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Hussain Ather • 920
Status: New
Handle: @Hussain Ather42178
Reputation: 920
Joined: 20 months ago
Twitter: shussainather
Last seen: 2.1 years ago
Location: National Institutes of Health, Bethesda, MD

Post-baccalaureate researcher interested in algorithm design and genomics. 

Comments represent my own, not necessarily my employer's.

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Answer: A: rna-seq expression analysis among several nonmodel species (Next step?)
2.3 years ago
Hussain Ather • 920
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468
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Comment: A: Convert list of rs IDs from one format to another
2.8 years ago
Hussain Ather • 920
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1.2k
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Answer: A: Generating pileup from .bam file
2.8 years ago
Hussain Ather • 920
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471
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Answer: A: Differential Expression from Quantile-Norm Data
2.8 years ago
Hussain Ather • 920
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1.0k
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Answer: A: Differential ChIP-Seq Analysis
2.8 years ago
Hussain Ather • 920
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793
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Comment: A: How can I convert from bed to bed12 format?
2.8 years ago
Hussain Ather • 920
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795
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Answer: A: How to do correlation analyses between RNAseq and ChIPseq library?
2.8 years ago
Hussain Ather • 920
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438
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Comment: C: Assessing differentially expressed proteins between two samples
2.8 years ago
Hussain Ather • 920
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869
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Answer: A: Using MACS2 for peak calling
2.8 years ago
Hussain Ather • 920
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435
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Answer: A: How to analyze the expression of a single gene in microarray data?
2.9 years ago
Hussain Ather • 920
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687
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Answer: A: [Opinion] - What alignment software do you use?
2.9 years ago
Hussain Ather • 920
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1.6k
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Answer: A: The relationship between DNA sequence divergence and recombination rates?
2.9 years ago
Hussain Ather • 920
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2.3k
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Answer: A: Question: How to generate a count matrix with featurecounts
2.9 years ago
Hussain Ather • 920
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923
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Answer: A: Is it OK doing Principal component analysis (PCA) analysis just with high varian
2.9 years ago
Hussain Ather • 920
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998
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Answer: A: Should kallisto take hours to run?
2.9 years ago
Hussain Ather • 920
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571
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Answer: A: Is there an available tool to visualize multiple "types" of ChIP-seq peaks on a
2.9 years ago
Hussain Ather • 920
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Comment: A: Algorithms in cwl
2.9 years ago
Hussain Ather • 920
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607
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Answer: A: Cufflinks and StringTie
2.9 years ago
Hussain Ather • 920
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431
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Answer: A: how to determine the gene involved in antibiotic resistance?
2.9 years ago
Hussain Ather • 920
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612
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Comment: A: merge table with gene ID and names
2.9 years ago
Hussain Ather • 920
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621
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Comment: A: IGV - is there a way to extract bulk information?
3.0 years ago
Hussain Ather • 920
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3.9k
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Answer: A: Modern software for whole genome alignment visualization
3.0 years ago
Hussain Ather • 920
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553
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Answer: A: Packages/modules for CNV, Indels, SNPs analysis
3.1 years ago
Hussain Ather • 920
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923
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Answer: A: opensource grafical user interface for filtering millions of annotated variant
3.1 years ago
Hussain Ather • 920
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Comment: C: need data sets
3.1 years ago
Hussain Ather • 920
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501
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Answer: A: Extracting Indels from two aligned DNA sequences
3.1 years ago
Hussain Ather • 920
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530
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Answer: A: The Most Appropriate Statistical Test
3.1 years ago
Hussain Ather • 920
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1.2k
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Answer: A: Assessing mapping quality from BAM files
3.1 years ago
Hussain Ather • 920
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508
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Answer: A: Machine Learning/Deep Learning approaches to integrate genotype and annotation i
3.1 years ago
Hussain Ather • 920
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356
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Answer: A: Is there a database of proteins and their functional residues?
3.1 years ago
Hussain Ather • 920
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704
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Answer: A: Annotation of taxonomy information in phylogeny tree
3.1 years ago
Hussain Ather • 920
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667
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Answer: A: Quantifying mRNA level
3.1 years ago
Hussain Ather • 920
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672
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Answer: A: Downloading data from HMPDACC.
3.1 years ago
Hussain Ather • 920
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585
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Answer: A: Differential gene expression anaylsis -Ballgown
3.1 years ago
Hussain Ather • 920
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645
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Answer: A: No peaks present in track when opening a .bedGraph file on IGV
3.1 years ago
Hussain Ather • 920
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807
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Answer: A: What shall I do with this RNA-seq data that have no replicates?
3.1 years ago
Hussain Ather • 920
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721
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Answer: A: Issue with DEXSeq installation
3.1 years ago
Hussain Ather • 920
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791
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Answer: A: rpkm and raw count
3.1 years ago
Hussain Ather • 920
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593
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Answer: A: Is anybody know why the StarBase website (http://starbase.sysu.edu.cn/) is not a
3.1 years ago
Hussain Ather • 920
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636
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Comment: A: Bowtie alignment of multiple fastq files
3.1 years ago
Hussain Ather • 920
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Answer: A: Does STAR give the reads that were mapped at intergenic regions? How can I get t
3.2 years ago
Hussain Ather • 920
3
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391
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Answer: A: add same string to the certain lines in python
3.2 years ago
Hussain Ather • 920
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530
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Answer: A: What is my total number of genes in a hypergeometic distribution test?
3.2 years ago
Hussain Ather • 920
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458
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Answer: A: How to detect insertion and deletion errors from BWA
3.2 years ago
Hussain Ather • 920
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565
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Answer: A: Patterns within groups with RNA-seq
3.2 years ago
Hussain Ather • 920
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1.9k
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Answer: A: how can i plot a heatmap in shiny from a user input file
3.2 years ago
Hussain Ather • 920
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822
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Answer: A: Names are not identical in mapping file and the otu file.
3.2 years ago
Hussain Ather • 920
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642
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Answer: A: Plant genes interaction pathway tool
3.2 years ago
Hussain Ather • 920
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471
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Which is more useful - Seaborn or Matplotlib?
matplotlib seaborn python
3.2 years ago
Hussain Ather • 920 • updated 3.2 years ago
shoujun.gu • 370
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781
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Answer: A: Filtering Fasta sequences by length (only one must prevail)
3.2 years ago
Hussain Ather • 920
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