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m93 • 150
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Handle: @m9340453
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15
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6
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5.8k
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Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk minor major reference alleles
2.5 years ago
m93 • 150 • updated 19 months ago
alhamidi.reem • 0
0
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0
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217
Views
Comment: C: Is DAVID an over-representation (ORA) tool for pathway analysis
19 months ago
m93 • 150
1
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2
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217
Views
Is DAVID an over-representation (ORA) tool for pathway analysis
DAVID pathway-analysis
20 months ago
m93 • 150 • updated 20 months ago
h.mon 25k
0
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0
Replies
611
Views
edgeR: how to make contrasts with makeContrasts
ngs edgeR makeContrasts glm dge
23 months ago
m93 • 150
1
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2
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391
Views
Reformating bedGraph files in shell script
bedGraph bigWig ucsc chr awk
2.1 years ago
m93 • 150 • updated 24 months ago
Biostar 20
0
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0
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346
Views
UCSC hub: autoscale option for multiwig track
ucsc multiWig track autoscale
2.1 years ago
m93 • 150
0
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0
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355
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Comment: C: variableStep vs fixedStep for range formats
2.1 years ago
m93 • 150
3
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2
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355
Views
variableStep vs fixedStep for range formats
ucsc formats bigwig bedgraph range
2.1 years ago
m93 • 150 • updated 2.1 years ago
RamRS 21k
0
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0
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391
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Comment: C: Reformating bedGraph files in shell script
2.1 years ago
m93 • 150
0
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1
Reply
582
Views
Comment: C: Output bedGraph from genomeCoverageBed is missing "chr"
2.1 years ago
m93 • 150
0
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1
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582
Views
Comment: C: Output bedGraph from genomeCoverageBed is missing "chr"
2.1 years ago
m93 • 150
0
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1
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582
Views
Comment: C: Output bedGraph from genomeCoverageBed is missing "chr"
2.1 years ago
m93 • 150
5
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8
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582
Views
Output bedGraph from genomeCoverageBed is missing "chr"
RNA-Seq ucsc genomeCoverageBed bedGraph bigWig
2.1 years ago
m93 • 150 • updated 2.1 years ago
RamRS 21k
0
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0
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762
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Comment: C: How to get raw Github URL for a large file
2.2 years ago
m93 • 150
5
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3
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762
Views
How to get raw Github URL for a large file
ucsc url github
2.2 years ago
m93 • 150 • updated 2.2 years ago
jared.andrews07 ♦ 2.4k
22
Votes
10
Replies
648
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Any suggestions for basic intro to submitting jobs to an HPC cluster?
hpc job submission ngs
2.2 years ago
m93 • 150 • updated 2.2 years ago
Jeremy Leipzig 18k
0
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0
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828
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Comment: C: Understanding subsampling with Samtools
2.2 years ago
m93 • 150
3
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4
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828
Views
Understanding subsampling with Samtools
RNA-Seq subsampling samtools seed reads
2.2 years ago
m93 • 150
7
Votes
3
Replies
573
Views
Normalising RNA-seq samples from bam files for UCSC Genome browser visualization
RNA-Seq ucsc bam bigwig
2.2 years ago
m93 • 150 • updated 2.2 years ago
Ian 5.4k
13
Votes
8
Replies
417
Views
Comparing reads of multiple BAM files (using getopts for parsing)
bam samtools seqtl getopts
2.2 years ago
m93 • 150 • updated 2.2 years ago
Joe 12k
0
Votes
1
Reply
736
Views
Comment: C: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
2.2 years ago
m93 • 150
0
Votes
1
Reply
736
Views
