Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
2.2k
views
Comment: Comment: Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
2.9 years ago by msimmer92 ▴ 300
0
votes
0
replies
2.2k
views
Comment: Comment: Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
2.9 years ago by msimmer92 ▴ 300
2
votes
3
replies
2.2k
views
Gold standard for bulk RNA-seq downsampling - number of uniquely mapped reads
uniquely RNA-seq mapping bulk downsampling
2.9 years ago by msimmer92 ▴ 300
1
vote
0
replies
5.5k
views
Comment: Comment: How to filter out a list of specific genes from the DESeq object in R - bulk RNA
3.0 years ago by msimmer92 ▴ 300
9
votes
4
replies
5.5k
views
How to filter out a list of specific genes from the DESeq object in R - bulk RNA-seq differential expression
R bulk object DESeq2 filter
3.0 years ago by msimmer92 ▴ 300
0
votes
3
replies
1.6k
views
Generalizing snakemake MACS2 code - WildcardError Wildcards in input files cannot be determined from output files: 'sample'
snakemake
updated 3.9 years ago by 22k • written 4.0 years ago by ▴ 300
0
votes
0
replies
1.6k
views
Comment: C: Generalizing snakemake MACS2 code - WildcardError Wildcards in input files canno
4.0 years ago by msimmer92 ▴ 300
2
votes
0
replies
3.8k
views
Answer: A: Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/c
4.1 years ago by msimmer92 ▴ 300
5
votes
4
replies
3.8k
views
Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/cwl in rule
snakemake syntaxerror rule keywords
4.1 years ago by msimmer92 ▴ 300
0
votes
1
reply
3.8k
views
Comment: C: Snakemake SyntaxError: No rule keywords allowed after run/shell/script/wrapper/c
4.1 years ago by msimmer92 ▴ 300
0
votes
1
reply
8.9k
views
Comment: C: If we use MACS2 do we need to remove duplicate sequences with samtools rmdup ?
4.3 years ago by msimmer92 ▴ 300
0
votes
0
replies
1.7k
views
Comment: C: Heterogeneity from bulk ChIP-seq or ATAC-seq data
4.4 years ago by msimmer92 ▴ 300
0
votes
1
reply
9.2k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
4.4 years ago by msimmer92 ▴ 300
2
votes
3
replies
1.7k
views
Heterogeneity from bulk ChIP-seq or ATAC-seq data
heterogeneity ChIP-seq ATAC-seq clustering
updated 4.5 years ago by ★ 16k • written 4.5 years ago by ▴ 300
0
votes
1
reply
2.8k
views
Comment: C: Downsampling single-end human ChIP-seq data
4.8 years ago by msimmer92 ▴ 300
0
votes
0
replies
3.4k
views
Comment: C: Get all gene symbol in kegg pathway with clusterProfiler
4.8 years ago by msimmer92 ▴ 300
0
votes
0
replies
2.8k
views
Comment: C: Downsampling single-end human ChIP-seq data
4.8 years ago by msimmer92 ▴ 300
0
votes
1
reply
2.8k
views
Comment: C: Downsampling single-end human ChIP-seq data
4.8 years ago by msimmer92 ▴ 300
7
votes
7
replies
2.8k
views
Downsampling single-end human ChIP-seq data
ChIP-Seq downsampling subsampling
updated 4.8 years ago by ★ 1.1k • written 4.8 years ago by ▴ 300
4
votes
7
replies
2.5k
views
How to properly organize a DiffBind analysis to normalize data across conditions (ChIP-seq)
diffbind R ChIP-Seq
updated 4.9 years ago by 81k • written 4.9 years ago by ▴ 300
0
votes
0
replies
2.5k
views
Comment: C: How to properly organize a DiffBind analysis to normalize data across conditions
4.9 years ago by msimmer92 ▴ 300
0
votes
1
reply
2.5k
views
Comment: C: How to properly organize a DiffBind analysis to normalize data across conditions
4.9 years ago by msimmer92 ▴ 300
0
votes
2
replies
2.5k
views
Comment: C: How to properly organize a DiffBind analysis to normalize data across conditions
4.9 years ago by msimmer92 ▴ 300
0
votes
0
replies
9.2k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
4.9 years ago by msimmer92 ▴ 300
0
votes
1
reply
9.2k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
4.9 years ago by msimmer92 ▴ 300
1
vote
0
replies
2.1k
views
Answer: A: How to zoom out to whole genome view in UCSC browser?
