Biostar Beta. Not for public use.
Pin.Bioinf • 240
Status: New
Handle: @Pin.Bioinf38957
Reputation: 240
Email: i*********@gmail.com
Joined: 14 months ago
Last seen: 20 months ago
Location: Malaga

Im a Health Engineer with a Bioinformatics specialization doing epigenetics research.

Posts Awards
8
Votes
3
Replies
487
Views
All CpG sites in human genome RRBS
BSSeq RRBS Genome Human
22 months ago
Pin.Bioinf • 240 • updated 17 months ago
Illinu • 90
0
Votes
2
Replies
260
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Comment: C: What is the target region size for total rnaseq?
17 months ago
Pin.Bioinf • 240
0
Votes
2
Replies
260
Views
Comment: C: What is the target region size for total rnaseq?
17 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
260
Views
Comment: C: What is the target region size for total rnaseq?
17 months ago
Pin.Bioinf • 240
0
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1
Reply
260
Views
Comment: C: What is the target region size for total rnaseq?
17 months ago
Pin.Bioinf • 240
5
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11
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260
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What is the target region size for total rnaseq?
RNA-Seq
17 months ago
Pin.Bioinf • 240
0
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0
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208
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From mpileup on bam files to TMB calculation, how is it done?
mutations TMB snps bam mpileup
18 months ago
Pin.Bioinf • 240
0
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0
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157
Views
How to check for the correlation between gene expression counts and clinical categorical variables?
correlations ANOVA clinical genecounts
18 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
189
Views
How to build a phylogenetic tree (breast cancer samples)
phylogenetic tree phylogenetics
18 months ago
Pin.Bioinf • 240
0
Votes
1
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291
Views
Comment: C: Why some tumors are grouped with the controls?
19 months ago
Pin.Bioinf • 240
0
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1
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291
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Comment: C: Why some tumors are grouped with the controls?
19 months ago
Pin.Bioinf • 240
0
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1
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291
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Comment: C: Why some tumors are grouped with the controls?
19 months ago
Pin.Bioinf • 240
11
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7
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291
Views
Why some tumors are grouped with the controls?
Methylation cpgs
19 months ago
Pin.Bioinf • 240 • updated 19 months ago
Kevin Blighe 43k
0
Votes
1
Reply
512
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Comment: C: Different samples order in .ped and phynotype data files
19 months ago
Pin.Bioinf • 240
0
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1
Reply
328
Views
Comment: C: PLINK assoc input: can it be two vcf files case/control?
19 months ago
Pin.Bioinf • 240
0
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1
Reply
328
Views
Comment: C: PLINK assoc input: can it be two vcf files case/control?
19 months ago
Pin.Bioinf • 240
4
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5
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328
Views
PLINK assoc input: can it be two vcf files case/control?
PLINK vcf snps association
19 months ago
Pin.Bioinf • 240 • updated 19 months ago
Kevin Blighe 43k
0
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0
Replies
276
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Comment: C: Comparing VCF files between two groups (15 vcf files against 15 vcf files)
20 months ago
Pin.Bioinf • 240
3
Votes
2
Replies
276
Views
Comparing VCF files between two groups (15 vcf files against 15 vcf files)
vcf SNP variants PLINK
20 months ago
Pin.Bioinf • 240 • updated 20 months ago
Raony Guimarães • 990
0
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0
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169
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How to design an analysis pipeline for genes with SNPs by samples? Build a matrix?
SNP Variants
20 months ago
Pin.Bioinf • 240
0
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1
Reply
288
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Comment: C: Heatmap of methylation beta values scale='rows' seems off
20 months ago
Pin.Bioinf • 240
0
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1
Reply
288
Views
Comment: C: Heatmap of methylation beta values scale='rows' seems off
20 months ago
Pin.Bioinf • 240
0
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7
Replies
288
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Heatmap of methylation beta values scale='rows' seems off
methylation beta-values heatmap z-score
20 months ago
Pin.Bioinf • 240
0
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1
Reply
288
Views
Comment: C: Heatmap of methylation beta values scale='rows' seems off
20 months ago
Pin.Bioinf • 240
0
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0
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237
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nsolver p values for signature scores in pathways
nsolver pathifier pathways nanostring pvalue
20 months ago
Pin.Bioinf • 240
4
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3
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459
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How can I call somatic CNV in tumor samples with no reference (control) samples?
