 months ago by
Kermit
▴ 90
1
vote
1
reply
36k
views
Answer:
Answer: How to know that your RNA-seq is stranded or not?
9 months ago by
Kermit
▴ 90
0
votes
0
replies
7.0k
views
Comment:
Comment: bbmap split paired-end reads back into separated fastq files?
9 months ago by
Kermit
▴ 90
0
votes
0
replies
14k
views
Comment:
Comment: How to identify 16s sequences from binning data(contigs)?
9 months ago by
Kermit
▴ 90
0
votes
3
replies
768
views
Removing overrepresented sequences in paired end RNA-seq
cutadapt
rna-seq
trimgalore
updated 9 months ago by
Ram
43k • written 9 months ago by
Kermit
▴ 90
0
votes
0
replies
768
views
Answer:
Answer: Removing overrepresented sequences in paired end RNA-seq
9 months ago by
Kermit
▴ 90
0
votes
0
replies
768
views
Comment:
Comment: Removing overrepresented sequences in paired end RNA-seq
9 months ago by
Kermit
▴ 90
0
votes
0
replies
8.4k
views
Comment:
Comment: removing overrepresented sequences from rna-seq
9 months ago by
Kermit
▴ 90
0
votes
0
replies
20k
views
Answer:
Answer: FastQC command line usage
9 months ago by
Kermit
▴ 90
2
votes
1
reply
476
views
Is RNA-Seq well suited for studying pseudogenes and lncRNA?
rna
ncRNA
transcriptome
pseudogene
rna-seq
updated 10 months ago by
rpolicastro
13k • written 10 months ago by
Kermit
▴ 90
0
votes
0
replies
2.2k
views
Comment:
Comment: should non-protein-coding rna(e.g. lncRNA) be removed in RNA-Seq differential ex
10 months ago by
Kermit
▴ 90
0
votes
1
reply
65k
views
Comment:
Comment: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
10 months ago by
Kermit
▴ 90
0
votes
1
reply
4.3k
views
Answer:
Answer: VEP output has no gene names
10 months ago by
Kermit
▴ 90
0
votes
7
replies
1.5k
views
Why are some WES VCFs larger than others?
WES
sequencing
genomics
NGS
exome
10 months ago by
Kermit
▴ 90
0
votes
0
replies
44k
views
Comment:
Comment: How to filter vcf file on minimum genotype depth and quality for each sample
11 months ago by
Kermit
▴ 90
0
votes
0
replies
44k
views
Comment:
Comment: How to filter vcf file on minimum genotype depth and quality for each sample
11 months ago by
Kermit
▴ 90
0
votes
0
replies
1.5k
views
Comment:
Comment: Why are some WES files larger than others?
11 months ago by
Kermit
▴ 90
0
votes
2
replies
1.5k
views
Answer:
Answer: Why are some WES VCFs larger than others?
10 months ago by
Kermit
▴ 90
0
votes
0
replies
1.5k
views
Comment:
Comment: Why are some WES files larger than others?
11 months ago by
Kermit
▴ 90
0
votes
0
replies
33k
views
Answer:
Answer: Rna-Seq Pipeline
11 months ago by
Kermit
▴ 90
0
votes
0
replies
1.3k
views
Comment:
Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
13 months ago by
Kermit
▴ 90
0
votes
0
replies
1.3k
views
Comment:
Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
13 months ago by
Kermit
▴ 90
0
votes
3
replies
657
views
How many basepairs are genes padded by in WES?
NGS
sequencing
WES
exome
updated 14 months ago by
Prash
▴ 270 • written 14 months ago by
Kermit
▴ 90
0
votes
1
reply
657
views
Comment:
Comment: How many basepairs are genes padded by in WES?
14 months ago by
Kermit
▴ 90
0
votes
1
reply
18k
views
Comment:
Comment: Apple M1 processor for bioinformactics
17 months ago by
Kermit
▴ 90
3
votes
4
replies
1.0k
views
Annotate list of Ensembl genes
gene
functional-annotation
updated 18 months ago by
Laura Luebbert
▴ 450 • written 20 months ago by
Kermit
▴ 90
0
votes
0
replies
2.1k
views
Comment:
Comment: VEP outputs the similar INFO CSQ data multiple times
19 months ago by
Kermit
▴ 90
0
votes
0
replies
34k
views
Comment:
Comment: Snp Quality In Vcf File
19 months ago by
Kermit
▴ 90
0
votes
0
replies
12k
views
Comment:
Comment: Illumina cpg probe ID conversion to chromosomal location?
19 months ago by
Kermit
▴ 90
0
votes
0
replies
570
views
Comment:
Comment: Do LoF/GoF count toward transcript count?
19 months ago by
Kermit
▴ 90
2
votes
2
replies
570
views
Do LoF/GoF count toward transcript count?
expression
rna-seq
rna
19 months ago by
Kermit
▴ 90
0
votes
0
replies
5.0k
views
Comment:
Comment: problem in EnsemblID to gene symbol conversion in TCGA data
19 months ago by
Kermit
▴ 90
0
votes
1
reply
1.0k
views
Comment:
Comment: Annotate list of Ensembl genes
20 months ago by
Kermit
▴ 90
0
votes
0
replies
835
views
Comment:
Comment: TCGA - Is vital_status subject to follow_up duration?
20 months ago by
Kermit
▴ 90
1
vote
2
replies
835
views
TCGA - Is vital_status subject to follow_up duration?
phenotype
cohort
prognostic
survival
tcga
20 months ago by
Kermit
▴ 90
0
votes
0
replies
1.3k
views
Comment:
Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
20 months ago by
Kermit
▴ 90
2
votes
8
replies
1.3k
views
If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
RNA
miRNA
sequencing
RNA-seq
13 months ago by
Kermit
▴ 90
0
votes
1
reply
1.3k
views
Comment:
Comment: If RNA-seq includes miRNA genes then why are there miRNA specific pipelines?
20 months ago by
Kermit
▴ 90
88 results • Page
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