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Martombo ♦ 2.4k
Status: New
Handle: @Martombo3007
Reputation: 2420
Email: m*********@gmail.com
Joined: 12 months ago
Last seen: 14 months ago
Location: Seville, ES

Posts Awards
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0
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115
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C: Error in some hog codes using pyham
12 months ago
Martombo ♦ 2.4k
0
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1
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213
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C: Removing adaptors from smallRNA seq data
12 months ago
Martombo ♦ 2.4k
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1
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213
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C: Removing adaptors from smallRNA seq data
13 months ago
Martombo ♦ 2.4k
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1
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347
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C: Selecting the consensus/overlapped genes from the DE study
13 months ago
Martombo ♦ 2.4k
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1
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169
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C: Finding the best combination of covarites in a multivariate linear regression
13 months ago
Martombo ♦ 2.4k
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2.4k
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C: how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
13 months ago
Martombo ♦ 2.4k
1
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0
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270
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C: Question about differentially expressed genes selection for low sample size data
14 months ago
Martombo ♦ 2.4k
0
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1
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271
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C: Differential analysis using cell-line data with replicate information
14 months ago
Martombo ♦ 2.4k
1
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0
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122
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A: Co-expression analysis for genes coexpressed with gene X, genes X and Y, etc.
14 months ago
Martombo ♦ 2.4k
1
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0
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419
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C: natural log used in Seurat for differential expression
17 months ago
Martombo ♦ 2.4k
0
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1
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682
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C: Read count difference between STAR and Bowtie
19 months ago
Martombo ♦ 2.4k
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1
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421
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C: STAR Splice Junctions normalization
19 months ago
Martombo ♦ 2.4k
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0
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286
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A: RNA-binding motifs matching
19 months ago
Martombo ♦ 2.4k
1
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0
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229
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A: comparing two ratios in RNASeq data
19 months ago
Martombo ♦ 2.4k
2
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1
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713
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C: R read.table() saying line does not have correct number of elements - when I che
20 months ago
Martombo ♦ 2.4k
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0
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713
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C: R read.table() saying line does not have correct number of elements - when I che
20 months ago
Martombo ♦ 2.4k
0
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0
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334
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A: Quantifying repetitive elements in RNA-seqs
20 months ago
Martombo ♦ 2.4k
1
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1
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324
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C: DESEQ2 control vs multiple treatment
20 months ago
Martombo ♦ 2.4k
1
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1
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510
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C: Find out the mutation type from TCGA data
21 months ago
Martombo ♦ 2.4k
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0
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240
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C: For Generating PPI
21 months ago
Martombo ♦ 2.4k
0
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1
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456
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C: Low mapping percentage with TopHat
21 months ago
Martombo ♦ 2.4k
4
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1
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554
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C: unable to count reads that are aligned to coding region
21 months ago
Martombo ♦ 2.4k
1
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0
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1.4k
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C: GSEA on single-cell cluster data
21 months ago
Martombo ♦ 2.4k
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0
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313
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C: RSEM tool installation error
21 months ago
Martombo ♦ 2.4k
2
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1
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526
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C: Advice on running a differential expression analysis on patients with slightly d
21 months ago
Martombo ♦ 2.4k
1
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1
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506
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C: Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
21 months ago
Martombo ♦ 2.4k
1
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1
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506
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C: Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
21 months ago
Martombo ♦ 2.4k
0
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1
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565
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C: RNA-seq analysis of two species
21 months ago
Martombo ♦ 2.4k
1
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1
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733
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C: STAR index doesn't finish
21 months ago
Martombo ♦ 2.4k
0
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1
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454
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C: Performing differential expression study on isoforms
21 months ago
Martombo ♦ 2.4k
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1
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454
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C: Performing differential expression study on isoforms
21 months ago
Martombo ♦ 2.4k
1
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0
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423
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A: The tools to plot the saturation curve for RNA-Seq
21 months ago
Martombo ♦ 2.4k
1
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1
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347
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C: Selecting the consensus/overlapped genes from the DE study
21 months ago
Martombo ♦ 2.4k
1
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0
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742
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C: Is it possible to analyze differentially expressed genes without sample replicat
21 months ago
Martombo ♦ 2.4k
0
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0
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1.9k
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C: Biological variation within replicate groups, not much DE
4.4 years ago
Martombo ♦ 2.4k • updated 21 months ago
RamRS 21k
1
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293
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C: GO Enrichment for non model orlganisms
22 months ago
Martombo ♦ 2.4k
1
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0
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1.7k
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C: how to calculate the log FC for -1.5 fold change?
