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finswimmer ♦ 11k
Role: New
Status: New
Handle: @finswimmer37605
Reputation: 11100
Email: f*********@gmail.com
Joined: 8 months ago
Last seen: 4 months ago
Location: Germany

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107
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Comment: C: No reads in IGV at the positions indicated by the bed file
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8 months ago
finswimmer 11k
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125
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Answer: A: tabix to exclude chromosomes from vcf
2 Votes | 0 Replies
8 months ago
finswimmer 11k
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93
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Comment: C: snpEff for bacteria genome
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8 months ago
finswimmer 11k
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Answer: C: Exclude sites on the basis of the proportion of missing data using BCFTOOLS
3 Votes | 0 Replies
8 months ago
finswimmer 11k
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Comment: C: Available tools that can pick up the the alignment with highest mapping quality
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8 months ago
finswimmer 11k
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95
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Comment: C: Setting resource limits works for SSH logins but not local logins
0 Votes | 1 Reply
8 months ago
finswimmer 11k
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159
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Answer: A: samtools SNP calling
2 Votes | 1 Reply
8 months ago
finswimmer 11k
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139
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Comment: C: Any database can substitute OMIM?
0 Votes | 1 Reply
8 months ago
finswimmer 11k
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159
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Comment: C: Replacing missing SNPs of one individual with reference alleles in a vcf file
1 Vote | 2 Replies
8 months ago
finswimmer 11k
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115
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Answer: A: awk to organize bed file
3 Votes | 1 Reply
9 months ago
finswimmer 11k
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134
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Comment: C: get consensus sequence from bam file with insertions
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9 months ago
finswimmer 11k
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134
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Comment: C: get consensus sequence from bam file with insertions
0 Votes | 2 Replies
9 months ago
finswimmer 11k
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128
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Comment: C: Extracting MAF for a list of SNPs
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9 months ago
finswimmer 11k
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186
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Comment: C: Merge contigs in fasta file
0 Votes | 1 Reply
9 months ago
finswimmer 11k
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186
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Answer: A: Merge contigs in fasta file
2 Votes | 1 Reply
9 months ago
finswimmer 11k
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113
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Answer: A: Which reference genome for the annotation of the 1KG variant data by snpEff?
1 Vote | 1 Reply
9 months ago
finswimmer 11k
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203
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Comment: C: checkVCF File "./checkVCF.py", line 67 errors
2 Votes | 0 Replies
9 months ago
finswimmer 11k
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133
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Comment: C: Python code for extracting values from an Excel database?
0 Votes | 1 Reply
9 months ago
finswimmer 11k
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134
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Comment: C: Fail to generate .bai index with samtools
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9 months ago
finswimmer 11k • updated 9 months ago
RamRS 21k
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226
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Comment: C: filter unique variants from multiple VCF files
0 Votes | 1 Reply
9 months ago
finswimmer 11k
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163
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Answer: A: Finding if dbSNP type in biomart
1 Vote | 1 Reply
9 months ago
finswimmer 11k
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226
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Comment: C: filter unique variants from multiple VCF files
0 Votes | 1 Reply
9 months ago
finswimmer 11k
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226
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Comment: C: filter unique variants from multiple VCF files
0 Votes | 1 Reply
9 months ago
finswimmer 11k
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176
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Comment: C: How can I see the low frequency SNP
0 Votes | 1 Reply
9 months ago
finswimmer 11k
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150
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Answer: A: How to Deduplicate files
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9 months ago
finswimmer 11k
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195
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Comment: C: How to pivot pandas dataframe?
1 Vote | 0 Replies
9 months ago
finswimmer 11k
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195
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Answer: C: How to pivot pandas dataframe?
1 Vote | 1 Reply
9 months ago
finswimmer 11k
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154
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Comment: C: IGV - identification of sequencing errors
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9 months ago
finswimmer 11k
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Comment: C: Do you know some way to remove the stop codons in an alignment and replace the s
1 Vote | 2 Replies
9 months ago
finswimmer 11k
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154
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Comment: C: Aligning Multiple paired end files together
0 Votes | 1 Reply
9 months ago
finswimmer 11k
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208
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Comment: C: Extracting CIGAR string from a specific region of a read in a bam file using pys
0 Votes | 0 Replies
9 months ago
finswimmer 11k
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193
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Comment: C: little discrepancies gnomAD DB vs. website
0 Votes | 1 Reply
9 months ago
finswimmer 11k
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166
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Comment: C: New to Linux. How do I install apt-get?
0 Votes | 0 Replies
9 months ago
finswimmer 11k
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212
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Answer: A: How to extract entire info column from VCF file using bcftools
0 Votes | 1 Reply
10 months ago
finswimmer 11k
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230
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Comment: C: compare two columns of two files
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10 months ago
finswimmer 11k
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190
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Comment: C: BBMap and Samtools show different values for mean inner distance between mate pa
0 Votes | 1 Reply
10 months ago
finswimmer 11k
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190
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Comment: C: BBMap and Samtools show different values for mean inner distance between mate pa
0 Votes | 1 Reply
10 months ago
finswimmer 11k
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172
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Comment: C: call haplotypes in GATK HaplotypeCaller
0 Votes | 1 Reply
10 months ago
finswimmer 11k
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167
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Answer: A: Want to loop through list of BLAST objects in python
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10 months ago
finswimmer 11k
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
0 Votes | 2 Replies
10 months ago
finswimmer 11k
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