Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
387
views
Comment: Comment: To get p-values for the TPM
12 hours ago by dsull ★ 5.8k
1
vote
1
reply
387
views
Comment: Comment: To get p-values for the TPM
1 day ago by dsull ★ 5.8k
1
vote
2
replies
387
views
Answer: Answer: To get p-values for the TPM
1 day ago by dsull ★ 5.8k
0
votes
1
reply
407
views
Comment: Comment: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
1 day ago by dsull ★ 5.8k
2
votes
1
reply
407
views
Answer: Answer: Is it Acceptable to Have Uniform Quality Scores in a FASTQ File?
3 days ago by dsull ★ 5.8k
0
votes
0
replies
311
views
Answer: Answer: How to establish haplotype-specific gene expression levels
3 days ago by dsull ★ 5.8k
1
vote
0
replies
189
views
Comment: Comment: from row count to tpm
3 days ago by dsull ★ 5.8k
1
vote
0
replies
177
views
Comment: Comment: Help/Direction Needed for Data Analysis of RNA
9 days ago by dsull ★ 5.8k
1
vote
1
reply
509
views
Comment: Comment: STARsolo ; Reads are NOT mapped to transcriptome
15 days ago by dsull ★ 5.8k
1
vote
1
reply
509
views
Answer: Answer: STARsolo ; Reads are NOT mapped to transcriptome
15 days ago by dsull ★ 5.8k
0
votes
1
reply
311
views
Comment: Comment: How to to establish haplotype-specific gene expression levels
15 days ago by dsull ★ 5.8k
0
votes
0
replies
265
views
Comment: Comment: rRNA depletion of RIP-seq samples
16 days ago by dsull ★ 5.8k
1
vote
1
reply
202
views
Comment: Comment: In need of help with my RNA velocity trajectory inference pipeline!
17 days ago by dsull ★ 5.8k
1
vote
0
replies
259
views
Comment: Comment: Removing adapters in all the RNAseq samples regardless if they have or not, is i
21 days ago by dsull ★ 5.8k
0
votes
0
replies
464
views
Comment: Comment: Installing Cell Ranger
24 days ago by dsull ★ 5.8k
0
votes
0
replies
363
views
Comment: Comment: DESeq2 and normalization
27 days ago by dsull ★ 5.8k
0
votes
0
replies
523
views
Comment: Comment: STAR aligner options
28 days ago by dsull ★ 5.8k
1
vote
0
replies
822
views
Comment: Comment: Only one read per run - Trying to use CellRangerv7
28 days ago by dsull ★ 5.8k
0
votes
1
reply
523
views
Comment: Comment: STAR aligner options
29 days ago by dsull ★ 5.8k
1
vote
1
reply
363
views
Answer: Answer: DESeq2 and normalization
29 days ago by dsull ★ 5.8k
0
votes
0
replies
7.0k
views
Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by dsull ★ 5.8k
0
votes
1
reply
7.0k
views
Comment: Comment: Differences between SMART-seq2, SMART-seq3, and 10x
4 weeks ago by dsull ★ 5.8k
1
vote
1
reply
703
views
Comment: Comment: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.8k
1
vote
1
reply
703
views
Answer: Answer: cutadapt not trimming all adapters in PE Illumina sequencing
5 weeks ago by dsull ★ 5.8k
0
votes
0
replies
228
views
Comment: Comment: DEG (Differential expression gene) analysis
5 weeks ago by dsull ★ 5.8k
0
votes
1
reply
228
views
Answer: Answer: DEG (Differential expression gene) analysis
5 weeks ago by dsull ★ 5.8k
3
votes
1
reply
359
views
Comment: Comment: Average expression of a sample in single-cell data
5 weeks ago by dsull ★ 5.8k
1
vote
0
replies
378
views
Answer: Answer: scRNAseq normalization
5 weeks ago by dsull ★ 5.8k
0
votes
0
replies
155
views
Answer: Answer: STAR --sjdbGTFfile in alignment step
6 weeks ago by dsull ★ 5.8k
1
vote
0
replies
307
views
Comment: Comment: RNA-seq bam file normalization
7 weeks ago by dsull ★ 5.8k
1
vote
1
reply
284
views
Answer: Answer: scRNAseq output generated using STARsolo has gene_id rather than gene_name
7 weeks ago by dsull ★ 5.8k
2
votes
0
replies
355
views
Comment: Comment: How I should set `STAR` parameters to keep all the intronic reads?
8 weeks ago by dsull ★ 5.8k
4
votes
1
reply
355
views
Answer: Answer: How I should set `STAR` parameters to keep all the intronic reads?
8 weeks ago by dsull ★ 5.8k
1
vote
1
reply
607
views
Comment: Comment: Huge decrease of BUS records using bustools
8 weeks ago by dsull ★ 5.8k
0
votes
1
reply
260
views
Comment: Comment: Why does Phred+ encoding changes after trimming fastq files??
8 weeks ago by dsull ★ 5.8k
3
votes
0
replies
549
views
Answer: Answer: Would reaching out to local labs and startups help with my career transition?
8 weeks ago by dsull ★ 5.8k
0
votes
0
replies
575
views
Answer: Answer: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
updated 8 weeks ago by 43k • written 9 weeks ago by ★ 5.8k
0
votes
0
replies
575
views
Comment: Comment: Making PCA plot using variance instead of counts on Sleuth (plot_pca)
9 weeks ago by dsull ★ 5.8k
2
votes
0
replies
483
views
Comment: Comment: How does kallisto handle multi mapped reads?
9 weeks ago by dsull ★ 5.8k
0
votes
0
replies
250
views
Answer: Answer: Using tophat2 output for kallisto
9 weeks ago by dsull ★ 5.8k
0
votes
2
replies
483
views
Comment: Comment: How does kallisto handle multi mapped reads?
9 weeks ago by dsull ★ 5.8k
2
votes
1
reply
369
views
Answer: Answer: bulk seq vs. sc-seq
11 weeks ago by dsull ★ 5.8k
0
votes
1
reply
551
views
Comment: Comment: Differential expression analysis with very high duplication rate
11 weeks ago by dsull ★ 5.8k
0
votes
1
reply
551
views
Answer: Answer: Differential expression analysis with very high duplication rate
11 weeks ago by dsull ★ 5.8k
1
vote
0
replies
373
views
Answer: Answer: How to do DESeq2 on Kallisto Data
11 weeks ago by dsull ★ 5.8k
0
votes
1
reply
440
views
Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
11 weeks ago by dsull ★ 5.8k
1
vote
0
replies
440
views
Comment: Comment: How to exclude sex-dependent genes from RNASEQ?
11 weeks ago by dsull ★ 5.8k
1
vote
1
reply
584
views
Comment: Comment: Why employ normalization methods, and how can they be utilized in DEG analysis?
11 weeks ago by dsull ★ 5.8k
2
votes
1
reply
605
views
Comment: Comment: RNA seq, correlation, gene expression, STAR count
12 weeks ago by dsull ★ 5.8k
3
votes
1
reply
605
views
Answer: Answer: RNA seq, correlation, gene expression, STAR count
12 weeks ago by dsull ★ 5.8k
600 results • Page 1 of 12
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6