CNV tumor
20 months ago
Pin.Bioinf • 240 • updated 20 months ago
Kevin Blighe 43k
0
Votes
1
Reply
226
Views
Can I use VarScan for tumor_time2/tumor_time1 CNA and SNP calling?
varscan CNA CNV SNP
20 months ago
Pin.Bioinf • 240 • updated 20 months ago
Biostar 20
0
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0
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348
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Comment: C: CNV, CNA and SNP calling
20 months ago
Pin.Bioinf • 240
0
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2
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348
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Comment: C: CNV, CNA and SNP calling
20 months ago
Pin.Bioinf • 240
4
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5
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348
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CNV, CNA and SNP calling
CNA CNV SNP
20 months ago
Pin.Bioinf • 240 • updated 20 months ago
Nicolas Rosewick 7.7k
0
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0
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232
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Copy number alteration from .bam files panelcn.mops
panel CNV CNA cn.mops
20 months ago
Pin.Bioinf • 240
0
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0
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272
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Comment: C: bedgraph file format in IGV: good for observing CNV ?
20 months ago
Pin.Bioinf • 240
1
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3
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272
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bedgraph file format in IGV: good for observing CNV ?
igv cnv bedgraph
20 months ago
Pin.Bioinf • 240
3
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2
Replies
372
Views
How can I tell if there is CNV for specific gene in IGV?
cnv igv
20 months ago
Pin.Bioinf • 240 • updated 20 months ago
Vitis ♦ 2.1k
5
Votes
8
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877
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Total RNA-Seq vs mRNA-Seq
RNA-Seq
21 months ago
Pin.Bioinf • 240 • updated 21 months ago
kristoffer.vittingseerup ♦ 1.8k
0
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1
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877
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Comment: A: Total RNA-Seq vs mRNA-Seq
21 months ago
Pin.Bioinf • 240
0
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2
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877
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Comment: C: Total RNA-Seq vs mRNA-Seq
21 months ago
Pin.Bioinf • 240
0
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0
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617
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Comment: C: Can I compute Tumour Mutational Burden from rnaseq fastq files?
21 months ago
Pin.Bioinf • 240
2
Votes
2
Replies
617
Views
Can I compute Tumour Mutational Burden from rnaseq fastq files?
TMB RNA-Seq SNP VCF
21 months ago
Pin.Bioinf • 240
6
Votes
4
Replies
271
Views
Sequenced sample twice, can I merge the fastqs to analyze?
rnaseq fastq
22 months ago
Pin.Bioinf • 240 • updated 22 months ago
geek_y 9.7k
0
Votes
0
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271
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Comment: C: Sequenced sample twice, can I merge the fastqs to analyze?
