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About
Mike Smith ♦ 1.2k
Status:
New
Handle:
@Mike Smith4156
Reputation:
1210
Joined:
19 months ago
Last seen:
19 months ago
Location:
EMBL Heidelberg / de.NBI
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comments
1
Vote
1
Reply
203
Views
Comment:
C: converting mouse emsembl gene IDs to Gene names by bioMart and gconvert with n
19 months ago
Mike Smith
♦ 1.2k
1
Vote
0
Replies
193
Views
Answer:
A: BioMart : Retrieve set_gene_id (ENSG) and set_transcript_id (ENST) from SNPs rs
19 months ago
Mike Smith
♦ 1.2k
1
Vote
0
Replies
163
Views
Answer:
A: biomaRt query Error "no upstream flank found"
20 months ago
Mike Smith
♦ 1.2k
0
Votes
1
Reply
201
Views
Comment:
C: Finding if dbSNP type in biomart
20 months ago
Mike Smith
♦ 1.2k
1
Vote
0
Replies
201
Views
Answer:
A: Finding if dbSNP type in biomart
20 months ago
Mike Smith
♦ 1.2k
1
Vote
0
Replies
164
Views
Answer:
A: Biomart select rRNA sequences
20 months ago
Mike Smith
♦ 1.2k
1
Vote
0
Replies
205
Views
Answer:
C: Mysterious genes in my Biomart results (genes that were not part of original que
21 months ago
Mike Smith
♦ 1.2k
4
Votes
0
Replies
248
Views
Answer:
A: Error in biomart connection
22 months ago
Mike Smith
♦ 1.2k
2
Votes
0
Replies
217
Views
Answer:
A: why does my biomaRt query return inconsistent dataset lists?
22 months ago
Mike Smith
♦ 1.2k
1
Vote
0
Replies
225
Views
Comment:
C: Different results from biomaRt query and search in GTF
22 months ago
Mike Smith
♦ 1.2k
3
Votes
0
Replies
271
Views
Answer:
A: How can I download data from plants.ensembl.org using wget in biomart?
23 months ago
Mike Smith
♦ 1.2k
3
Votes
0
Replies
273
Views
Answer:
A: Different filters for wheat in biomaRt package and website
24 months ago
Mike Smith
♦ 1.2k
3
Votes
0
Replies
515
Views
Answer:
A: BiomaRt: archive version of ensembl not working
2.0 years ago
Mike Smith
♦ 1.2k
2
Votes
1
Reply
523
Views
Comment:
C: annotation - biomaRt - getBM - multiple entrez ID
2.1 years ago
Mike Smith
♦ 1.2k
5
Votes
0
Replies
526
Views
Answer:
A: How to extract all attribute from Biomart?
2.1 years ago
Mike Smith
♦ 1.2k
0
Votes
0
Replies
852
Views
Comment:
C: BioMart: connection fails
2.2 years ago
Mike Smith
♦ 1.2k
2
Votes
1
Reply
435
Views
Answer:
A: Trying to add ensembl_transcript_id using Biomart
2.3 years ago
Mike Smith
♦ 1.2k
1
Vote
0
Replies
276
Views
Answer:
A: Biomart package listFilter function with with_mirbase vs other mir information
2.4 years ago
Mike Smith
♦ 1.2k
4
Votes
0
Replies
618
Views
Answer:
A: biomaRt rnorvegicus_gene_ensembl dataset is not valid!
2.5 years ago
Mike Smith
♦ 1.2k
1
Vote
0
Replies
618
Views
Comment:
C: biomaRt rnorvegicus_gene_ensembl dataset is not valid!
2.5 years ago
Mike Smith
♦ 1.2k
4
Votes
1
Reply
540
Views
Answer:
A: Find all rsid synonyms for a list of rsids
2.6 years ago
Mike Smith
♦ 1.2k
2
Votes
1
Reply
1.1k
Views
Comment:
C: Obtaining rsIDs using BiomaRt or linux
2.6 years ago
Mike Smith
♦ 1.2k
2
Votes
0
Replies
386
Views
Answer:
A: How to avoid annotating multiple genes to a single CpG locus?
