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About
m93 • 150
Status:
New
Handle:
@m9340453
Reputation:
150
Joined:
19 months ago
Last seen:
2.0 years ago
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comments
15
Votes
6
Replies
5.8k
Views
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk
minor
major
reference
alleles
2.7 years ago
m93
• 150
• updated 22 months ago
alhamidi.reem
• 0
0
Votes
0
Replies
218
Views
Comment:
C: Is DAVID an over-representation (ORA) tool for pathway analysis
22 months ago
m93
• 150
1
Vote
2
Replies
218
Views
Is DAVID an over-representation (ORA) tool for pathway analysis
DAVID
pathway-analysis
22 months ago
m93
• 150
• updated 22 months ago
h.mon
25k
0
Votes
0
Replies
611
Views
edgeR: how to make contrasts with makeContrasts
ngs
edgeR
makeContrasts
glm
dge
2.2 years ago
m93
• 150
1
Vote
2
Replies
391
Views
Reformating bedGraph files in shell script
bedGraph
bigWig
ucsc
chr
awk
2.4 years ago
m93
• 150
• updated 2.2 years ago
Biostar
20
0
Votes
0
Replies
346
Views
UCSC hub: autoscale option for multiwig track
ucsc
multiWig
track
autoscale
2.3 years ago
m93
• 150
0
Votes
0
Replies
358
Views
Comment:
C: variableStep vs fixedStep for range formats
2.3 years ago
m93
• 150
3
Votes
2
Replies
358
Views
variableStep vs fixedStep for range formats
ucsc
formats
bigwig
bedgraph
range
2.3 years ago
m93
• 150
• updated 2.3 years ago
RamRS
21k
0
Votes
0
Replies
391
Views
Comment:
C: Reformating bedGraph files in shell script
2.4 years ago
m93
• 150
0
Votes
1
Reply
582
Views
Comment:
C: Output bedGraph from genomeCoverageBed is missing "chr"
2.4 years ago
m93
• 150
0
Votes
1
Reply
582
Views
Comment:
C: Output bedGraph from genomeCoverageBed is missing "chr"
2.4 years ago
m93
• 150
0
Votes
1
Reply
582
Views
Comment:
C: Output bedGraph from genomeCoverageBed is missing "chr"
2.4 years ago
m93
• 150
5
Votes
8
Replies
582
Views
Output bedGraph from genomeCoverageBed is missing "chr"
RNA-Seq
ucsc
genomeCoverageBed
bedGraph
bigWig
2.4 years ago
m93
• 150
• updated 2.4 years ago
RamRS
21k
0
Votes
0
Replies
762
Views
Comment:
C: How to get raw Github URL for a large file
2.4 years ago
m93
• 150
5
Votes
3
Replies
762
Views
How to get raw Github URL for a large file
ucsc
url
github
2.4 years ago
m93
• 150
• updated 2.4 years ago
jared.andrews07
♦ 2.4k
22
Votes
10
Replies
650
Views
10 follow
Any suggestions for basic intro to submitting jobs to an HPC cluster?
hpc
job
submission
ngs
2.4 years ago
m93
• 150
• updated 2.4 years ago
Jeremy Leipzig
18k
0
Votes
0
Replies
832
Views
Comment:
C: Understanding subsampling with Samtools
2.4 years ago
m93
• 150
3
Votes
4
Replies
832
Views
Understanding subsampling with Samtools
RNA-Seq
subsampling
samtools
seed
reads
2.4 years ago
m93
• 150
7
Votes
3
Replies
573
Views
Normalising RNA-seq samples from bam files for UCSC Genome browser visualization
RNA-Seq
ucsc
bam
bigwig
2.4 years ago
m93
• 150
• updated 2.4 years ago
Ian
5.4k
13
Votes
8
Replies
417
Views
Comparing reads of multiple BAM files (using getopts for parsing)
bam
samtools
seqtl
getopts
2.4 years ago
m93
• 150
• updated 2.4 years ago
Joe
12k
0
Votes
1
Reply
736
Views
Comment:
C: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
2.4 years ago
m93
• 150
0
Votes
1
Reply
736
Views
Comment:
C: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
2.4 years ago
m93
• 150
3
Votes
5
Replies
736
Views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc
bigwig
BedgraphToBigWig
bamCoverage
deeptools
2.4 years ago
m93
• 150
0
Votes
1
Reply
1.0k
Views
Comment:
C: Bam to RPM Bedgraph Conversion
2.4 years ago
m93
• 150
0
Votes
1
Reply
1.0k
Views
Comment:
C: Bam to RPM Bedgraph Conversion