22 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
511
Views
Comment: C: Find out the mutation type from TCGA data
22 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
511
Views
Comment: C: Find out the mutation type from TCGA data
22 months ago
Pin.Bioinf • 240
0
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0
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373
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Answer: A: About TCGA CNV probes
22 months ago
Pin.Bioinf • 240
0
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1
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511
Views
Comment: C: Find out the mutation type from TCGA data
22 months ago
Pin.Bioinf • 240
5
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9
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511
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Find out the mutation type from TCGA data
TCGA mutation melanoma
22 months ago
Pin.Bioinf • 240 • updated 22 months ago
Kevin Blighe 43k
0
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0
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511
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Comment: C: Find out the mutation type from TCGA data
22 months ago
Pin.Bioinf • 240
1
Vote
1
Reply
239
Views
lncPath deleted from CRAN
lncrnas R networks
22 months ago
Pin.Bioinf • 240 • updated 22 months ago
zx8754 7.5k
5
Votes
12
Replies
432
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25 DE genes with 8 samples and 4 DE genes with 16 samples
RNA-Seq DESeq2
23 months ago
Pin.Bioinf • 240 • updated 23 months ago
Biostar 20
1
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0
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432
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Comment: C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
432
Views
Comment: C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
23 months ago
Pin.Bioinf • 240
0
Votes
2
Replies
432
Views
Comment: C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
432
Views
Comment: C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
432
Views
Comment: C: 25 DE genes with 8 samples and 4 DE genes with 16 samples
23 months ago
Pin.Bioinf • 240
8
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15
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423
Views
Good mean coverage but big std in coverage
bamqc qualimap coverage rnaseq
23 months ago
Pin.Bioinf • 240
0
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1
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423
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Comment: A: Good mean coverage but big std in coverage
23 months ago
Pin.Bioinf • 240
0
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2
Replies
423
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Comment: A: Good mean coverage but big std in coverage
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
423
Views
Comment: C: Good mean coverage but big std in coverage
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
423
Views
Comment: A: Good mean coverage but big std in coverage
23 months ago
Pin.Bioinf • 240
0
Votes
1
Reply
423
Views
Comment: C: Good mean coverage but big std in coverage
23 months ago
Pin.Bioinf • 240
1
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0
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664
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Comment: C: TCGA immunotherapy treated melanoma data
23 months ago
Pin.Bioinf • 240
0
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1
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664
Views
Comment: C: TCGA immunotherapy treated melanoma data
23 months ago
Pin.Bioinf • 240
8
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6
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664
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TCGA immunotherapy treated melanoma data
mutation SNP download tcga
23 months ago
Pin.Bioinf • 240
0
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0
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664
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Comment: A: TCGA immunotherapy treated melanoma data
23 months ago
Pin.Bioinf • 240
3
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0
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877
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Answer: A: STAR --quantMode GeneCounts function
23 months ago
Pin.Bioinf • 240
2
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0
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589
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Answer: A: Best pipeline for time course RNA-SEQ analysis for single cell organism
23 months ago
Pin.Bioinf • 240
1
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0
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376
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Comment: C: Integrating methylation in survival analysis
23 months ago
Pin.Bioinf • 240
2
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5
Replies
376
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Integrating methylation in survival analysis
methylation survival RNA-Seq R
23 months ago
Pin.Bioinf • 240
3
Votes
2
Replies
467
Views
Design for paired Deseq2 analysis
RNA-Seq deseq2
2.0 years ago
Pin.Bioinf • 240 • updated 2.0 years ago
wyzinasu • 30
2
Votes
2
Replies
259
Views
Ribosomal depletion percentage
ribosomal depletion RNA-Seq
2.0 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
298
Views
Comment: C: Considering that the basal expression level is not 0 for the calculation of the
2.0 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
298
Views
Comment: C: Considering that the basal expression level is not 0 for the calculation of the
2.0 years ago
Pin.Bioinf • 240
0
Votes
6
Replies
298
Views
Considering that the basal expression level is not 0 for the calculation of the differential expression
RNA-Seq DESEQ2 DifferentialExpression
2.0 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
342
Views
Plotting diff methylated regions along genes, island information?
methylation plots R
2.1 years ago
Pin.Bioinf • 240
1
Vote
0
Replies
506
Views
Answer: A: common genes between DMRs and DEGs
2.1 years ago
Pin.Bioinf • 240
0
Votes
0
Replies
259
Views
Correlations 5hmC 5mC Spearmann significance
methylation rnaseq
2.2 years ago
Pin.Bioinf • 240 • updated 2.1 years ago
Biostar 20
0
Votes
0
Replies
267
Views
How to check for a variant (like *3) in public HepG2 cell line?
