Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
1
vote
2
replies
318
views
BAM to CRAM and BAM recover with smaller size
BAM samtools CRAM
updated 17 days ago by ★ 1.2k • written 5 weeks ago by ▴ 360
0
votes
0
replies
10k
views
Answer: Answer: bedGraphToBigWig Install error
8 months ago by geocarvalho ▴ 360
0
votes
0
replies
3.6k
views
Answer: Answer: How to run Picard docker image
10 months ago by geocarvalho ▴ 360
1
vote
0
replies
7.6k
views
Answer: Answer: filtering the reads based on the length
11 months ago by geocarvalho ▴ 360
0
votes
0
replies
7.2k
views
Comment: Comment: filter reads in BAM having a tag
11 months ago by geocarvalho ▴ 360
3
votes
0
replies
3.1k
views
Comment: Comment: Paternity Testing from WGS Trio
11 months ago by geocarvalho ▴ 360
0
votes
0
replies
1.3k
views
Answer: Answer: Removing multi-variant records from vcf file
11 months ago by geocarvalho ▴ 360
0
votes
0
replies
888
views
Answer: Answer: GATK4 ASEReadCounter Function of VCF
11 months ago by geocarvalho ▴ 360
0
votes
0
replies
88k
views
Comment: Comment: Extract Sub-Set Of Regions From Vcf File
12 months ago by geocarvalho ▴ 360
0
votes
0
replies
5.6k
views
Answer: Answer: How to access specifically 30x NA12878 sequencing runs
17 days ago by geocarvalho ▴ 360
1
vote
0
replies
1.3k
views
Comment: Comment: Understanding bam tracks
19 months ago by geocarvalho ▴ 360
0
votes
1
reply
2.2k
views
Comment: Comment: How to retrieve the SNP data from Bam file
2.2 years ago by geocarvalho ▴ 360
0
votes
1
reply
4.7k
views
Comment: Comment: Copy Number Variation Tools
2.3 years ago by geocarvalho ▴ 360
4
votes
0
replies
7.7k
views
Answer: Answer: snpEFF not able to download GRCH38 ?
2.6 years ago by geocarvalho ▴ 360
0
votes
1
reply
88k
views
Comment: Comment: Extract Sub-Set Of Regions From Vcf File
2.9 years ago by geocarvalho ▴ 360
0
votes
0
replies
599
views
Comment: C: Variant not annotated by ANNOVAR in the main transcript
3.2 years ago by geocarvalho ▴ 360
0
votes
1
reply
599
views
Variant not annotated by ANNOVAR in the main transcript
Annovar Variant Annotation Transcript Exome
3.2 years ago by geocarvalho ▴ 360
1
vote
0
replies
23k
views
Answer: A: Where to download blacklisted regions?
3.8 years ago by geocarvalho ▴ 360
0
votes
1
reply
1.5k
views
Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
3.9 years ago by geocarvalho ▴ 360
6
votes
8
replies
1.5k
views
Differential DNA methylation for each sample using Illumina HumanMethylation450 BeadChip dataset
R methylation humanmethylation450 limma
updated 3.9 years ago by 8.2k • written 3.9 years ago by ▴ 360
0
votes
1
reply
1.5k
views
Comment: C: Differential DNA methylation for each sample using Illumina HumanMethylation450
3.9 years ago by geocarvalho ▴ 360
0
votes
0
replies
5.3k
views
Comment: C: Using limma to find differentially methylated probes across clusters
3.9 years ago by geocarvalho ▴ 360
1
vote
0
replies
2.0k
views
Answer: A: CNV and pseudogenes
3.9 years ago by geocarvalho ▴ 360
0
votes
0
replies
205k
views
Comment: C: How To Update R In Ubuntu ?
4.1 years ago by geocarvalho ▴ 360
9
votes
1
reply
88k
views
Answer: A: Extract Sub-Set Of Regions From Vcf File
updated 4.3 years ago by 43k • written 6.6 years ago by ▴ 360
0
votes
0
replies
2.3k
views
Answer: A: Trying to Identify larger indels from NGS data, FASTQ format
5.0 years ago by geocarvalho ▴ 360
1
vote
0
replies
2.5k
views
Comment: C: Identifying CNVs from targeted amplicon sequencing
5.1 years ago by geocarvalho ▴ 360
0
votes
1
reply
2.5k
views
Comment: C: Identifying CNVs from targeted amplicon sequencing
5.1 years ago by geocarvalho ▴ 360
0
votes
0
replies
19k
views
Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.1 years ago by geocarvalho ▴ 360
0
votes
1
reply
19k
views
Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.2 years ago by geocarvalho ▴ 360
1
vote
2
replies
19k
views
Comment: C: bcl2fastq2: how to correctly use the --use-bases-mask for different sequencing m
5.2 years ago by geocarvalho ▴ 360
0
votes
0
replies
1.6k
views
Answer: A: Annotation tool for cnvKit
5.4 years ago by geocarvalho ▴ 360
0
votes
0
replies
2.7k
views
Comment: C: how to fix error in getGEO function?
5.7 years ago by geocarvalho ▴ 360
0
votes
1
reply
2.7k
views
Comment: C: how to fix error in getGEO function?
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 360
0
votes
0
replies
1.7k
views
Answer: A: Bioinformatics workshop or training courses
5.7 years ago by geocarvalho ▴ 360
0
votes
0
replies
1.3k
views
Answer: A: Large deletions in exome sequencing data
5.9 years ago by geocarvalho ▴ 360
2
votes
1
reply
2.5k
views
Answer: A: Identifying CNVs from targeted amplicon sequencing
5.9 years ago by geocarvalho ▴ 360
0
votes
0
replies
2.9k
views
Answer: A: Plotting common SNPs from four individual from a vcf file
6.2 years ago by geocarvalho ▴ 360
2
votes
0
replies
2.5k
views
Answer: A: R books with Quantitative Genetics examples?
6.2 years ago by geocarvalho ▴ 360
1
vote
0
replies
1.4k
views
Answer: A: Packages/modules for CNV, Indels, SNPs analysis
6.2 years ago by geocarvalho ▴ 360
0
votes
0
replies
4.0k
views
Comment: C: vcfeval Error: No sample name provided but calls is a multi-sample VCF
6.3 years ago by geocarvalho ▴ 360
4
votes
0
replies
13k
views
Answer: A: List all available databases for ANNOVAR
6.3 years ago by geocarvalho ▴ 360
2
votes
0
replies
4.0k
views
Answer: A: vcfeval Error: No sample name provided but calls is a multi-sample VCF
6.3 years ago by geocarvalho ▴ 360
0
votes
1
reply
2.0k
views
Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
6.5 years ago by geocarvalho ▴ 360
1
vote
0
replies
1.6k
views
Answer: A: Where can I find a sample analysis pipeline for DNA?
7.0 years ago by geocarvalho ▴ 360
1
vote
0
replies
2.1k
views
Comment: C: Bioinformatics Data Analyst, University of Pennsylvania, Philadelphia
7.0 years ago by geocarvalho ▴ 360
0
votes
1
reply
1.6k
views
Answer: A: Different reference and variant allele in IonTorrent variantCaller
7.0 years ago by geocarvalho ▴ 360
1
vote
0
replies
4.7k
views
Answer: A: Copy Number Variation Tools
7.1 years ago by geocarvalho ▴ 360
0
votes
0
replies
6.6k
views
Answer: A: Annotation of Structural Variants and CNVs
7.1 years ago by geocarvalho ▴ 360
49 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6