2.4 years ago
m93
• 150
0
Votes
1
Reply
1.0k
Views
Comment:
C: Bam to RPM Bedgraph Conversion
2.4 years ago
m93
• 150
0
Votes
1
Reply
438
Views
Comment:
C: Hosting location for UCSC data hub: cluster v server
2.4 years ago
m93
• 150
0
Votes
2
Replies
438
Views
Comment:
C: Hosting location for UCSC data hub: cluster v server
2.4 years ago
m93
• 150
3
Votes
6
Replies
438
Views
Hosting location for UCSC data hub: cluster v server
UCSC
data-hub
tracks
cluster
2.4 years ago
m93
• 150
• updated 2.4 years ago
Alex Reynolds
28k
3
Votes
13
Replies
1.3k
Views
Trim_galore on multiple fast.qz files: syntax problem
nsg
trim_galore
gnu
parallel
2.6 years ago
m93
• 150
0
Votes
1
Reply
1.3k
Views
Comment:
C: Trim_galore on multiple fast.qz files: syntax problem
2.6 years ago
m93
• 150
0
Votes
1
Reply
1.3k
Views
Comment:
C: Trim_galore on multiple fast.qz files: syntax problem
2.6 years ago
m93
• 150
0
Votes
0
Replies
1.3k
Views
Comment:
C: Trim_galore on multiple fast.qz files: syntax problem
2.6 years ago
m93
• 150
0
Votes
1
Reply
1.3k
Views
Comment:
C: Trim_galore on multiple fast.qz files: syntax problem
2.6 years ago
m93
• 150
3
Votes
2
Replies
1.1k
Views
Installing MultiQC on Ubuntu
ngs
fastqc
multiqc
2.6 years ago
m93
• 150
• updated 2.6 years ago
andrew.j.skelton73
5.7k
5
Votes
5
Replies
3.6k
Views
FastQC with multiple FASTQ files
ngs
fastqc
multiple
2.6 years ago
m93
• 150
• updated 2.6 years ago
drkennetz
• 370
2
Votes
1
Reply
349
Views
Relationship between sequencing lane and ngs dataset
ngs
lane
flow-cell
2.6 years ago
m93
• 150
• updated 2.6 years ago
genomax
68k
13
Votes
4
Replies
2.1k
Views
NGS analysis: how to handle paired-end reads
ngs
paired-end reads
analysis
pipeline
2.7 years ago
m93
• 150
• updated 2.7 years ago
manuel.belmadani
• 830
0
Votes
0
Replies
5.8k
Views
Comment:
C: Definition of minor and major allele and connection with risk, effect, wildtype
2.7 years ago
m93
• 150
0
Votes
1
Reply
5.8k
Views
Comment:
C: Definition of minor and major allele and connection with risk, effect, wildtype
2.7 years ago
m93
• 150
0
Votes
1
Reply
916
Views
Obtaining hazard ratio from beta and chi-square values
probabel
cox_regression
hazard_ratio
3.1 years ago
m93
• 150
• updated 3.1 years ago
Kevin Blighe
43k
0
Votes
0
Replies
676
Views
Problem imputing (large) file into GenABEL
GenABEL
IMPUTE2
impute2databel
3.3 years ago
m93
• 150
8
Votes
6
Replies
1.1k
Views
6 follow
Which skills are most required to become a good bioinformatician?
job
education
bioinformatics
Improving career
3.4 years ago
m93
• 150
• updated 3.3 years ago
Biostar
20
0
Votes
0
Replies
611
Views
IMPUTE2: change names of specific SNPs
impute2
SNPs
names
3.3 years ago
m93
• 150
6
Votes
1
Reply
3.9k
Views
Bash: find duplicates based on 2 columns and keep duplicate with lowest value in a different column
bash
awk
duplicates
3.3 years ago
m93
• 150
• updated 3.3 years ago
shenwei356
4.6k
1
Vote
1
Reply
998
Views
R: How to test for trend of risk scores
R
trend test
risk scores
3.4 years ago
m93
• 150
• updated 3.3 years ago
Biostar
20
0
Votes
0
Replies
672
Views
Gtool missing output .sample file
gtool
missing output file
.sample file
3.4 years ago
m93
• 150
0
Votes
0
Replies
1.1k
Views
Answer:
A: Which skills are most required to become a good bioinformatician?
3.4 years ago
m93
• 150
0
Votes
1
Reply
716
Views
Snptest -overlap option
snptest
-overlap
testing multile datasets together
3.4 years ago
m93
• 150
0
Votes
0
Replies
1.0k
Views
Problem with PRSice package using dosage files
PRSice
Dosage format
polygenic risk calculation
3.5 years ago
m93
• 150
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