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Pin.Bioinf • 240
Status: New
Handle: @Pin.Bioinf38957
Reputation: 240
Joined: 21 months ago
Last seen: 2.3 years ago
Location: Malaga

Im a Health Engineer with a Bioinformatics specialization doing epigenetics research.

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8
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3
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489
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All CpG sites in human genome RRBS
BSSeq RRBS Genome Human
2.4 years ago
Pin.Bioinf • 240 • updated 24 months ago
Illinu • 90
0
Votes
2
Replies
260
Views
Comment: C: What is the target region size for total rnaseq?
2.0 years ago
Pin.Bioinf • 240
0
Votes
2
Replies
260
Views
Comment: C: What is the target region size for total rnaseq?
2.0 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
260
Views
Comment: C: What is the target region size for total rnaseq?
2.0 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
260
Views
Comment: C: What is the target region size for total rnaseq?
2.0 years ago
Pin.Bioinf • 240
5
Votes
11
Replies
260
Views
What is the target region size for total rnaseq?
RNA-Seq
2.0 years ago
Pin.Bioinf • 240
0
Votes
0
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215
Views
From mpileup on bam files to TMB calculation, how is it done?
mutations TMB snps bam mpileup
2.0 years ago
Pin.Bioinf • 240
0
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0
Replies
158
Views
How to check for the correlation between gene expression counts and clinical categorical variables?
correlations ANOVA clinical genecounts
2.1 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
189
Views
How to build a phylogenetic tree (breast cancer samples)
phylogenetic tree phylogenetics
2.1 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
293
Views
Comment: C: Why some tumors are grouped with the controls?
2.1 years ago
Pin.Bioinf • 240
0
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1
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293
Views
Comment: C: Why some tumors are grouped with the controls?
2.1 years ago
Pin.Bioinf • 240
0
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1
Reply
293
Views
Comment: C: Why some tumors are grouped with the controls?
2.1 years ago
Pin.Bioinf • 240
11
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7
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293
Views
Why some tumors are grouped with the controls?
Methylation cpgs
2.1 years ago
Pin.Bioinf • 240 • updated 2.1 years ago
Kevin Blighe 43k
0
Votes
1
Reply
515
Views
Comment: C: Different samples order in .ped and phynotype data files
2.2 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
335
Views
Comment: C: PLINK assoc input: can it be two vcf files case/control?
2.2 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
335
Views
Comment: C: PLINK assoc input: can it be two vcf files case/control?
2.2 years ago
Pin.Bioinf • 240
4
Votes
5
Replies
335
Views
PLINK assoc input: can it be two vcf files case/control?
PLINK vcf snps association
2.2 years ago
Pin.Bioinf • 240 • updated 2.2 years ago
Kevin Blighe 43k
0
Votes
0
Replies
277
Views
Comment: C: Comparing VCF files between two groups (15 vcf files against 15 vcf files)
2.2 years ago
Pin.Bioinf • 240
3
Votes
2
Replies
277
Views
Comparing VCF files between two groups (15 vcf files against 15 vcf files)
vcf SNP variants PLINK
2.2 years ago
Pin.Bioinf • 240 • updated 2.2 years ago
Raony Guimarães • 990
0
Votes
0
Replies
172
Views
How to design an analysis pipeline for genes with SNPs by samples? Build a matrix?
SNP Variants
2.2 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
291
Views
Comment: C: Heatmap of methylation beta values scale='rows' seems off
2.2 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
291
Views
Comment: C: Heatmap of methylation beta values scale='rows' seems off
2.2 years ago
Pin.Bioinf • 240
0
Votes
7
Replies
291
Views
Heatmap of methylation beta values scale='rows' seems off
methylation beta-values heatmap z-score
2.2 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
291
Views
Comment: C: Heatmap of methylation beta values scale='rows' seems off
2.2 years ago
Pin.Bioinf • 240
0
Votes
0
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237
Views
nsolver p values for signature scores in pathways
nsolver pathifier pathways nanostring pvalue
2.2 years ago
Pin.Bioinf • 240
4
Votes
3
Replies
462
Views
How can I call somatic CNV in tumor samples with no reference (control) samples?