23 months ago
Martombo ♦ 2.4k
0
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1
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466
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C: How to run Py-script 300 times with 3 new variables and a new output-file each t
2.0 years ago
Martombo ♦ 2.4k
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0
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1.6k
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C: RNA-Seq counts for all genes?
2.0 years ago
Martombo ♦ 2.4k
3
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0
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371
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C: Bioinformatics project manager for NGS center
2.0 years ago
Martombo ♦ 2.4k
2
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2
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569
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C: Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction
2.1 years ago
Martombo ♦ 2.4k
0
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0
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287
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A: Mutation in one gene in TCGA data
2.1 years ago
Martombo ♦ 2.4k
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1
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1.1k
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C: Gene Co-expression analysis with less number of replicates
2.1 years ago
Martombo ♦ 2.4k
1
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0
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823
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C: Why DE genes are not among highly variable genes between groups
2.2 years ago
Martombo ♦ 2.4k
0
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0
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652
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C: Selection of hub gene on the basis of node degree
2.2 years ago
Martombo ♦ 2.4k
1
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1
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1.8k
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C: Normalization and differential analysis in ATAC-seq data
2.2 years ago
Martombo ♦ 2.4k
0
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0
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545
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C: project of MutsigCV/ MuSic
2.3 years ago
Martombo ♦ 2.4k
1
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1
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545
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A: project of MutsigCV/ MuSic
2.3 years ago
Martombo ♦ 2.4k
1
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1
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539
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C: pythonic equivalent to reduce() in R GRanges - how to collapse ranged data?
2.3 years ago
Martombo ♦ 2.4k
1
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1
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417
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A: Identifying enriched pathways that overlap among a range of databases
2.3 years ago
Martombo ♦ 2.4k
1
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0
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891
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C: On the significance of the overlap between lists of genes
2.3 years ago
Martombo ♦ 2.4k
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0
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503
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C: Categorize patients based on continuous variables
2.3 years ago
Martombo ♦ 2.4k
1
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1
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503
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C: Categorize patients based on continuous variables
2.3 years ago
Martombo ♦ 2.4k
0
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1
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532
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C: Coverage of methylation txt files
2.4 years ago
Martombo ♦ 2.4k
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0
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870
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C: Can't make sva comparison despite very distinct batch effects
2.4 years ago
Martombo ♦ 2.4k
1
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1
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1.0k
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C: RNA-Seq DGE using PCA components as covariate
2.4 years ago
Martombo ♦ 2.4k
1
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0
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1.0k
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A: RNA-Seq DGE using PCA components as covariate
2.4 years ago
Martombo ♦ 2.4k
0
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0
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907
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C: Why are DESeq2 size factors not null in case of sparse count matrix?
2.4 years ago
Martombo ♦ 2.4k
1
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2
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907
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C: Why are DESeq2 size factors not null in case of sparse count matrix?
2.4 years ago
Martombo ♦ 2.4k
1
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2
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907
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C: Why are DESeq2 size factors not null in case of sparse count matrix?
2.4 years ago
Martombo ♦ 2.4k
2
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1
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1.1k
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C: Size difference between Bam file and sort-bam file
2.4 years ago
Martombo ♦ 2.4k
1
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1
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1.0k
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A: Many DESeq2 P values are 0 thus preventing generation of a rank list for GSEA
2.4 years ago
Martombo ♦ 2.4k
0
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0
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623
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C: Recommendations for dN/dS software for balancing selection scan
2.4 years ago
Martombo ♦ 2.4k
0
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1
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623
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C: Recommendations for dN/dS software for balancing selection scan
2.4 years ago
Martombo ♦ 2.4k
0
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0
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378
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A: Interpreting the output of an mRNA structural motif search algorithm
2.4 years ago
Martombo ♦ 2.4k
3
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0
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476
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A: Trimmomatic destroys right-hand paired-end sequences, how to avoid?
2.4 years ago
Martombo ♦ 2.4k
0
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0
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541
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C: pre-miRNA annotation and quantification
2.4 years ago
Martombo ♦ 2.4k
1
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0
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629
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C: How do I subset gene loci with no difference from DeSeq2 output?
