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comments
2
votes
1
reply
369
views
RNA-Seq expression analysis
RNA-seq
nextflow
heatmap
gene-expression
updated 10 weeks ago by
dthorbur
★ 1.9k • written 11 weeks ago by
Ric
▴ 430
0
votes
1
reply
869
views
Polishing PacBio or ONT with Illumina
pacbio
polish
ONT
illumina
updated 13 months ago by
mathias.lorieux
• 0 • written 2.4 years ago by
Ric
▴ 430
4
votes
6
replies
2.0k
views
Removing a DOT after each sequence
sequence
bioawk
updated 14 months ago by
Jeremy
▴ 880 • written 3.5 years ago by
Ric
▴ 430
0
votes
1
reply
510
views
expansions and contractions from OrthoFinder
protein
python
orthofinder
updated 14 months ago by
mohammadhassanj
▴ 260 • written 14 months ago by
Ric
▴ 430
0
votes
1
reply
829
views
Comment:
Comment: Manually order the set fails in UpsetR
16 months ago by
Ric
▴ 430
0
votes
4
replies
829
views
Manually order the set fails in UpsetR
r
ggplot2
upsetr
updated 16 months ago by
Ram
43k • written 16 months ago by
Ric
▴ 430
1
vote
3
replies
833
views
UpSetR plot of Orthofinder results failed
upsetR
r
orthofinder
plot
updated 17 months ago by
zx8754
11k • written 17 months ago by
Ric
▴ 430
0
votes
0
replies
2.1k
views
Comment:
Comment: Upset plot using python
17 months ago by
Ric
▴ 430
4
votes
2
replies
2.1k
views
Upset plot using python
python
orthofinder
upset
17 months ago by
Ric
▴ 430
0
votes
0
replies
4.6k
views
Comment:
Comment: map gene gain loss on species tree
17 months ago by
Ric
▴ 430
0
votes
2
replies
833
views
Iso-seq mapping and annotation
alignment
mapping
iso-seq
annotation
updated 2.2 years ago by
William Rowell
▴ 280 • written 2.2 years ago by
Ric
▴ 430
0
votes
1
reply
579
views
Could not find <WellSample> in input dataset. Will not add BioSamples to output XMLs
rna
pacbio
ccs
iso-seq
lima
updated 2.2 years ago by
William Rowell
▴ 280 • written 2.2 years ago by
Ric
▴ 430
6
votes
16
replies
5.4k
views
10 follow
Annotation pipelines in 2018
assembly
RNA-Seq
genome
gene
updated 2.2 years ago by
BioinformaticBird
▴ 110 • written 5.7 years ago by
Ric
▴ 430
0
votes
0
replies
826
views
Comment:
Comment: SnpEff does not create htmlStats
2.4 years ago by
Ric
▴ 430
0
votes
2
replies
826
views
SnpEff does not create htmlStats
snpeff
snps
2.4 years ago by
Ric
▴ 430
0
votes
1
reply
2.5k
views
Comment:
Comment: diamond seems to run out of memory
2.4 years ago by
Ric
▴ 430
0
votes
0
replies
2.5k
views
Comment:
Comment: diamond seems to run out of memory
2.4 years ago by
Ric
▴ 430
0
votes
2
replies
2.5k
views
Comment:
Comment: diamond seems to run out of memory
2.5 years ago by
Ric
▴ 430
3
votes
7
replies
2.5k
views
diamond seems to run out of memory
alignment
gene
updated 2.4 years ago by
buchfink
▴ 250 • written 2.5 years ago by
Ric
▴ 430
1
vote
1
reply
844
views
How to train annotations tools
genome
annotation
gene
updated 2.5 years ago by
Philipp Bayer
8.3k • written 2.5 years ago by
Ric
▴ 430
0
votes
1
reply
671
views
overlaps between subfeatures in the underlying annotation
annotation
gene
updated 2.5 years ago by
lieven.sterck
15k • written 2.5 years ago by
Ric
▴ 430
0
votes
2
replies
1.0k
views
Protein filtering for annotation
genbank
annotation
gene
updated 2.5 years ago by
lieven.sterck
15k • written 2.5 years ago by
Ric
▴ 430
1
vote
1
reply
585
views
Avoiding Manual Gene Curation
annotation
gene
updated 2.6 years ago by
GenoMax
141k • written 2.6 years ago by
Ric
▴ 430
2
votes
1
reply
759
views
Retrieving sequences and Blast them
blast
updated 2.6 years ago by
Philipp Bayer
8.3k • written 2.6 years ago by
Ric
▴ 430
0
votes
1
reply
964
views
Comment:
Comment: plant viruses sequences
2.7 years ago by
Ric
▴ 430
2
votes
3
replies
964
views
plant viruses sequences
alignment
gene
updated 2.7 years ago by
GenoMax
141k • written 2.7 years ago by
Ric
▴ 430
0
votes
0
replies
520
views
tree in newick format for
gene
newick
MCScanX
2.9 years ago by
Ric
▴ 430
1
vote
1
reply
2.8k
views
sam_hrecs_error Malformed key:value pair
alignment
updated 3.0 years ago by
GenoMax
141k • written 4.2 years ago by
Ric
▴ 430
2
votes
1
reply
4.5k
views
Comment:
C: Running r8s on Unix system
3.2 years ago by
Ric
▴ 430
0
votes
1
reply
824
views
exon skipping and intron retention analyse
RNA-Seq
alignment
gene
updated 3.1 years ago by
boluda.navarro
• 0 • written 3.2 years ago by
Ric
▴ 430
5
votes
3
replies
1.9k
views
comparing annotations between genomes.
