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m93 • 150
Status: New
Handle: @m9340453
Reputation: 150
Email: m*********@gmail.com
Joined: 12 months ago
Last seen: 18 months ago
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15
Votes
6
Replies
5.8k
Views
Definition of minor and major allele and connection with risk, effect, wildtype and reference allele
risk minor major reference alleles
2.2 years ago
m93 • 150 • updated 15 months ago
alhamidi.reem • 0
0
Votes
0
Replies
214
Views
C: Is DAVID an over-representation (ORA) tool for pathway analysis
16 months ago
m93 • 150
1
Vote
2
Replies
214
Views
Is DAVID an over-representation (ORA) tool for pathway analysis
DAVID pathway-analysis
16 months ago
m93 • 150 • updated 16 months ago
h.mon 25k
0
Votes
0
Replies
608
Views
edgeR: how to make contrasts with makeContrasts
ngs edgeR makeContrasts glm dge
20 months ago
m93 • 150
1
Vote
2
Replies
388
Views
Reformating bedGraph files in shell script
bedGraph bigWig ucsc chr awk
22 months ago
m93 • 150 • updated 20 months ago
Biostar 20
0
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0
Replies
343
Views
UCSC hub: autoscale option for multiwig track
ucsc multiWig track autoscale
21 months ago
m93 • 150
0
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0
Replies
345
Views
C: variableStep vs fixedStep for range formats
21 months ago
m93 • 150
3
Votes
2
Replies
345
Views
variableStep vs fixedStep for range formats
ucsc formats bigwig bedgraph range
21 months ago
m93 • 150 • updated 21 months ago
RamRS 21k
0
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0
Replies
388
Views
C: Reformating bedGraph files in shell script
22 months ago
m93 • 150
0
Votes
1
Reply
578
Views
C: Output bedGraph from genomeCoverageBed is missing "chr"
22 months ago
m93 • 150
0
Votes
1
Reply
578
Views
C: Output bedGraph from genomeCoverageBed is missing "chr"
22 months ago
m93 • 150
0
Votes
1
Reply
578
Views
C: Output bedGraph from genomeCoverageBed is missing "chr"
22 months ago
m93 • 150
5
Votes
8
Replies
578
Views
Output bedGraph from genomeCoverageBed is missing "chr"
RNA-Seq ucsc genomeCoverageBed bedGraph bigWig
22 months ago
m93 • 150 • updated 22 months ago
RamRS 21k
0
Votes
0
Replies
760
Views
C: How to get raw Github URL for a large file
22 months ago
m93 • 150
5
Votes
3
Replies
760
Views
How to get raw Github URL for a large file
ucsc url github
22 months ago
m93 • 150 • updated 22 months ago
jared.andrews07 ♦ 2.4k
22
Votes
10
Replies
643
Views
Any suggestions for basic intro to submitting jobs to an HPC cluster?
hpc job submission ngs
22 months ago
m93 • 150 • updated 22 months ago
Jeremy Leipzig 18k
0
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0
Replies
821
Views
C: Understanding subsampling with Samtools
22 months ago
m93 • 150
3
Votes
4
Replies
821
Views
Understanding subsampling with Samtools
RNA-Seq subsampling samtools seed reads
22 months ago
m93 • 150
7
Votes
3
Replies
565
Views
Normalising RNA-seq samples from bam files for UCSC Genome browser visualization
RNA-Seq ucsc bam bigwig
22 months ago
m93 • 150 • updated 22 months ago
Ian 5.4k
13
Votes
8
Replies
415
Views
Comparing reads of multiple BAM files (using getopts for parsing)
bam samtools seqtl getopts
22 months ago
m93 • 150 • updated 22 months ago
Joe 12k
0
Votes
1
Reply
731
Views
C: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
22 months ago
m93 • 150
0
Votes
1
Reply
731
Views
C: Different bigwig file sizes between BedgraphToBigwig and bamCoverage
22 months ago
m93 • 150
3
Votes
5
Replies
731
Views
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
ucsc bigwig BedgraphToBigWig bamCoverage deeptools
22 months ago
m93 • 150
0
Votes
1
Reply
1.0k
Views
C: Bam to RPM Bedgraph Conversion
22 months ago
m93 • 150
0
Votes
1
Reply
1.0k
Views
C: Bam to RPM Bedgraph Conversion
