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Pin.Bioinf • 240
Status: New
Handle: @Pin.Bioinf38957
Reputation: 240
Email: i*********@gmail.com
Joined: 10 months ago
Last seen: 16 months ago
Location: Malaga

Im a Health Engineer with a Bioinformatics specialization doing epigenetics research.

Posts Awards
8
Votes
3
Replies
473
Views
All CpG sites in human genome RRBS
BSSeq RRBS Genome Human
18 months ago
Pin.Bioinf • 240 • updated 13 months ago
Illinu • 90
0
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2
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258
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C: What is the target region size for total rnaseq?
13 months ago
Pin.Bioinf • 240
0
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2
Replies
258
Views
C: What is the target region size for total rnaseq?
13 months ago
Pin.Bioinf • 240
0
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1
Reply
258
Views
C: What is the target region size for total rnaseq?
13 months ago
Pin.Bioinf • 240
0
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1
Reply
258
Views
C: What is the target region size for total rnaseq?
13 months ago
Pin.Bioinf • 240
5
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11
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258
Views
What is the target region size for total rnaseq?
RNA-Seq
13 months ago
Pin.Bioinf • 240
0
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0
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198
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From mpileup on bam files to TMB calculation, how is it done?
mutations TMB snps bam mpileup
13 months ago
Pin.Bioinf • 240
0
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0
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144
Views
How to check for the correlation between gene expression counts and clinical categorical variables?
correlations ANOVA clinical genecounts
14 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
178
Views
How to build a phylogenetic tree (breast cancer samples)
phylogenetic tree phylogenetics
14 months ago
Pin.Bioinf • 240
0
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1
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280
Views
C: Why some tumors are grouped with the controls?
15 months ago
Pin.Bioinf • 240
0
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1
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280
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C: Why some tumors are grouped with the controls?
15 months ago
Pin.Bioinf • 240
0
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1
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280
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C: Why some tumors are grouped with the controls?
15 months ago
Pin.Bioinf • 240
11
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7
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280
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Why some tumors are grouped with the controls?
Methylation cpgs
15 months ago
Pin.Bioinf • 240 • updated 15 months ago
Kevin Blighe 43k
0
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1
Reply
503
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C: Different samples order in .ped and phynotype data files
15 months ago
Pin.Bioinf • 240
0
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1
Reply
317
Views
C: PLINK assoc input: can it be two vcf files case/control?
15 months ago
Pin.Bioinf • 240
0
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1
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317
Views
C: PLINK assoc input: can it be two vcf files case/control?
15 months ago
Pin.Bioinf • 240
4
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5
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317
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PLINK assoc input: can it be two vcf files case/control?
PLINK vcf snps association
15 months ago
Pin.Bioinf • 240 • updated 15 months ago
Kevin Blighe 43k
0
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0
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265
Views
C: Comparing VCF files between two groups (15 vcf files against 15 vcf files)
15 months ago
Pin.Bioinf • 240
3
Votes
2
Replies
265
Views
Comparing VCF files between two groups (15 vcf files against 15 vcf files)
vcf SNP variants PLINK
15 months ago
Pin.Bioinf • 240 • updated 15 months ago
Raony Guimarães • 990
0
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0
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159
Views
How to design an analysis pipeline for genes with SNPs by samples? Build a matrix?
SNP Variants
15 months ago
Pin.Bioinf • 240
0
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1
Reply
275
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C: Heatmap of methylation beta values scale='rows' seems off
15 months ago
Pin.Bioinf • 240
0
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1
Reply
275
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C: Heatmap of methylation beta values scale='rows' seems off
15 months ago
Pin.Bioinf • 240
0
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7
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275
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Heatmap of methylation beta values scale='rows' seems off
methylation beta-values heatmap z-score
15 months ago
Pin.Bioinf • 240
0
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1
Reply
275
Views
C: Heatmap of methylation beta values scale='rows' seems off
15 months ago
Pin.Bioinf • 240
0
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0
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226
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nsolver p values for signature scores in pathways
nsolver pathifier pathways nanostring pvalue
15 months ago
Pin.Bioinf • 240
4
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3
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446
Views
How can I call somatic CNV in tumor samples with no reference (control) samples?
CNV tumor
16 months ago
Pin.Bioinf • 240 • updated 16 months ago
Kevin Blighe 43k
0
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1
Reply
211
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Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
varscan CNA CNV SNP
16 months ago
Pin.Bioinf • 240 • updated 16 months ago
Biostar 20
0
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0
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342
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C: CNV, CNA and SNP calling
16 months ago
Pin.Bioinf • 240
0
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2
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342
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C: CNV, CNA and SNP calling
16 months ago
Pin.Bioinf • 240
4
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5
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342
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CNV, CNA and SNP calling
CNA CNV SNP
16 months ago
Pin.Bioinf • 240 • updated 16 months ago
Nicolas Rosewick 7.7k
0
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0
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222
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Copy number alteration from .bam files panelcn.mops
panel CNV CNA cn.mops
16 months ago
Pin.Bioinf • 240
0
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0
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259
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C: bedgraph file format in IGV: good for observing CNV ?
