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finswimmer 11k
Role: Moderator
Status: New
Handle: @finswimmer37605
Status: New
Reputation: 11100
Email: f*********@gmail.com
Joined: 4 months ago
Last seen: 24 days ago
Location: Germany

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1,464 results • Page 1 of 37
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Comment: C: No reads in IGV at the positions indicated by the bed file
4 months ago finswimmer 11k
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95
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Answer: A: tabix to exclude chromosomes from vcf
4 months ago finswimmer 11k
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1
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66
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Comment: C: snpEff for bacteria genome
4 months ago finswimmer 11k
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83
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Answer: C: Exclude sites on the basis of the proportion of missing data using BCFTOOLS
4 months ago finswimmer 11k
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64
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Comment: C: Available tools that can pick up the the alignment with highest mapping quality
4 months ago finswimmer 11k
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1
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70
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Comment: C: Setting resource limits works for SSH logins but not local logins
4 months ago finswimmer 11k
2
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1
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131
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Answer: A: samtools SNP calling
4 months ago finswimmer 11k
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1
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115
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Comment: C: Any database can substitute OMIM?
4 months ago finswimmer 11k
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2
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133
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Comment: C: Replacing missing SNPs of one individual with reference alleles in a vcf file
4 months ago finswimmer 11k
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1
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91
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Answer: A: awk to organize bed file
5 months ago finswimmer 11k
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108
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Comment: C: get consensus sequence from bam file with insertions
5 months ago finswimmer 11k
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2
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108
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Comment: C: get consensus sequence from bam file with insertions
5 months ago finswimmer 11k
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112
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Comment: C: Extracting MAF for a list of SNPs
5 months ago finswimmer 11k
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1
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161
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Comment: C: Merge contigs in fasta file
5 months ago finswimmer 11k
2
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1
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161
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Answer: A: Merge contigs in fasta file
5 months ago finswimmer 11k
1
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1
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100
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Answer: A: Which reference genome for the annotation of the 1KG variant data by snpEff?
5 months ago finswimmer 11k
2
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190
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Comment: C: checkVCF File "./checkVCF.py", line 67 errors
5 months ago finswimmer 11k
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113
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Comment: C: Python code for extracting values from an Excel database?
5 months ago finswimmer 11k
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120
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Comment: C: Fail to generate .bai index with samtools
5 months ago finswimmer 11k • updated 5 months ago RamRS 21k
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192
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Comment: C: filter unique variants from multiple VCF files
5 months ago finswimmer 11k
1
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1
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133
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Answer: A: Finding if dbSNP type in biomart
5 months ago finswimmer 11k
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1
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192
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Comment: C: filter unique variants from multiple VCF files
5 months ago finswimmer 11k
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1
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192
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Comment: C: filter unique variants from multiple VCF files
5 months ago finswimmer 11k
0
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1
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143
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Comment: C: How can I see the low frequency SNP
5 months ago finswimmer 11k
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139
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Answer: A: How to Deduplicate files
5 months ago finswimmer 11k
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174
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Comment: C: How to pivot pandas dataframe?
5 months ago finswimmer 11k
1
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1
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174
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Answer: C: How to pivot pandas dataframe?
5 months ago finswimmer 11k
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133
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Comment: C: IGV - identification of sequencing errors
5 months ago finswimmer 11k
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2
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222
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Comment: C: Do you know some way to remove the stop codons in an alignment and replace the s
5 months ago finswimmer 11k
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1
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133
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Comment: C: Aligning Multiple paired end files together
5 months ago finswimmer 11k
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181
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Comment: C: Extracting CIGAR string from a specific region of a read in a bam file using pys
5 months ago finswimmer 11k
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1
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174
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Comment: C: little discrepancies gnomAD DB vs. website
5 months ago finswimmer 11k
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146
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Comment: C: New to Linux. How do I install apt-get?
5 months ago finswimmer 11k
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1
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196
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Answer: A: How to extract entire info column from VCF file using bcftools
5 months ago finswimmer 11k
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1
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202
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Comment: C: compare two columns of two files
5 months ago finswimmer 11k
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1
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170
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Comment: C: BBMap and Samtools show different values for mean inner distance between mate pa
5 months ago finswimmer 11k
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1
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170
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Comment: C: BBMap and Samtools show different values for mean inner distance between mate pa
5 months ago finswimmer 11k
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1
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154
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Comment: C: call haplotypes in GATK HaplotypeCaller
6 months ago finswimmer 11k
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142
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Answer: A: Want to loop through list of BLAST objects in python
6 months ago finswimmer 11k
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2
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195
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
6 months ago finswimmer 11k
1,464 results • Page 1 of 37
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