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comments
1
vote
0
replies
361
views
How to get a partition file for phylogenetic trees?
phylogenetic
python
analysis
partition
13 months ago by
YOUSEUFS
▴ 30
0
votes
0
replies
290
views
How to get Pfam domain ID's for a proteome?
pfam
acid
protein
amino
interpro
domains
15 months ago by
YOUSEUFS
▴ 30
0
votes
0
replies
581
views
Comment:
Comment: Collapse multifasta file by specific chromosome names
17 months ago by
YOUSEUFS
▴ 30
0
votes
1
reply
581
views
Comment:
Comment: Collapse multifasta file by specific chromosome names
17 months ago by
YOUSEUFS
▴ 30
2
votes
4
replies
581
views
Collapse multifasta file by specific chromosome names
fasta
17 months ago by
YOUSEUFS
▴ 30
1
vote
2
replies
542
views
Can you do a sequence alignment with an uneven number of genes? (For phylogenetics)
alignment
phylogenetics
sequence
updated 17 months ago by
GenoMax
141k • written 17 months ago by
YOUSEUFS
▴ 30
0
votes
1
reply
407
views
How to retrieve all genes of interest from GenBank?
ncbi
genbank
phylogenetics
mitochondria
updated 17 months ago by
Istvan Albert
100k • written 17 months ago by
YOUSEUFS
▴ 30
2
votes
4
replies
582
views
How to extract and concatenate fasta lines that match substring?
fasta
python
updated 18 months ago by
rpolicastro
13k • written 18 months ago by
YOUSEUFS
▴ 30
0
votes
1
reply
582
views
Comment:
Comment: How to extract and concatenate fasta lines that match substring?
18 months ago by
YOUSEUFS
▴ 30
0
votes
0
replies
908
views
Comment:
Comment: How to batch download multiple mitochondrial FASTA & GFF files?
19 months ago by
YOUSEUFS
▴ 30
0
votes
1
reply
908
views
Comment:
Comment: How to batch download multiple mitochondrial FASTA & GFF files?
19 months ago by
YOUSEUFS
▴ 30
0
votes
1
reply
908
views
Comment:
Comment: How to batch download multiple mitochondrial FASTA & GFF files?
19 months ago by
YOUSEUFS
▴ 30
0
votes
1
reply
908
views
Comment:
Comment: How to batch download multiple mitochondrial FASTA & GFF files?
19 months ago by
YOUSEUFS
▴ 30
2
votes
8
replies
908
views
How to batch download multiple mitochondrial FASTA & GFF files?
ncbi
genomics
mitochondria
genomes
entrez
19 months ago by
YOUSEUFS
▴ 30
1
vote
1
reply
487
views
Where are the associated annotation (GFF) files for mitochondrial genomes on NCBI?
phylogenomics
mitochondrial
genomics
NCBI
19 months ago by
YOUSEUFS
▴ 30
1
vote
0
replies
487
views
Answer:
Answer: Where are the associated annotation (GFF) files for mitochondrial genomes on NCB
19 months ago by
YOUSEUFS
▴ 30
1
vote
1
reply
510
views
Extract reads from specific taxa in blob tools?
genomics
metagenomics
blobtools
updated 10 months ago by
Ram
43k • written 21 months ago by
YOUSEUFS
▴ 30
1
vote
0
replies
907
views
topGO enrichment: Should the "Gene universe" also contain genes with no GO term?
enrichment
RNA-Seq
go
topGO
3.4 years ago by
YOUSEUFS
▴ 30
0
votes
0
replies
2.2k
views
Comment:
C: GFF file multiple features for 1 gene region, how to collapse into 1?
5.5 years ago by
YOUSEUFS
▴ 30
1
vote
3
replies
2.2k
views
GFF file multiple features for 1 gene region, how to collapse into 1?
RNA-Seq
GFF
BEDTOOLS
updated 5.5 years ago by
Carambakaracho
★ 3.2k • written 5.5 years ago by
YOUSEUFS
▴ 30
8
votes
4
replies
4.7k
views
Mapping contigs & scaffolds to ref genome?
mapping
Assembly
bowtie2
updated 5.7 years ago by
h.mon
35k • written 6.5 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
2.2k
views
Comment:
C: Aligning Draft to Reference genomes, rearranging contigs?
6.5 years ago by
YOUSEUFS
▴ 30
0
votes
3
replies
2.2k
views
Aligning Draft to Reference genomes, rearranging contigs?
mummer
Assembly
alignment
6.5 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
1.5k
views
Comment:
A: .nt assemblage file, can I convert to FASTA?
updated 6.6 years ago by
Pierre Lindenbaum
161k • written 6.6 years ago by
YOUSEUFS
▴ 30
0
votes
3
replies
1.5k
views
.nt assemblage file, can I convert to FASTA?
fasta
file usage
mapping
bowtie
6.6 years ago by
YOUSEUFS
▴ 30
0
votes
1
reply
1.3k
views
htseq-count results in missing genes
htseq-count
RNA-Seq
6.7 years ago by
YOUSEUFS
▴ 30
0
votes
0
replies
2.4k
views
Comment:
C: Visualising indexed and sorted bam files
6.7 years ago by
YOUSEUFS
▴ 30
6
votes
5
replies
2.4k
views
Visualising indexed and sorted bam files
rna-seq
updated 6.7 years ago by
Charles Plessy
★ 2.9k • written 6.7 years ago by
YOUSEUFS
▴ 30
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