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amy16 • 40
Status: New
Handle: @amy1642415
Reputation: 40
Email: a*********@gmail.com
Joined: 16 months ago
Last seen: 2.0 years ago
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0
Votes
4
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527
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Tools to do a linear or logistic regression of DEG
RNA-Seq DEG
2.7 years ago
amy16 • 40
0
Votes
4
Replies
769
Views
genome index file
RNA-Seq
3.0 years ago
amy16 • 40 • updated 21 months ago
Biostar 20
1
Vote
1
Reply
358
Views
Recommended sequencing coverage for WGRS
next-gen sequencing
2.6 years ago
amy16 • 40 • updated 2.1 years ago
Biostar 20
1
Vote
3
Replies
753
Views
Estimating the abundance of the transcripts and genes using stringtie
RNA-Seq stringtie
2.8 years ago
amy16 • 40 • updated 2.1 years ago
iraia.munoa • 60
1
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0
Replies
508
Views
minimum recommended length for transcript prediction -Stringtie
RNA-Seq stringtie PE
2.6 years ago
amy16 • 40
0
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0
Replies
527
Views
Comment: C: Tools to do a linear or logistic regression of DEG
2.7 years ago
amy16 • 40
0
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0
Replies
249
Views
RNA-seq read alignment to ref. genome-mismatch penalty
RNA-Seq hisat2
2.7 years ago
amy16 • 40
0
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0
Replies
421
Views
Comment: C: Phenotype data analysis for QTL validation
2.7 years ago
amy16 • 40
0
Votes
2
Replies
421
Views
Phenotype data analysis for QTL validation
genetics QTLmapping validation
2.7 years ago
amy16 • 40 • updated 2.7 years ago
theobroma22 ♦ 1.1k
0
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0
Replies
821
Views
Understanding the gffcompare output for my dataset
RNA-Seq tuxedo gffcomapre
2.8 years ago
amy16 • 40
0
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0
Replies
753
Views
Comment: C: Estimating the abundance of the transcripts and genes using stringtie
2.8 years ago
amy16 • 40
0
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0
Replies
587
Views
Comment: C: Clarification in the workflow steps of the RNA-seq analysis for differential gen
2.8 years ago
amy16 • 40
0
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2
Replies
587
Views
Clarification in the workflow steps of the RNA-seq analysis for differential gene analysis
RNA-Seq Tuxedo Stringtie Assembly
2.8 years ago
amy16 • 40
1
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0
Replies
478
Views
specification of linear model and log transformation in ballgown
RNA-Seq ballgown R package function
2.8 years ago
amy16 • 40
0
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0
Replies
353
Views
ballgownrsem function usage details
RNA-Seq ballgown DGE tuxedo
2.8 years ago
amy16 • 40
0
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0
Replies
759
Views
Comment: C: Error in reading ballgown object
2.8 years ago
amy16 • 40
0
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1
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759
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Comment: C: Error in reading ballgown object
2.8 years ago
amy16 • 40
0
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0
Replies
1.5k
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Comment: C: Error in file(file, "rt") : invalid 'description' argument
2.8 years ago
amy16 • 40
2
Votes
4
Replies
759
Views
Error in reading ballgown object
RNA-Seq R ballgown
2.8 years ago
amy16 • 40 • updated 2.8 years ago
WouterDeCoster 39k
0
Votes
2
Replies
1.5k
Views
Error in file(file, "rt") : invalid 'description' argument
RNA-Seq R ballgown
2.8 years ago
amy16 • 40 • updated 2.8 years ago
Kevin Blighe 43k
1
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0
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1.0k
Views
Comment: C: R package information
2.8 years ago
amy16 • 40
4
Votes
3
Replies
1.0k
Views
R package information
RNA-Seq bioconductor R
2.8 years ago
amy16 • 40 • updated 2.8 years ago
Chris Miller 20k
0
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0
Replies
536
Views
Comment: C: syntax error in R when run on HPC
2.8 years ago
amy16 • 40
2
Votes
3
Replies
536
Views
syntax error in R when run on HPC
RNA-Seq R ballgown
2.8 years ago
amy16 • 40
1
Vote
2
Replies
585
Views
Differential gene expression anaylsis -Ballgown
RNA-Seq ballgown stringtie
2.8 years ago
amy16 • 40 • updated 2.8 years ago
Hussain Ather • 920
0
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0
Replies
733
Views
Comment: C: Software installation error
2.9 years ago
amy16 • 40
0
Votes
1
Reply
733
Views
Comment: C: Software installation error
2.9 years ago
amy16 • 40
0
Votes
1
Reply
733
Views
Comment: C: Software installation error
2.9 years ago
amy16 • 40
0
Votes
1
Reply
733