16 months ago
Pin.Bioinf • 240
1
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3
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259
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bedgraph file format in IGV: good for observing CNV ?
igv cnv bedgraph
16 months ago
Pin.Bioinf • 240
3
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2
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359
Views
How can I tell if there is CNV for specific gene in IGV?
cnv igv
16 months ago
Pin.Bioinf • 240 • updated 16 months ago
Vitis ♦ 2.1k
5
Votes
8
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875
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Total RNA-Seq vs mRNA-Seq
RNA-Seq
17 months ago
Pin.Bioinf • 240 • updated 17 months ago
kristoffer.vittingseerup ♦ 1.8k
0
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1
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875
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A: Total RNA-Seq vs mRNA-Seq
17 months ago
Pin.Bioinf • 240
0
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2
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875
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C: Total RNA-Seq vs mRNA-Seq
17 months ago
Pin.Bioinf • 240
0
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0
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610
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C: Can I compute Tumour Mutational Burden from rnaseq fastq files?
17 months ago
Pin.Bioinf • 240
2
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2
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610
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Can I compute Tumour Mutational Burden from rnaseq fastq files?
TMB RNA-Seq SNP VCF
17 months ago
Pin.Bioinf • 240
6
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4
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262
Views
Sequenced sample twice, can I merge the fastqs to analyze?
rnaseq fastq
18 months ago
Pin.Bioinf • 240 • updated 18 months ago
geek_y 9.7k
0
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0
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262
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C: Sequenced sample twice, can I merge the fastqs to analyze?
18 months ago
Pin.Bioinf • 240
0
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1
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500
Views
C: Find out the mutation type from TCGA data
18 months ago
Pin.Bioinf • 240
0
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1
Reply
500
Views
C: Find out the mutation type from TCGA data
18 months ago
Pin.Bioinf • 240
0
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0
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367
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A: About TCGA CNV probes
18 months ago
Pin.Bioinf • 240
0
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1
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500
Views
C: Find out the mutation type from TCGA data
18 months ago
Pin.Bioinf • 240
5
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9
Replies
500
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Find out the mutation type from TCGA data
TCGA mutation melanoma
18 months ago
Pin.Bioinf • 240 • updated 18 months ago
Kevin Blighe 43k
0
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0
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500
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C: Find out the mutation type from TCGA data
18 months ago
Pin.Bioinf • 240
1
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1
Reply
233
Views
lncPath deleted from CRAN
lncrnas R networks
18 months ago
Pin.Bioinf • 240 • updated 18 months ago
zx8754 7.5k
5
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12
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425
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25 DE genes with 8 samples and 4 DE genes with 16 samples
RNA-Seq DESeq2
18 months ago
Pin.Bioinf • 240 • updated 18 months ago
Biostar 20
1
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0
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425
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C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
18 months ago
Pin.Bioinf • 240
0
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1
Reply
425
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C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
18 months ago
Pin.Bioinf • 240
0
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2
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425
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C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
18 months ago
Pin.Bioinf • 240
0
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1
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425
Views
C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
18 months ago
Pin.Bioinf • 240
0
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1
Reply
425
Views
C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
18 months ago
Pin.Bioinf • 240
8
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15
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406
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Good mean coverage but big std in coverage
bamqc qualimap coverage rnaseq
19 months ago
Pin.Bioinf • 240
0
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1
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406
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A: Good mean coverage but big std in coverage
19 months ago
Pin.Bioinf • 240
0
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2
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406
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A: Good mean coverage but big std in coverage
19 months ago
Pin.Bioinf • 240
0
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1
Reply
406
Views
C: Good mean coverage but big std in coverage
19 months ago
Pin.Bioinf • 240
0
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1
Reply
406
Views
A: Good mean coverage but big std in coverage
19 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
406
Views
C: Good mean coverage but big std in coverage
19 months ago
Pin.Bioinf • 240
1
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0
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654
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C: TCGA immunotherapy treated melanoma data
19 months ago
Pin.Bioinf • 240
0
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1
Reply
654
Views
C: TCGA immunotherapy treated melanoma data
19 months ago
Pin.Bioinf • 240
8
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6
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654
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TCGA immunotherapy treated melanoma data
mutation SNP download tcga
19 months ago
Pin.Bioinf • 240
0
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0
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654
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A: TCGA immunotherapy treated melanoma data
19 months ago
Pin.Bioinf • 240
3
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0
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872
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A: STAR --quantMode GeneCounts function
19 months ago
Pin.Bioinf • 240
2
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0
Replies
580
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A: Best pipeline for time course RNA-SEQ analysis for single cell organism
19 months ago
Pin.Bioinf • 240
1
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0
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368
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C: Integrating methylation in survival analysis
19 months ago
Pin.Bioinf • 240
2
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5
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368
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Integrating methylation in survival analysis
methylation survival RNA-Seq R
19 months ago
Pin.Bioinf • 240
3
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2
Replies
457
Views
Design for paired Deseq2 analysis
RNA-Seq deseq2
20 months ago
Pin.Bioinf • 240 • updated 20 months ago
wyzinasu • 30
2
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2
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253
Views
Ribosomal depletion percentage
ribosomal depletion RNA-Seq
20 months ago
Pin.Bioinf • 240
0
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1
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289
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C: Considering that the basal expression level is not 0 for the calculation of the
20 months ago
Pin.Bioinf • 240
0
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1
Reply
289
Views
C: Considering that the basal expression level is not 0 for the calculation of the
20 months ago
Pin.Bioinf • 240
0
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6
Replies
289
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Considering that the basal expression level is not 0 for the calculation of the differential expression
RNA-Seq DESEQ2 DifferentialExpression
20 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
334
Views
Plotting diff methylated regions along genes, island information?