variants mutations HepG2
2.2 years ago
Pin.Bioinf • 240
0
Votes
0
Replies
664
Views
StringDB get enrichment KEGG
kegg enrichment R
2.3 years ago
Pin.Bioinf • 240 • updated 2.2 years ago
Biostar 20
0
Votes
2
Replies
349
Views
PLot betavalues many cpgs for conditions
betavalues plots
2.4 years ago
Pin.Bioinf • 240 • updated 2.2 years ago
Kevin Blighe 43k
1
Vote
1
Reply
249
Views
Do all genes have a similar distributions of CpG sites across regions?
methylation
2.2 years ago
Pin.Bioinf • 240 • updated 2.2 years ago
Devon Ryan 90k
0
Votes
0
Replies
226
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Building a classifier model for sub tumours?
RNA-Seq model software error
2.2 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
358
Views
Comment: C: expression and methylation integration
2.2 years ago
Pin.Bioinf • 240
2
Votes
3
Replies
358
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expression and methylation integration
cluster omics integration r
2.2 years ago
Pin.Bioinf • 240
0
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0
Replies
585
Views
Comment: C: Help with heatmap
2.2 years ago
Pin.Bioinf • 240
9
Votes
16
Replies
585
Views
Help with heatmap
heatmap r expression rpkm
2.3 years ago
Pin.Bioinf • 240 • updated 2.3 years ago
Zhilong Jia ♦ 1.4k
0
Votes
2
Replies
499
Views
Plotting genomic features ggplot or others
R ggplot2 genomic features betavalues
2.4 years ago
Pin.Bioinf • 240 • updated 2.3 years ago
Biostar 20
1
Vote
0
Replies
360
Views
Finding partially methylated domains starting from Illumina 450K IDAT files
metylation illumina450 R
2.3 years ago
Pin.Bioinf • 240
0
Votes
0
Replies
460
Views
iClusterPlus no significant results
RNA-Seq Methyl-Seq data integration omics
2.3 years ago
Pin.Bioinf • 240
0
Votes
2
Replies
407
Views
plotting genomics tool, how can I get an image like this one?
plot rnaseq methyl chipseq
2.3 years ago
Pin.Bioinf • 240 • updated 2.3 years ago
Alex Reynolds 28k
0
Votes
0
Replies
232
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Comment: C: histone marks in my methylation data
2.3 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
232
Views
Comment: C: histone marks in my methylation data
2.3 years ago
Pin.Bioinf • 240
0
Votes
0
Replies
232
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Comment: C: histone marks in my methylation data
2.3 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
232
Views
Comment: C: histone marks in my methylation data
2.3 years ago
Pin.Bioinf • 240
0
Votes
7
Replies
232
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histone marks in my methylation data
R methyl histone
2.3 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
384
Views
fantom5 enhancers GRCh38
enhancers genomics coordinates r fantom5
2.3 years ago
Pin.Bioinf • 240
3
Votes
1
Reply
826
Views
Nucleotide positions to chromosome positions
genome nucleotides notation
2.4 years ago
Pin.Bioinf • 240
0
Votes
1
Reply
555
Views
How can I find the region coordinates of my methylation EPIC Illumina data?
Methylation Manifest RNA-Seq EPIC
2.4 years ago
Pin.Bioinf • 240 • updated 2.4 years ago
h.mon 25k
0
Votes
0
Replies
472
Views
Comment: C: Matching methylation and expression with only 2 samples
2.4 years ago
Pin.Bioinf • 240
0
Votes
2
Replies
472
Views
Matching methylation and expression with only 2 samples
RNA-Seq integrating correlations methyl-seq
2.4 years ago
Pin.Bioinf • 240
2
Votes
3
Replies
601
Views
Correlating methylation and expression do i need normalization?
RNA-Seq methyl-seq correlations
2.4 years ago
Pin.Bioinf • 240
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