Views
Comment: C: Software installation error
2.9 years ago
amy16 • 40
0
Votes
10
Replies
733
Views
Software installation error
R Bioconductor package
2.9 years ago
amy16 • 40 • updated 2.9 years ago
h.mon 25k
0
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0
Replies
733
Views
Comment: C: Software installation error
2.9 years ago
amy16 • 40 • updated 2.9 years ago
genomax 68k
0
Votes
0
Replies
598
Views
Alignment parameters within Hisat2
RNA-Seq alignment hisat2
3.0 years ago
amy16 • 40 • updated 2.9 years ago
Biostar 20
0
Votes
1
Reply
847
Views
Comment: C: Ballgown library load
2.9 years ago
amy16 • 40
2
Votes
5
Replies
847
Views
Ballgown library load
RNA-Seq ballgown
2.9 years ago
amy16 • 40 • updated 2.9 years ago
h.mon 25k
0
Votes
0
Replies
517
Views
Comment: C: Differential gene expression
2.9 years ago
amy16 • 40
2
Votes
2
Replies
517
Views
Differential gene expression
RNA-Seq ballgown tuxedo
2.9 years ago
amy16 • 40 • updated 2.9 years ago
RamRS 21k
0
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0
Replies
600
Views
Comment: C: Stringtie output for DGE
2.9 years ago
amy16 • 40
1
Vote
2
Replies
600
Views
Stringtie output for DGE
stringtie ballgown
2.9 years ago
amy16 • 40
3
Votes
1
Reply
544
Views
RNA-seq biological replicates for DGE
RNA-Seq DGE
2.9 years ago
amy16 • 40 • updated 2.9 years ago
Devon Ryan 90k
0
Votes
1
Reply
718
Views
Comment: C: BCFtools variant calling format
2.9 years ago
amy16 • 40
1
Vote
3
Replies
718
Views
BCFtools variant calling format
RNA-Seq variant call
3.0 years ago
amy16 • 40 • updated 3.0 years ago
RamRS 21k
0
Votes
1
Reply
948
Views
Comment: C: StringTie's merge function
3.0 years ago
amy16 • 40
3
Votes
3
Replies
948
Views
StringTie's merge function
RNA-Seq
3.0 years ago
amy16 • 40 • updated 3.0 years ago
Kevin Blighe 43k
2
Votes
1
Reply
674
Views
Misamtch penalty in RNA-seq alignment
RNA-Seq hisat2
3.0 years ago
amy16 • 40 • updated 3.0 years ago
Istvan Albert 87k
4
Votes
4
Replies
655
Views
RNA-seq biological replicates
RNA-Seq
3.0 years ago
amy16 • 40 • updated 3.0 years ago
Kevin Blighe 43k
0
Votes
0
Replies
733
Views
Comment: C: RNA-seq quality assessment
3.0 years ago
amy16 • 40 • updated 3.0 years ago
genomax 68k
0
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0
Replies
769
Views
Comment: C: genome index file
3.0 years ago
amy16 • 40
0
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0
Replies
733
Views
Comment: C: RNA-seq quality assessment
3.0 years ago
amy16 • 40
1
Vote
4
Replies
733
Views
RNA-seq quality assessment
RNA-Seq
3.0 years ago
amy16 • 40 • updated 3.0 years ago
mforde84 ♦ 1.2k
0
Votes
0
Replies
442
Views
Major QTL of resistance
qtl biparental mapping
3.0 years ago
amy16 • 40
0
Votes
1
Reply
769
Views
Comment: C: genome index file
3.0 years ago
amy16 • 40
0
Votes
1
Reply
739
Views
Comment: C: Reference genome alignment
3.0 years ago
amy16 • 40
1
Vote
1
Reply
1.1k
Views
Answer: A: RNA-seq read alignment
3.0 years ago
amy16 • 40
6
Votes
7
Replies
1.1k
Views
RNA-seq read alignment
hisat2 tophat
3.0 years ago
amy16 • 40
0
Votes
0
Replies
534
Views
Association mapping and Biparental mapping
QTL RIL GWAS
3.0 years ago
amy16 • 40
0
Votes
0
Replies
1.1k
Views
Comment: C: RNA-seq read alignment
3.0 years ago
amy16 • 40
0
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1
Reply
1.1k
Views
Comment: C: RNA-seq read alignment
3.0 years ago
amy16 • 40 • updated 3.0 years ago
genomax 68k
2
Votes
4
Replies
5.7k
Views
SAMtools installation on windows
RNA-Seq samtools
3.0 years ago
amy16 • 40 • updated 3.0 years ago
Samarth Kulshrestha • 180
0
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0
Replies
5.7k
Views
Comment: A: SAMtools installation on windows
3.0 years ago
amy16 • 40
0
Votes
1
Reply
739
Views
Comment: C: Reference genome alignment
3.0 years ago
amy16 • 40
0
Votes
1
Reply
739
Views
Comment: C: Reference genome alignment
3.0 years ago
amy16 • 40
1
Vote
12
Replies
739
Views
Reference genome alignment
RNA-Seq alignment
3.0 years ago
amy16 • 40
0
Votes
1
Reply
739
Views
Comment: A: Reference genome alignment
3.0 years ago
amy16 • 40
0
Votes
1
Reply
739
Views
Comment: C: Reference genome alignment
3.0 years ago
amy16 • 40
0
Votes
1
Reply
739
Views
Comment: C: Reference genome alignment
3.0 years ago
amy16 • 40
2
Votes
4
Replies
684
Views
Alignment to ref genome
RNA-Seq alignment
3.0 years ago
amy16 • 40
0
Votes
0
Replies
684
Views
Comment: A: Alignment to ref genome
3.0 years ago
amy16 • 40
0
Votes
1
Reply
684
Views
Comment: C: Alignment to ref genome
3.0 years ago
amy16 • 40
0
Votes
0
Replies
730
Views
Comment: C: FastQC after trimming adapters
3.0 years ago
amy16 • 40
0
Votes
0
Replies
730
Views
Comment: C: FastQC after trimming adapters
3.0 years ago
amy16 • 40
1
Vote
4
Replies
730
Views
FastQC after trimming adapters
RNA-Seq
3.0 years ago
amy16 • 40
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