CNV tumor
2.2 years ago
Pin.Bioinf • 240 • updated 2.2 years ago
Kevin Blighe 43k
0
Votes
1
Reply
226
Views
Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
varscan CNA CNV SNP
2.3 years ago
Pin.Bioinf • 240 • updated 2.2 years ago
Biostar 20
0
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0
Replies
353
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Comment: C: CNV, CNA and SNP calling
2.3 years ago
Pin.Bioinf • 240
0
Votes
2
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353
Views
Comment: C: CNV, CNA and SNP calling
2.3 years ago
Pin.Bioinf • 240
4
Votes
5
Replies
353
Views
CNV, CNA and SNP calling
CNA CNV SNP
2.3 years ago
Pin.Bioinf • 240 • updated 2.3 years ago
Nicolas Rosewick 7.7k
0
Votes
0
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233
Views
Copy number alteration from .bam files panelcn.mops
panel CNV CNA cn.mops
2.3 years ago
Pin.Bioinf • 240
0
Votes
0
Replies
274
Views
Comment: C: bedgraph file format in IGV: good for observing CNV ?
2.3 years ago
Pin.Bioinf • 240
1
Vote
3
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274
Views
bedgraph file format in IGV: good for observing CNV ?
igv cnv bedgraph
2.3 years ago
Pin.Bioinf • 240
3
Votes
2
Replies
374
Views
How can I tell if there is CNV for specific gene in IGV?
cnv igv
2.3 years ago
Pin.Bioinf • 240 • updated 2.3 years ago
Vitis ♦ 2.1k
5
Votes
8
Replies
880
Views
Total RNA-Seq vs mRNA-Seq
RNA-Seq
2.3 years ago
Pin.Bioinf • 240 • updated 2.3 years ago
kristoffer.vittingseerup ♦ 1.8k
0
Votes
1
Reply
880
Views
Comment: A: Total RNA-Seq vs mRNA-Seq
2.3 years ago
Pin.Bioinf • 240
0
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2
Replies
880
Views
Comment: C: Total RNA-Seq vs mRNA-Seq
2.3 years ago
Pin.Bioinf • 240
0
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0
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617
Views
Comment: C: Can I compute Tumour Mutational Burden from rnaseq fastq files?
2.4 years ago
Pin.Bioinf • 240
2
Votes
2
Replies
617
Views
Can I compute Tumour Mutational Burden from rnaseq fastq files?
TMB RNA-Seq SNP VCF
2.4 years ago
Pin.Bioinf • 240
6
Votes
4
Replies
272
Views
Sequenced sample twice, can I merge the fastqs to analyze?
rnaseq fastq
2.4 years ago
Pin.Bioinf • 240 • updated 2.4 years ago
geek_y 9.7k
0
Votes
0
Replies
272
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Comment: C: Sequenced sample twice, can I merge the fastqs to analyze?
2.4 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
511
Views
Comment: C: Find out the mutation type from TCGA data
2.4 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
511
Views
Comment: C: Find out the mutation type from TCGA data
2.4 years ago
Pin.Bioinf • 240
0
Votes
0
Replies
375
Views
Answer: A: About TCGA CNV probes
2.4 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
511
Views
Comment: C: Find out the mutation type from TCGA data
2.4 years ago
Pin.Bioinf • 240
5
Votes
9
Replies
511
Views
Find out the mutation type from TCGA data
TCGA mutation melanoma
2.4 years ago
Pin.Bioinf • 240 • updated 2.4 years ago
Kevin Blighe 43k
0
Votes
0
Replies
511
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Comment: C: Find out the mutation type from TCGA data
2.4 years ago
Pin.Bioinf • 240
1
Vote
1
Reply
244
Views
lncPath deleted from CRAN
lncrnas R networks
2.4 years ago
Pin.Bioinf • 240 • updated 2.4 years ago
zx8754 7.5k
5
Votes
12
Replies
433
Views
25 DE genes with 8 samples and 4 DE genes with 16 samples
RNA-Seq DESeq2
2.5 years ago
Pin.Bioinf • 240 • updated 2.5 years ago
Biostar 20
1
Vote
0
Replies
433
Views
Comment: C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
2.5 years ago
Pin.Bioinf • 240
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