methylation plots R
20 months ago
Pin.Bioinf • 240
1
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0
Replies
492
Views
A: common genes between DMRs and DEGs
21 months ago
Pin.Bioinf • 240
0
Votes
0
Replies
255
Views
Correlations 5hmC 5mC Spearmann significance
methylation rnaseq
22 months ago
Pin.Bioinf • 240 • updated 21 months ago
Biostar 20
0
Votes
0
Replies
258
Views
How to check for a variant (like *3) in public HepG2 cell line?
variants mutations HepG2
22 months ago
Pin.Bioinf • 240
0
Votes
0
Replies
656
Views
StringDB get enrichment KEGG
kegg enrichment R
24 months ago
Pin.Bioinf • 240 • updated 22 months ago
Biostar 20
0
Votes
2
Replies
342
Views
PLot betavalues many cpgs for conditions
betavalues plots
2.0 years ago
Pin.Bioinf • 240 • updated 22 months ago
Kevin Blighe 43k
1
Vote
1
Reply
246
Views
Do all genes have a similar distributions of CpG sites across regions?
methylation
22 months ago
Pin.Bioinf • 240 • updated 22 months ago
Devon Ryan 90k
0
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0
Replies
220
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Building a classifier model for sub tumours?
RNA-Seq model software error
22 months ago
Pin.Bioinf • 240
0
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1
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345
Views
C: expression and methylation integration
22 months ago
Pin.Bioinf • 240
2
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3
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345
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expression and methylation integration
cluster omics integration r
22 months ago
Pin.Bioinf • 240
0
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0
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571
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C: Help with heatmap
23 months ago
Pin.Bioinf • 240
9
Votes
16
Replies
571
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Help with heatmap
heatmap r expression rpkm
23 months ago
Pin.Bioinf • 240 • updated 23 months ago
Zhilong Jia ♦ 1.4k
0
Votes
2
Replies
488
Views
Plotting genomic features ggplot or others
R ggplot2 genomic features betavalues
2.0 years ago
Pin.Bioinf • 240 • updated 23 months ago
Biostar 20
1
Vote
0
Replies
359
Views
Finding partially methylated domains starting from Illumina 450K IDAT files
metylation illumina450 R
23 months ago
Pin.Bioinf • 240
0
Votes
0
Replies
447
Views
iClusterPlus no significant results
RNA-Seq Methyl-Seq data integration omics
23 months ago
Pin.Bioinf • 240
0
Votes
2
Replies
398
Views
plotting genomics tool, how can I get an image like this one?
plot rnaseq methyl chipseq
23 months ago
Pin.Bioinf • 240 • updated 23 months ago
Alex Reynolds 28k
0
Votes
0
Replies
220
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C: histone marks in my methylation data
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
220
Views
C: histone marks in my methylation data
23 months ago
Pin.Bioinf • 240
0
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0
Replies
220
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C: histone marks in my methylation data
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
220
Views
C: histone marks in my methylation data
23 months ago
Pin.Bioinf • 240
0
Votes
7
Replies
220
Views
histone marks in my methylation data
R methyl histone
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
373
Views
fantom5 enhancers GRCh38
enhancers genomics coordinates r fantom5
24 months ago
Pin.Bioinf • 240
3
Votes
1
Reply
818
Views
Nucleotide positions to chromosome positions
genome nucleotides notation
2.0 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
547
Views
How can I find the region coordinates of my methylation EPIC Illumina data?
Methylation Manifest RNA-Seq EPIC
2.0 years ago
Pin.Bioinf • 240 • updated 2.0 years ago
h.mon 25k
0
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0
Replies
464
Views
C: Matching methylation and expression with only 2 samples
2.0 years ago
Pin.Bioinf • 240
0
Votes
2
Replies
464
Views
Matching methylation and expression with only 2 samples
RNA-Seq integrating correlations methyl-seq
2.0 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
595
Views
A: Correlating methylation and expression do i need normalization?
2.0 years ago
Pin.Bioinf • 240
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