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About
amy16 • 40
Status:
New
Handle:
@amy1642415
Reputation:
40
Joined:
19 months ago
Last seen:
2.2 years ago
Location:
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comments
0
Votes
4
Replies
547
Views
Tools to do a linear or logistic regression of DEG
RNA-Seq
DEG
2.9 years ago
amy16
• 40
0
Votes
4
Replies
770
Views
genome index file
RNA-Seq
3.2 years ago
amy16
• 40
• updated 23 months ago
Biostar
20
1
Vote
1
Reply
359
Views
Recommended sequencing coverage for WGRS
next-gen
sequencing
2.8 years ago
amy16
• 40
• updated 2.3 years ago
Biostar
20
1
Vote
3
Replies
754
Views
Estimating the abundance of the transcripts and genes using stringtie
RNA-Seq
stringtie
3.0 years ago
amy16
• 40
• updated 2.3 years ago
iraia.munoa
• 60
1
Vote
0
Replies
508
Views
minimum recommended length for transcript prediction -Stringtie
RNA-Seq
stringtie
PE
2.9 years ago
amy16
• 40
0
Votes
0
Replies
547
Views
Comment:
C: Tools to do a linear or logistic regression of DEG
2.9 years ago
amy16
• 40
0
Votes
0
Replies
249
Views
RNA-seq read alignment to ref. genome-mismatch penalty
RNA-Seq
hisat2
2.9 years ago
amy16
• 40
0
Votes
0
Replies
423
Views
Comment:
C: Phenotype data analysis for QTL validation
2.9 years ago
amy16
• 40
0
Votes
2
Replies
423
Views
Phenotype data analysis for QTL validation
genetics
QTLmapping
validation
2.9 years ago
amy16
• 40
• updated 2.9 years ago
theobroma22
♦ 1.1k
0
Votes
0
Replies
821
Views
Understanding the gffcompare output for my dataset
RNA-Seq
tuxedo
gffcomapre
3.0 years ago
amy16
• 40
0
Votes
0
Replies
754
Views
Comment:
C: Estimating the abundance of the transcripts and genes using stringtie
3.0 years ago
amy16
• 40
0
Votes
0
Replies
587
Views
Comment:
C: Clarification in the workflow steps of the RNA-seq analysis for differential gen
3.0 years ago
amy16
• 40
0
Votes
2
Replies
587
Views
Clarification in the workflow steps of the RNA-seq analysis for differential gene analysis
RNA-Seq
Tuxedo
Stringtie
Assembly
3.0 years ago
amy16
• 40
1
Vote
0
Replies
480
Views
specification of linear model and log transformation in ballgown
RNA-Seq
ballgown
R
package function
3.0 years ago
amy16
• 40
0
Votes
0
Replies
354
Views
ballgownrsem function usage details
RNA-Seq
ballgown
DGE
tuxedo
3.0 years ago
amy16
• 40
0
Votes
0
Replies
762
Views
Comment:
C: Error in reading ballgown object
3.0 years ago
amy16
• 40
0
Votes
1
Reply
762
Views
Comment:
C: Error in reading ballgown object
3.0 years ago
amy16
• 40
0
Votes
0
Replies
1.5k
Views
Comment:
C: Error in file(file, "rt") : invalid 'description' argument
3.0 years ago
amy16
• 40
2
Votes
4
Replies
762
Views
Error in reading ballgown object
RNA-Seq
R
ballgown
3.0 years ago
amy16
• 40
• updated 3.0 years ago
WouterDeCoster
39k
0
Votes
2
Replies
1.5k
Views
Error in file(file, "rt") : invalid 'description' argument
RNA-Seq
R
ballgown
3.0 years ago
amy16
• 40
• updated 3.0 years ago
Kevin Blighe
43k
1
Vote
0
Replies
1.0k
Views
Comment:
C: R package information
3.0 years ago
amy16
• 40
4
Votes
3
Replies
1.0k
Views
R package information
RNA-Seq
bioconductor
R
3.0 years ago
amy16
• 40
• updated 3.0 years ago
Chris Miller
20k
0
Votes
0
Replies
536
Views
Comment:
C: syntax error in R when run on HPC
3.0 years ago
amy16
• 40
2
Votes
3
Replies
536
Views
syntax error in R when run on HPC
RNA-Seq
R
ballgown
3.0 years ago
amy16
• 40
1
Vote
2
Replies
585
Views
Differential gene expression anaylsis -Ballgown
RNA-Seq
ballgown
stringtie
3.0 years ago
amy16
• 40
• updated 3.0 years ago
Hussain Ather
• 920
0
Votes
0
Replies
737
Views
Comment:
C: Software installation error
3.1 years ago
amy16
• 40
0
Votes
1
Reply
737
Views
Comment:
C: Software installation error
3.1 years ago
amy16
• 40
0
Votes
1
Reply
737
Views
Comment:
C: Software installation error
3.1 years ago
amy16
• 40
0
Votes
1
Reply
737
Views
Comment:
C: Software installation error
3.1 years ago
amy16
• 40
0
Votes
10
Replies
737
Views
Software installation error
R
Bioconductor package
3.1 years ago
amy16
• 40
• updated 3.1 years ago
h.mon
25k
0
Votes
0
Replies
737
Views
Comment:
C: Software installation error
3.1 years ago
amy16
• 40
• updated 3.1 years ago
genomax
68k
0
Votes
0
Replies
599
Views
Alignment parameters within Hisat2
RNA-Seq
alignment
hisat2
3.2 years ago
amy16
• 40
• updated 3.1 years ago
Biostar
20
0
Votes
1
Reply
847
Views
Comment:
C: Ballgown library load
3.1 years ago
amy16
• 40
2
Votes
5
Replies
847
Views
Ballgown library load
RNA-Seq
ballgown
3.1 years ago
amy16
• 40
• updated 3.1 years ago
h.mon
25k
0
Votes
0
Replies
519
Views
Comment:
C: Differential gene expression
3.1 years ago
amy16
• 40
2
Votes
2
Replies
519
Views
Differential gene expression
RNA-Seq
ballgown
tuxedo
3.1 years ago
amy16
• 40
• updated 3.1 years ago
RamRS
21k
0
Votes
0
Replies
603
Views
Comment:
C: Stringtie output for DGE
3.2 years ago
amy16
• 40
1
Vote
2
Replies
603
Views
Stringtie output for DGE
stringtie
ballgown
3.2 years ago
amy16
• 40
3
Votes
1
Reply
545
Views
RNA-seq biological replicates for DGE
RNA-Seq
DGE
3.2 years ago
amy16
• 40
• updated 3.2 years ago
Devon Ryan
90k
0
Votes
1
Reply
718
Views
Comment:
C: BCFtools variant calling format
3.2 years ago
amy16
• 40
1
Vote
3
Replies
718
Views
BCFtools variant calling format
RNA-Seq
variant call
3.2 years ago
amy16
• 40
• updated 3.2 years ago
RamRS
21k
0
Votes
1
Reply
948
Views
Comment:
C: StringTie's merge function
3.2 years ago
amy16
• 40
3
Votes
3
Replies
948
Views
StringTie's merge function
RNA-Seq
3.2 years ago
amy16
• 40
• updated 3.2 years ago
Kevin Blighe
43k
2
Votes
1
Reply
675
Views
Misamtch penalty in RNA-seq alignment
RNA-Seq
hisat2
3.2 years ago
amy16
• 40
• updated 3.2 years ago
Istvan Albert
87k
4
Votes
4
Replies
655
Views
RNA-seq biological replicates
RNA-Seq
3.2 years ago
amy16
• 40
• updated 3.2 years ago
Kevin Blighe
43k
0
Votes
0
Replies
734
Views
Comment:
C: RNA-seq quality assessment
3.2 years ago
amy16
• 40
• updated 3.2 years ago
genomax
68k
0
Votes
0
Replies
770
Views
Comment:
C: genome index file
3.2 years ago
amy16
• 40
0
Votes
0
Replies
734
Views
Comment:
C: RNA-seq quality assessment
3.2 years ago
amy16
• 40
1
Vote
4
Replies
734
Views
RNA-seq quality assessment
RNA-Seq
3.2 years ago
amy16
• 40
• updated 3.2 years ago
mforde84
♦ 1.2k
0
Votes
0
Replies
442
Views
Major QTL of resistance
qtl
biparental mapping
3.2 years ago
amy16
• 40
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