4.9 years ago by msimmer92 ▴ 300
6
votes
5
replies
2.1k
views
How to zoom out to whole genome view in UCSC browser?
UCSC browser bigWig
4.9 years ago by msimmer92 ▴ 300
0
votes
1
reply
5.7k
views
Comment: C: How to compare bigwig tracks of two ATAC libraries.
4.9 years ago by msimmer92 ▴ 300
0
votes
0
replies
31k
views
Comment: C: Converstion of BED with scores into bigWig
5.0 years ago by msimmer92 ▴ 300
0
votes
0
replies
31k
views
Comment: C: Converstion of BED with scores into bigWig
5.0 years ago by msimmer92 ▴ 300
0
votes
1
reply
31k
views
Comment: C: Converstion of BED with scores into bigWig
5.0 years ago by msimmer92 ▴ 300
1
vote
0
replies
31k
views
Comment: C: Converstion of BED with scores into bigWig
5.0 years ago by msimmer92 ▴ 300
1
vote
1
reply
2.1k
views
How to interpret fast or multiQC reports of easy HiC or HiC data
HiC easyHiC fastqc
5.0 years ago by msimmer92 ▴ 300
0
votes
0
replies
2.1k
views
Comment: C: How to zoom out to whole genome view in UCSC browser?
5.0 years ago by msimmer92 ▴ 300
1
vote
2
replies
70k
views
Comment: C: Is My Bam File Sorted ?
5.0 years ago by msimmer92 ▴ 300
0
votes
0
replies
2.1k
views
Comment: C: How to zoom out to whole genome view in UCSC browser?
5.1 years ago by msimmer92 ▴ 300
0
votes
0
replies
2.8k
views
Comment: C: Can bedtools subtract support multiple files?
5.1 years ago by msimmer92 ▴ 300
2
votes
2
replies
2.8k
views
Can bedtools subtract support multiple files?
bedtools
5.1 years ago by msimmer92 ▴ 300
0
votes
0
replies
11k
views
Comment: C: how to add bed files together
5.1 years ago by msimmer92 ▴ 300
0
votes
1
reply
11k
views
Comment: C: how to add bed files together
5.1 years ago by msimmer92 ▴ 300
0
votes
0
replies
11k
views
Comment: C: how to add bed files together
5.1 years ago by msimmer92 ▴ 300
0
votes
0
replies
28k
views
Comment: C: What is the difference between narrow peak, Broad peak and a gapped peak of a c
5.1 years ago by msimmer92 ▴ 300
0
votes
1
reply
9.2k
views
Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
5.1 years ago by msimmer92 ▴ 300
0
votes
0
replies
6.4k
views
Comment: C: MACS2 for K27me3 peak calling
5.1 years ago by msimmer92 ▴ 300
3
votes
8
replies
9.2k
views
DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' length
R DiffBind ChIP-Seq
5.1 years ago by msimmer92 ▴ 300
0
votes
1
reply
1.7k
views
R's DiffBind. Error in pv.DBAplotVolcano(DBA, contrast = contrast, method = method,: object 'sigSites' not found
DiffBind R ChIP-Seq
updated 5.1 years ago by 8.9k • written 5.1 years ago by ▴ 300
0
votes
0
replies
2.7k
views
Comment: C: How to correlate chip seq peaks?
5.2 years ago by msimmer92 ▴ 300
0
votes
1
reply
3.6k
views
Comment: C: Unexpected hump in GC content distribution from FasQC report in ChIP-seq
5.2 years ago by msimmer92 ▴ 300
4
votes
10
replies
3.6k
views
Unexpected hump in GC content distribution from FasQC report in ChIP-seq
ChIP-Seq fastqc quality
5.2 years ago by msimmer92 ▴ 300
0
votes
1
reply
3.6k
views
Comment: C: Unexpected hump in GC content distribution from FasQC report in ChIP-seq
5.2 years ago by msimmer92 ▴ 300
98 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6