annotation
gff
liftOver
CrossMap
updated 3.4 years ago by
Priyam
▴ 20 • written 6.3 years ago by
Ric
▴ 430
0
votes
0
replies
1.4k
views
Comment:
C: bcftools for plant SNPs
3.5 years ago by
Ric
▴ 430
1
vote
2
replies
1.4k
views
bcftools for plant SNPs
SNP
sequence
updated 3.5 years ago by
Pierre Lindenbaum
161k • written 3.5 years ago by
Ric
▴ 430
0
votes
0
replies
1.3k
views
bcf: unknown file type
snp
updated 3.5 years ago by
Pierre Lindenbaum
161k • written 3.5 years ago by
Ric
▴ 430
0
votes
1
reply
2.0k
views
Comment:
C: Removing a DOT after each sequence
3.5 years ago by
Ric
▴ 430
1
vote
1
reply
1.0k
views
GO annotations into GFF3
annotation
go
updated 3.5 years ago by
JC
13k • written 3.5 years ago by
Ric
▴ 430
0
votes
1
reply
1.4k
views
Comment:
C: Reactome Plant to Cytoscape - possible?
3.6 years ago by
Ric
▴ 430
0
votes
0
replies
693
views
Reactome for Plants
pathway
gene
annotation
3.6 years ago by
Ric
▴ 430
0
votes
1
reply
1.2k
views
Comment:
C: InterProScan for Plants
3.6 years ago by
Ric
▴ 430
0
votes
0
replies
560
views
Non redundant ID associating with GO and Pathway
alignment
GO
pathway
3.6 years ago by
Ric
▴ 430
0
votes
3
replies
1.2k
views
InterProScan for Plants
gene
protein
annotation
pathways
ontology
3.6 years ago by
Ric
▴ 430
0
votes
1
reply
705
views
Finding common and different genes between species
RNA-Seq
gene
annotation
3.6 years ago by
Ric
▴ 430
2
votes
2
replies
928
views
pathway analysis in plants
Assembly
gene
annotation
analysis
pathway
updated 3.7 years ago by
Tm
★ 1.1k • written 3.7 years ago by
Ric
▴ 430
2
votes
2
replies
1.1k
views
annotation with Augustus
gene
genome
annotation
augustus
3.7 years ago by
Ric
▴ 430
2
votes
1
reply
1.1k
views
Answer:
A: annotation with Augustus
3.7 years ago by
Ric
▴ 430
2
votes
1
reply
1.0k
views
Failed to merge BAM files
bash
samtools
updated 3.8 years ago by
Shalu Jhanwar
▴ 520 • written 3.8 years ago by
Ric
▴ 430
0
votes
0
replies
1.2k
views
orthomcl to venn diagram
orthomcl
family genes
ortholog
venn diagram
3.8 years ago by
Ric
▴ 430
0
votes
1
reply
9.6k
views
Comment:
C: Create de novo repeat library
4.0 years ago by
Ric
▴ 430
0
votes
0
replies
1.6k
views
Comment:
C: StringTie output to train Augustus
4.0 years ago by
Ric
▴ 430
0
votes
1
reply
656
views
StringTie required filtered BAM
RNA-Seq
gene
annotation
assembly
updated 4.0 years ago by
Kristoffer Vitting-Seerup
★ 4.0k • written 4.0 years ago by
Ric
▴ 430
292 results • Page
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