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692
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Comment: Comment: --normalizeUsing RPGC
3 months ago by Amitm ★ 2.2k
0
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1
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788
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Comment: Comment: VCF indexing
6 months ago by Amitm ★ 2.2k
1
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1
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616
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Comment: Comment: Issue VEP installation MacOS
6 months ago by Amitm ★ 2.2k
0
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0
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939
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Comment: Comment: differences between trajectories in conditions with Monocle3 or other tools
6 months ago by Amitm ★ 2.2k
1
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1
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939
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Comment: Comment: differences between trajectories in conditions with Monocle3 or other tools
6 months ago by Amitm ★ 2.2k
2
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1
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1.0k
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Comment: Comment: Integrated Seurat object change name of the two conditions
6 months ago by Amitm ★ 2.2k
0
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1
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1.0k
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Comment: Comment: Integrated Seurat object change name of the two conditions
6 months ago by Amitm ★ 2.2k
1
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1
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932
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Comment: Comment: Using STAR aligner to build index of hg38
6 months ago by Amitm ★ 2.2k
1
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0
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3.9k
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Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
9 months ago by Amitm ★ 2.2k
0
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1
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1.3k
views
Answer: Answer: IGV coverage bar has color, but no mutation?
14 months ago by Amitm ★ 2.2k
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0
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3.0k
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Comment: Comment: R Columns to Seurat Object
14 months ago by Amitm ★ 2.2k
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1
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3.0k
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Comment: Comment: R Columns to Seurat Object
14 months ago by Amitm ★ 2.2k
1
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1
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1.6k
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Answer: Answer: Need help understanding reference transcriptome and where to download
14 months ago by Amitm ★ 2.2k
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1
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3.0k
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Comment: Comment: R Columns to Seurat Object
14 months ago by Amitm ★ 2.2k
1
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1
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3.0k
views
Answer: Answer: R Columns to Seurat Object
14 months ago by Amitm ★ 2.2k
1
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1
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533
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Comment: Comment: Mutation callin For RNASeq
16 months ago by Amitm ★ 2.2k
0
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0
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2.1k
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Comment: Comment: Can't convert SRA to FASTQ with fasterq-dump. fasterq-dump was killed (signal 9
16 months ago by Amitm ★ 2.2k
2
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1
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1.5k
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Answer: Answer: How to download the entire Run from Basespace illumina
16 months ago by Amitm ★ 2.2k
0
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0
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4.1k
views
Comment: Comment: how to interpret a CNV scatter plot
17 months ago by Amitm ★ 2.2k
0
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1
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6.9k
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Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
3.3 years ago by Amitm ★ 2.2k
0
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1
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6.9k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
3.3 years ago by Amitm ★ 2.2k
0
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1
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6.9k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
3.3 years ago by Amitm ★ 2.2k
0
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1
reply
6.9k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
3.3 years ago by Amitm ★ 2.2k
1
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1
reply
1.4k
views
Comment: C: Error in GATK HaplotypeCaller
3.3 years ago by Amitm ★ 2.2k
0
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1
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1.4k
views
Comment: C: Error in GATK HaplotypeCaller
3.3 years ago by Amitm ★ 2.2k
0
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1
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6.9k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
3.3 years ago by Amitm ★ 2.2k
0
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2
replies
6.9k
views
Comment: C: STAR and StringTie to identify novel isoforms (please check my work)
3.3 years ago by Amitm ★ 2.2k
3
votes
1
reply
830
views
Answer: C: Detecting CNVs from BAM file
3.3 years ago by Amitm ★ 2.2k
1
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1
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6.9k
views
Answer: A: STAR and StringTie to identify novel isoforms (please check my work)
3.3 years ago by Amitm ★ 2.2k
0
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0
replies
1.1k
views
Comment: C: How to create coverage graph/plot for an entire Illumina run
3.3 years ago by Amitm ★ 2.2k
1
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1
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1.6k
views
Comment: C: Platypus variant caller error
3.3 years ago by Amitm ★ 2.2k
1
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1
reply
1.6k
views
Comment: C: Platypus variant caller error
3.3 years ago by Amitm ★ 2.2k
0
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2
replies
1.6k
views
Comment: C: Platypus variant caller error
3.3 years ago by Amitm ★ 2.2k
0
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1
reply
1.3k
views
Comment: C: How to identify mRNA 3' UTR by bulk RNA-seq data
3.5 years ago by Amitm ★ 2.2k
0
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1
reply
1.3k
views
Comment: C: Platypus variant caller error
3.5 years ago by Amitm ★ 2.2k
1
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2
replies
4.1k
views
Comment: C: how to interpret a CNV scatter plot
3.6 years ago by Amitm ★ 2.2k
4
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1
reply
4.1k
views
Answer: C: how to interpret a CNV scatter plot
3.6 years ago by Amitm ★ 2.2k
0
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0
replies
1.9k
views
Comment: C: Annotating VCF files
3.6 years ago by Amitm ★ 2.2k
0
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0
replies
1.2k
views
Comment: C: Creating bed file for gene specific variant extraction from VCF file
3.6 years ago by Amitm ★ 2.2k
1
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1
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2.2k
views
Comment: C: De novo transcriptome from PE reads with high multi-mapping rate (Bowtie2)
3.6 years ago by Amitm ★ 2.2k
0
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2
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1.2k
views
Answer: A: Creating bed file for gene specific variant extraction from VCF file
3.6 years ago by Amitm ★ 2.2k
0
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1
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1.5k
views
Comment: C: WES or WGS
3.6 years ago by Amitm ★ 2.2k
0
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1
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5.7k
views
Comment: C: how to get the installation histort of conda
3.6 years ago by Amitm ★ 2.2k
2
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1
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2.2k
views
Answer: A: TSS of canonical transcripts
3.6 years ago by Amitm ★ 2.2k
0
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1
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867
views
Comment: C: Getting huge size of CNV region from CNV-kit with hybrid data.
3.7 years ago by Amitm ★ 2.2k
0
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0
replies
2.4k
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Comment: C: Stringtie duplicate transcripts
4.0 years ago by Amitm ★ 2.2k
0
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0
replies
1.5k
views
Comment: C: VCF to maf
4.1 years ago by Amitm ★ 2.2k
1
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1
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1.4k
views
Comment: C: Suggestion needed for finding fusion transcripts
4.2 years ago by Amitm ★ 2.2k
1
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0
replies
915
views
Answer: C: Classifying normal vs cancer tissues from mutational data
4.2 years ago by Amitm ★ 2.2k
4
votes
2
replies
1.4k
views
Answer: C: Suggestion needed for finding fusion transcripts
4.2 years ago by Amitm ★ 2.2k
280 results • Page 1 of 6
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