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Martombo ♦ 2.4k
Status: New
Handle: @Martombo3007
Reputation: 2420
Joined: 20 months ago
Last seen: 22 months ago
Location: Seville, ES

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0
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117
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Comment: C: Error in some hog codes using pyham
20 months ago
Martombo ♦ 2.4k
0
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1
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247
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Comment: C: Removing adaptors from smallRNA seq data
20 months ago
Martombo ♦ 2.4k
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1
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247
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Comment: C: Removing adaptors from smallRNA seq data
21 months ago
Martombo ♦ 2.4k
0
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1
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352
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Comment: C: Selecting the consensus/overlapped genes from the DE study
21 months ago
Martombo ♦ 2.4k
0
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1
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180
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Comment: C: Finding the best combination of covarites in a multivariate linear regression
21 months ago
Martombo ♦ 2.4k
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2.4k
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Comment: C: how to use ESTIMATE to infer tumor purity and stromal score from RNA-seq data?
21 months ago
Martombo ♦ 2.4k
1
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279
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Comment: C: Question about differentially expressed genes selection for low sample size data
22 months ago
Martombo ♦ 2.4k
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1
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276
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Comment: C: Differential analysis using cell-line data with replicate information
22 months ago
Martombo ♦ 2.4k
1
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127
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Answer: A: Co-expression analysis for genes coexpressed with gene X, genes X and Y, etc.
22 months ago
Martombo ♦ 2.4k
1
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423
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Comment: C: natural log used in Seurat for differential expression
2.1 years ago
Martombo ♦ 2.4k
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1
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688
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Comment: C: Read count difference between STAR and Bowtie
2.2 years ago
Martombo ♦ 2.4k
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1
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428
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Comment: C: STAR Splice Junctions normalization
2.2 years ago
Martombo ♦ 2.4k
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287
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Answer: A: RNA-binding motifs matching
2.3 years ago
Martombo ♦ 2.4k
1
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0
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236
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Answer: A: comparing two ratios in RNASeq data
2.3 years ago
Martombo ♦ 2.4k
2
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1
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718
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Comment: C: R read.table() saying line does not have correct number of elements - when I che
2.4 years ago
Martombo ♦ 2.4k
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0
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718
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Comment: C: R read.table() saying line does not have correct number of elements - when I che
2.4 years ago
Martombo ♦ 2.4k
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0
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337
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Answer: A: Quantifying repetitive elements in RNA-seqs
2.4 years ago
Martombo ♦ 2.4k
1
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1
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329
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Answer: C: DESEQ2 control vs multiple treatment
2.4 years ago
Martombo ♦ 2.4k
1
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1
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511
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Comment: C: Find out the mutation type from TCGA data
2.4 years ago
Martombo ♦ 2.4k
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247
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Comment: C: For Generating PPI
2.4 years ago
Martombo ♦ 2.4k
0
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1
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456
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Comment: C: Low mapping percentage with TopHat
2.4 years ago
Martombo ♦ 2.4k
4
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1
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556
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Comment: C: unable to count reads that are aligned to coding region
2.4 years ago
Martombo ♦ 2.4k
1
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0
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1.4k
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Comment: C: GSEA on single-cell cluster data
2.4 years ago
Martombo ♦ 2.4k
0
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0
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314
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Comment: C: RSEM tool installation error
2.4 years ago
Martombo ♦ 2.4k
2
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1
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532
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Comment: C: Advice on running a differential expression analysis on patients with slightly d
2.4 years ago
Martombo ♦ 2.4k
1
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1
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511
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Comment: C: Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
2.4 years ago
Martombo ♦ 2.4k
1
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1
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511
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Comment: C: Tophat2 or STAR for IsoformSwitchAnalyzeR analysis
2.4 years ago
Martombo ♦ 2.4k
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1
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568
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Comment: C: RNA-seq analysis of two species
2.4 years ago
Martombo ♦ 2.4k
1
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1
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739
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Comment: C: STAR index doesn't finish
2.5 years ago
Martombo ♦ 2.4k
0
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1
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458
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Comment: C: Performing differential expression study on isoforms
2.5 years ago
Martombo ♦ 2.4k
0
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1
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458
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Comment: C: Performing differential expression study on isoforms
2.5 years ago
Martombo ♦ 2.4k
1
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0
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424
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Answer: A: The tools to plot the saturation curve for RNA-Seq
2.5 years ago
Martombo ♦ 2.4k
1
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1
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352
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Comment: C: Selecting the consensus/overlapped genes from the DE study
2.5 years ago
Martombo ♦ 2.4k
1
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0
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744
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Comment: C: Is it possible to analyze differentially expressed genes without sample replicat
2.5 years ago
Martombo ♦ 2.4k
0
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0
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1.9k
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Comment: C: Biological variation within replicate groups, not much DE
5.0 years ago
Martombo ♦ 2.4k • updated 2.5 years ago
RamRS 21k
1
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296
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Comment: C: GO Enrichment for non model orlganisms
2.5 years ago
Martombo ♦ 2.4k
1
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0
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1.7k
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Comment: C: how to calculate the log FC for -1.5 fold change?
2.6 years ago
Martombo ♦ 2.4k
0
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1
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466
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Comment: C: How to run Py-script 300 times with 3 new variables and a new output-file each t
2.7 years ago
Martombo ♦ 2.4k
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0
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1.6k
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Comment: C: RNA-Seq counts for all genes?
2.7 years ago
Martombo ♦ 2.4k
3
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0
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372
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Comment: C: Bioinformatics project manager for NGS center
2.7 years ago
Martombo ♦ 2.4k
2
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2
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571
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Answer: C: Percentage of RNA-seq reads in exonic, intronic, intergenic and splice junction
2.7 years ago
Martombo ♦ 2.4k
0
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0
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289
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Answer: A: Mutation in one gene in TCGA data
2.8 years ago
Martombo ♦ 2.4k
0
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1
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1.1k
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Comment: C: Gene Co-expression analysis with less number of replicates
2.8 years ago
Martombo ♦ 2.4k
1
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0
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826
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Comment: C: Why DE genes are not among highly variable genes between groups
2.8 years ago
Martombo ♦ 2.4k
0
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0
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654
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Comment: C: Selection of hub gene on the basis of node degree
2.9 years ago
Martombo ♦ 2.4k
1
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1
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1.8k
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Comment: C: Normalization and differential analysis in ATAC-seq data
2.9 years ago
Martombo ♦ 2.4k
0
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0
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546
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Comment: C: project of MutsigCV/ MuSic
2.9 years ago
Martombo ♦ 2.4k
1
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1
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546
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Answer: A: project of MutsigCV/ MuSic
2.9 years ago
Martombo ♦ 2.4k
1
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1
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540
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Comment: C: pythonic equivalent to reduce() in R GRanges - how to collapse ranged data?
3.0 years ago
Martombo ♦ 2.4k
1
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1
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421
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Answer: A: Identifying enriched pathways that overlap among a range of databases
3.0 years ago
Martombo ♦ 2.4k
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