2.4 years ago
Martombo ♦ 2.4k
1
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1
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772
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C: Why does GO enrichment result give different results when gene list cutoff chang
2.4 years ago
Martombo ♦ 2.4k
0
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0
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779
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C: GC content in DNA sequnce
2.5 years ago
Martombo ♦ 2.4k
2
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1
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4.9k
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A: chart title in plotly (R)
2.5 years ago
Martombo ♦ 2.4k
1
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0
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952
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C: Why does cufflinks split this transcript?
2.5 years ago
Martombo ♦ 2.4k
1
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1
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952
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C: Why does cufflinks split this transcript?
2.5 years ago
Martombo ♦ 2.4k
1
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0
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1.6k
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C: topGO is performing enrichment test on GO terms that are not present in my datas
2.5 years ago
Martombo ♦ 2.4k
1
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1
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952
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C: Why does cufflinks split this transcript?
2.5 years ago
Martombo ♦ 2.4k
0
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1
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952
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C: Why does cufflinks split this transcript?
2.5 years ago
Martombo ♦ 2.4k
1
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1
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952
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C: Why does cufflinks split this transcript?
2.5 years ago
Martombo ♦ 2.4k
0
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1
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620
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C: RNA seq- without a control
2.5 years ago
Martombo ♦ 2.4k
1
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0
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620
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C: RNA seq- without a control
2.5 years ago
Martombo ♦ 2.4k
0
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0
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1.4k
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C: How to get each exon counts from TCGA
2.6 years ago
Martombo ♦ 2.4k
0
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0
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1.4k
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A: How to get each exon counts from TCGA
2.6 years ago
Martombo ♦ 2.4k
0
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0
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2.1k
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C: Why Warning: reads with missing mate encountered is occured in HTSeq?
2.6 years ago
Martombo ♦ 2.4k
0
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1
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2.1k
Views
C: Why Warning: reads with missing mate encountered is occured in HTSeq?
2.6 years ago
Martombo ♦ 2.4k
0
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0
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6.9k
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A: In simple words - what is k-mer??
2.6 years ago
Martombo ♦ 2.4k
3
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1
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2.1k
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A: Why Warning: reads with missing mate encountered is occured in HTSeq?
2.6 years ago
Martombo ♦ 2.4k
0
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0
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2.7k
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C: Alternatives to Venn Diagrams
2.6 years ago
Martombo ♦ 2.4k
0
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1
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1.3k
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C: Bioinformatical sleuthing: log2 fold-change vs log2 fold-change scatterplot has
2.7 years ago
Martombo ♦ 2.4k
0
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1
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3.6k
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C: DESeq2: Find differentially expressed genes specific to one condition
3.1 years ago
Martombo ♦ 2.4k
1
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1
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3.6k
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A: DESeq2: Find differentially expressed genes specific to one condition
3.1 years ago
Martombo ♦ 2.4k
0
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1
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1.9k
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C: Strange MA-plot using DESeq2
3.5 years ago
Martombo ♦ 2.4k
3
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3
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3.3k
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different output format in Clustal-Omega
Clustal File format bash
6.1 years ago
Martombo ♦ 2.4k • updated 3.5 years ago
Biostar 20
0
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1
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1.4k
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C: Job1: Bioinformatician/Computational biologist Postdoc Position at the European
3.6 years ago
Martombo ♦ 2.4k
3
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0
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12k
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C: GO enrichment analysis using R
3.6 years ago
Martombo ♦ 2.4k
4
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2
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3.3k
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A: How basemean/basemeanA/basemeanB and log2foldchange are counted in DESeq2 ?
3.7 years ago
Martombo ♦ 2.4k
0
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0
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1.3k
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C: ViennaPackage define output file name and location(RNAplfold)
3.8 years ago
Martombo ♦ 2.4k
0
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0
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1.7k
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C: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
4.0 years ago
Martombo ♦ 2.4k
2
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1
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1.7k
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A: Total RNA-Seq library prep - what do you do with the 'true' intronic reads? Woul
4.0 years ago
Martombo ♦ 2.4k
0
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0
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2.7k
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C: Summarizing Mirna-Seq Data Based On Ucsc Hg19 Alignment Results
4.1 years ago
Martombo ♦ 2.4k
2
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1
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973
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A: CLIP-Seq read density
4.1 years ago
Martombo ♦ 2.4k
1
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0
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1.0k
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C: intergenic reads in RNAseq
4.1 years ago
Martombo ♦ 2.4k
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