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finswimmer ♦ 11k
Role: Moderator
Status: New
Handle: @finswimmer37605
Reputation: 11100
Joined: 20 months ago
Last seen: 12 months ago
Location: Germany

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Comment: C: No reads in IGV at the positions indicated by the bed file
20 months ago
finswimmer 11k
2
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170
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Answer: A: tabix to exclude chromosomes from vcf
20 months ago
finswimmer 11k
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125
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Comment: C: snpEff for bacteria genome
20 months ago
finswimmer 11k
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141
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Answer: C: Exclude sites on the basis of the proportion of missing data using BCFTOOLS
21 months ago
finswimmer 11k
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107
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Comment: C: Available tools that can pick up the the alignment with highest mapping quality
21 months ago
finswimmer 11k
2
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199
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Answer: A: samtools SNP calling
21 months ago
finswimmer 11k
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159
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Comment: C: Any database can substitute OMIM?
21 months ago
finswimmer 11k
1
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189
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Comment: C: Replacing missing SNPs of one individual with reference alleles in a vcf file
21 months ago
finswimmer 11k
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146
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Answer: A: awk to organize bed file
21 months ago
finswimmer 11k
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167
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Comment: C: get consensus sequence from bam file with insertions
21 months ago
finswimmer 11k
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167
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Comment: C: get consensus sequence from bam file with insertions
21 months ago
finswimmer 11k
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145
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Comment: C: Extracting MAF for a list of SNPs
21 months ago
finswimmer 11k
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210
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Comment: C: Merge contigs in fasta file
21 months ago
finswimmer 11k
2
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1
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210
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Answer: A: Merge contigs in fasta file
21 months ago
finswimmer 11k
1
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1
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142
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Answer: A: Which reference genome for the annotation of the 1KG variant data by snpEff?
21 months ago
finswimmer 11k
2
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233
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Comment: C: checkVCF File "./checkVCF.py", line 67 errors
21 months ago
finswimmer 11k
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164
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Comment: C: Python code for extracting values from an Excel database?
21 months ago
finswimmer 11k
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152
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Comment: C: Fail to generate .bai index with samtools
22 months ago
finswimmer 11k • updated 22 months ago
RamRS 21k
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272
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Comment: C: filter unique variants from multiple VCF files
22 months ago
finswimmer 11k
1
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202
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Answer: A: Finding if dbSNP type in biomart
22 months ago
finswimmer 11k
0
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272
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Comment: C: filter unique variants from multiple VCF files
22 months ago
finswimmer 11k
0
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1
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272
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Comment: C: filter unique variants from multiple VCF files
22 months ago
finswimmer 11k
0
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1
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204
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Comment: C: How can I see the low frequency SNP
22 months ago
finswimmer 11k
0
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164
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Answer: A: How to Deduplicate files
22 months ago
finswimmer 11k
1
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226
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Comment: C: How to pivot pandas dataframe?
22 months ago
finswimmer 11k
1
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1
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226
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Answer: C: How to pivot pandas dataframe?
22 months ago
finswimmer 11k
0
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181
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Comment: C: IGV - identification of sequencing errors
22 months ago
finswimmer 11k
1
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294
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Comment: C: Do you know some way to remove the stop codons in an alignment and replace the s
22 months ago
finswimmer 11k
0
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1
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183
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Comment: C: Aligning Multiple paired end files together
22 months ago
finswimmer 11k
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234
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Comment: C: Extracting CIGAR string from a specific region of a read in a bam file using pys
22 months ago
finswimmer 11k
0
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1
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221
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Comment: C: little discrepancies gnomAD DB vs. website
22 months ago
finswimmer 11k
0
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232
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Answer: A: How to extract entire info column from VCF file using bcftools
22 months ago
finswimmer 11k
0
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1
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275
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Comment: C: compare two columns of two files
22 months ago
finswimmer 11k
0
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1
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213
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Comment: C: BBMap and Samtools show different values for mean inner distance between mate pa
22 months ago
finswimmer 11k
0
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213
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Comment: C: BBMap and Samtools show different values for mean inner distance between mate pa
22 months ago
finswimmer 11k
0
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1
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205
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Comment: C: call haplotypes in GATK HaplotypeCaller
22 months ago
finswimmer 11k
0
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197
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Answer: A: Want to loop through list of BLAST objects in python
22 months ago
finswimmer 11k
0
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2
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246
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Comment: C: BCF Tools Filter on 1000Genomes Annotation
22 months ago
finswimmer 11k
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1
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274
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Comment: C: grep command on VCF
22 months ago
finswimmer 11k
1
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236
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Comment: C: Edit score column in bed file
22 months ago
finswimmer 11k
0
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1
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284
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Comment: C: samtools fixmate: Couldn't write to output file: Broken pipe
22 months ago
finswimmer 11k
1
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1
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287
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Comment: C: GATK4.1.1.0---HaplotypeCaller :HaplotypeCallerEngine - Disabling physical phasin
23 months ago
finswimmer 11k
0
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2
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261
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Comment: C: How to turn current VCF into a VCF with genotype and rsID in same file
23 months ago
finswimmer 11k
1
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203
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Comment: C: bcftools FORMAT/FOO annotation to specific sample in multiple sample VCF
23 months ago
finswimmer 11k
0
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1
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261
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Comment: C: How to turn current VCF into a VCF with genotype and rsID in same file
23 months ago
finswimmer 11k
1
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1
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304
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Comment: C: shell question: How to run multiple paired end alignment in shell?
23 months ago
finswimmer 11k
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210
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Comment: C: GATK4: an error with VariantRecalibrator
23 months ago
finswimmer 11k
0
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1
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242
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Comment: C: How to filter fastq paired-end reads based on Per Tile Sequence Quality
23 months ago
finswimmer 11k
0
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151
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Comment: C: How to retrieve cDNA sequences from EMBL for a large number of accessions?
23 months ago
finswimmer 11k
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170
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Comment: C: I have a list of chromosomes, positions, gene ids, and transcript ids (from a ge
23 months ago
finswimmer 11k
1,425 results • Page 1 of 29
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