Comment: C: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
2.2 years ago
m93 • 150
3
Votes
5
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736
Views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc bigwig BedgraphToBigWig bamCoverage deeptools
2.2 years ago
m93 • 150
0
Votes
1
Reply
1.0k
Views
Comment: C: Bam to RPM Bedgraph Conversion
2.2 years ago
m93 • 150
0
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1
Reply
1.0k
Views
Comment: C: Bam to RPM Bedgraph Conversion
2.2 years ago
m93 • 150
0
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1
Reply
1.0k
Views
Comment: C: Bam to RPM Bedgraph Conversion
2.2 years ago
m93 • 150
0
Votes
1
Reply
437
Views
Comment: C: Hosting location for UCSC data hub: cluster v server
2.2 years ago
m93 • 150
0
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2
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437
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Comment: C: Hosting location for UCSC data hub: cluster v server
2.2 years ago
m93 • 150
3
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6
Replies
437
Views
Hosting location for UCSC data hub: cluster v server
UCSC data-hub tracks cluster
2.2 years ago
m93 • 150 • updated 2.2 years ago
Alex Reynolds 28k
3
Votes
13
Replies
1.3k
Views
Trim_galore on multiple fast.qz files: syntax problem
nsg trim_galore gnu parallel
2.3 years ago
m93 • 150
0
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1
Reply
1.3k
Views
Comment: C: Trim_galore on multiple fast.qz files: syntax problem
2.3 years ago
m93 • 150
0
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1
Reply
1.3k
Views
Comment: C: Trim_galore on multiple fast.qz files: syntax problem
2.3 years ago
m93 • 150
0
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0
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1.3k
Views
Comment: C: Trim_galore on multiple fast.qz files: syntax problem
2.3 years ago
m93 • 150
0
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1
Reply
1.3k
Views
Comment: C: Trim_galore on multiple fast.qz files: syntax problem
2.3 years ago
m93 • 150
3
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2
Replies
1.1k
Views
Installing MultiQC on Ubuntu
ngs fastqc multiqc
2.3 years ago
m93 • 150 • updated 2.3 years ago
andrew.j.skelton73 5.7k
5
Votes
5
Replies
3.6k
Views
FastQC with multiple FASTQ files
ngs fastqc multiple
2.3 years ago
m93 • 150 • updated 2.3 years ago
drkennetz • 370
2
Votes
1
Reply
348
Views
Relationship between sequencing lane and ngs dataset
ngs lane flow-cell
2.3 years ago
m93 • 150 • updated 2.3 years ago
genomax 68k
13
Votes
4
Replies
2.1k
Views
NGS analysis: how to handle paired-end reads
ngs paired-end reads analysis pipeline
2.5 years ago
m93 • 150 • updated 2.5 years ago
manuel.belmadani • 830
0
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0
Replies
5.8k
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Comment: C: Definition of minor and major allele and connection with risk, effect, wildtype
2.5 years ago
m93 • 150
0
Votes
1
Reply
5.8k
Views
Comment: C: Definition of minor and major allele and connection with risk, effect, wildtype
2.5 years ago
m93 • 150
0
Votes
1
Reply
916
Views
Obtaining hazard ratio from beta and chi-square values
probabel cox_regression hazard_ratio
2.9 years ago
m93 • 150 • updated 2.9 years ago
Kevin Blighe 43k
0
Votes
0
Replies
675
Views
Problem imputing (large) file into GenABEL
GenABEL IMPUTE2 impute2databel
3.0 years ago
m93 • 150
8
Votes
6
Replies
1.1k
Views
Which skills are most required to become a good bioinformatician?
job education bioinformatics Improving career
3.2 years ago
m93 • 150 • updated 3.0 years ago
Biostar 20
0
Votes
0
Replies
610
Views
IMPUTE2: change names of specific SNPs
impute2 SNPs names
3.1 years ago
m93 • 150
6
Votes
1
Reply
3.9k
Views
Bash: find duplicates based on 2 columns and keep duplicate with lowest value in a different column
bash awk duplicates
3.1 years ago
m93 • 150 • updated 3.1 years ago
shenwei356 4.6k
1
Vote
1
Reply
998
Views
R: How to test for trend of risk scores
R trend test risk scores
3.1 years ago
m93 • 150 • updated 3.1 years ago
Biostar 20
0
Votes
0
Replies
671
Views
Gtool missing output .sample file
gtool missing output file .sample file
3.1 years ago
m93 • 150
0
Votes
0
Replies
1.1k
Views
Answer: A: Which skills are most required to become a good bioinformatician?
3.1 years ago
m93 • 150
0
Votes
1
Reply
716
Views
Snptest -overlap option
snptest -overlap testing multile datasets together
3.2 years ago
m93 • 150
0
Votes
0
Replies
1.0k
Views
Problem with PRSice package using dosage files
PRSice Dosage format polygenic risk calculation
3.3 years ago
m93 • 150
0
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0
Replies
666
Views
Comment: C: Confusing allele notation for SNP data
3.3 years ago
m93 • 150
2
Votes
2
Replies
666
Views
Confusing allele notation for SNP data
SNP
3.3 years ago
m93 • 150
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