22 months ago
m93 • 150
0
Votes
1
Reply
1.0k
Views
C: Bam to RPM Bedgraph Conversion
22 months ago
m93 • 150
0
Votes
1
Reply
433
Views
C: Hosting location for UCSC data hub: cluster v server
22 months ago
m93 • 150
0
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2
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433
Views
C: Hosting location for UCSC data hub: cluster v server
22 months ago
m93 • 150
3
Votes
6
Replies
433
Views
Hosting location for UCSC data hub: cluster v server
UCSC data-hub tracks cluster
22 months ago
m93 • 150 • updated 22 months ago
Alex Reynolds 28k
3
Votes
13
Replies
1.2k
Views
Trim_galore on multiple fast.qz files: syntax problem
nsg trim_galore gnu parallel
2.0 years ago
m93 • 150
0
Votes
1
Reply
1.2k
Views
C: Trim_galore on multiple fast.qz files: syntax problem
2.0 years ago
m93 • 150
0
Votes
1
Reply
1.2k
Views
C: Trim_galore on multiple fast.qz files: syntax problem
2.0 years ago
m93 • 150
0
Votes
0
Replies
1.2k
Views
C: Trim_galore on multiple fast.qz files: syntax problem
2.0 years ago
m93 • 150
0
Votes
1
Reply
1.2k
Views
C: Trim_galore on multiple fast.qz files: syntax problem
2.0 years ago
m93 • 150
3
Votes
2
Replies
1.1k
Views
Installing MultiQC on Ubuntu
ngs fastqc multiqc
2.0 years ago
m93 • 150 • updated 2.0 years ago
andrew.j.skelton73 5.7k
5
Votes
5
Replies
3.6k
Views
FastQC with multiple FASTQ files
ngs fastqc multiple
2.0 years ago
m93 • 150 • updated 2.0 years ago
drkennetz • 370
2
Votes
1
Reply
346
Views
Relationship between sequencing lane and ngs dataset
ngs lane flow-cell
2.0 years ago
m93 • 150 • updated 2.0 years ago
genomax 68k
13
Votes
4
Replies
2.0k
Views
NGS analysis: how to handle paired-end reads
ngs paired-end reads analysis pipeline
2.2 years ago
m93 • 150 • updated 2.2 years ago
manuel.belmadani • 830
0
Votes
0
Replies
5.8k
Views
C: Definition of minor and major allele and connection with risk, effect, wildtype
2.2 years ago
m93 • 150
0
Votes
1
Reply
5.8k
Views
C: Definition of minor and major allele and connection with risk, effect, wildtype
2.2 years ago
m93 • 150
0
Votes
1
Reply
915
Views
Obtaining hazard ratio from beta and chi-square values
probabel cox_regression hazard_ratio
2.6 years ago
m93 • 150 • updated 2.6 years ago
Kevin Blighe 43k
0
Votes
0
Replies
672
Views
Problem imputing (large) file into GenABEL
GenABEL IMPUTE2 impute2databel
2.7 years ago
m93 • 150
8
Votes
6
Replies
1.1k
Views
Which skills are most required to become a good bioinformatician?
job education bioinformatics Improving career
2.8 years ago
m93 • 150 • updated 2.7 years ago
Biostar 20
0
Votes
0
Replies
607
Views
IMPUTE2: change names of specific SNPs
impute2 SNPs names
2.8 years ago
m93 • 150
6
Votes
1
Reply
3.9k
Views
Bash: find duplicates based on 2 columns and keep duplicate with lowest value in a different column
bash awk duplicates
2.8 years ago
m93 • 150 • updated 2.8 years ago
shenwei356 4.6k
1
Vote
1
Reply
997
Views
R: How to test for trend of risk scores
R trend test risk scores
2.8 years ago
m93 • 150 • updated 2.8 years ago
Biostar 20
0
Votes
0
Replies
668
Views
Gtool missing output .sample file
gtool missing output file .sample file
2.8 years ago
m93 • 150
0
Votes
0
Replies
1.1k
Views
A: Which skills are most required to become a good bioinformatician?
2.8 years ago
m93 • 150
0
Votes
1
Reply
712
Views
Snptest -overlap option
snptest -overlap testing multile datasets together
2.9 years ago
m93 • 150
0
Votes
0
Replies
998
Views
Problem with PRSice package using dosage files
PRSice Dosage format polygenic risk calculation
3.0 years ago
m93 • 150
0
Votes
0
Replies
665
Views
C: Confusing allele notation for SNP data
3.0 years ago
m93 • 150
2
Votes
2
Replies
665
Views
Confusing allele notation for SNP data
SNP
3.0 years ago
m93 • 150
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