2.6 years ago
Mike Smith
♦ 1.2k
5
Votes
2
Replies
852
Views
Answer:
A: BioMart: connection fails
2.7 years ago
Mike Smith
♦ 1.2k
3
Votes
0
Replies
518
Views
Answer:
A: Query Genes within regions
2.7 years ago
Mike Smith
♦ 1.2k
0
Votes
0
Replies
535
Views
Comment:
C: Where can I download homo sapiens gene locations file including ensembl gene id,
2.7 years ago
Mike Smith
♦ 1.2k
3
Votes
0
Replies
2.0k
Views
Answer:
A: Mapping Ensembl Gene IDs with dot suffix
2.9 years ago
Mike Smith
♦ 1.2k
7
Votes
0
Replies
3.3k
Views
Answer:
A: Get gene symbols from gene ids for mouse using BioMart
2.9 years ago
Mike Smith
♦ 1.2k
0
Votes
0
Replies
765
Views
Answer:
A: R ShortRead : Merge list of ShortReadQ object
2.9 years ago
Mike Smith
♦ 1.2k
0
Votes
0
Replies
1.6k
Views
Comment:
C: 98.21% of input gene IDs are fail to map
3.0 years ago
Mike Smith
♦ 1.2k
3
Votes
1
Reply
1.6k
Views
Answer:
A: 98.21% of input gene IDs are fail to map
3.0 years ago
Mike Smith
♦ 1.2k
4
Votes
1
Reply
8.5k
Views
Answer:
C: How can I uninstall my packages in Rstudio
3.0 years ago
Mike Smith
♦ 1.2k
0
Votes
0
Replies
527
Views
Comment:
C: Error in BioMartVersion
3.0 years ago
Mike Smith
♦ 1.2k
2
Votes
1
Reply
795
Views
Answer:
A: Error using BioMart. No encoding supplied.
3.0 years ago
Mike Smith
♦ 1.2k
1
Vote
1
Reply
3.9k
Views
Comment:
C: biomaRt mmusculus_gene_ensembl dataset
3.1 years ago
Mike Smith
♦ 1.2k
0
Votes
1
Reply
3.9k
Views
Comment:
C: biomaRt mmusculus_gene_ensembl dataset
3.1 years ago
Mike Smith
♦ 1.2k
6
Votes
1
Reply
3.9k
Views
Answer:
A: biomaRt mmusculus_gene_ensembl dataset
3.1 years ago
Mike Smith
♦ 1.2k
5
Votes
1
Reply
744
Views
Answer:
A: biomaRt: Cannot access the zebra fish dataset
3.1 years ago
Mike Smith
♦ 1.2k
0
Votes
0
Replies
657
Views
Answer:
A: Trying to map informations between two Mus musculus strains with biomaRt externa
3.1 years ago
Mike Smith
♦ 1.2k
1
Vote
2
Replies
3.2k
Views
Comment:
C: 'BiocParallel' did not register default BiocParallelParams
3.2 years ago
Mike Smith
♦ 1.2k
1
Vote
1
Reply
2.4k
Views
Comment:
C: Is biomaRt service down?
3.2 years ago
Mike Smith
♦ 1.2k
2
Votes
1
Reply
2.4k
Views
Answer:
A: Is biomaRt service down?
3.2 years ago
Mike Smith
♦ 1.2k
0
Votes
1
Reply
666
Views
Comment:
C: R biomaRt snp_mart down?
3.3 years ago
Mike Smith
♦ 1.2k
3
Votes
0
Replies
1.0k
Views
Answer:
A: Error accessing ensembl biomart via BiomaRt R package
3.3 years ago
Mike Smith
♦ 1.2k
1
Vote
1
Reply
1.0k
Views
Comment:
C: Error accessing ensembl biomart via BiomaRt R package
3.3 years ago
Mike Smith
♦ 1.2k
2
Votes
0
Replies
825
Views
Comment:
C: Inconsistencies in Using biomaRt to Retrieve HGNC Names from GO Terms
3.3 years ago
Mike Smith
♦ 1.2k
4
Votes
1
Reply
1.2k
Views
Answer:
A: Retrieving phytozome data using the R bioconductor package biomaRt
3.4 years ago
Mike Smith
♦ 1.2k
0
Votes
0
Replies
915
Views
Comment:
C: Converting between Ensembl Versions
3.5 years ago
Mike Smith
♦ 1.2k
2
Votes
1
Reply
915
Views
Answer:
A: Converting between Ensembl Versions
3.5 years ago
Mike Smith
♦ 1.2k
2
Votes
1
Reply
849
Views
Answer:
A: Retrieve all genes under a mammalian phenotype ontology term
3.7 years ago
Mike Smith
♦ 1.2k
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