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Malcolm.Cook ♦ 1.0k
Status: New
Handle: @Malcolm.Cook266
Reputation: 1040
Joined: 20 months ago
Google Scholar: a6QLU7wAAAAJ
Last seen: 22 months ago
Location: kansas, usa

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1
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1.1k
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Answer: A: Identify reads that span intron-exon junctions in RNA-Seq
23 months ago
Malcolm.Cook ♦ 1.0k
0
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446
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Comment: C: 5', 3' SS and Intron retention read count using STAR out.tab
23 months ago
Malcolm.Cook ♦ 1.0k
1
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360
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Comment: C: How to extract filename and change text in the same file
23 months ago
Malcolm.Cook ♦ 1.0k
0
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360
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Comment: C: How to extract filename and change text in the same file
23 months ago
Malcolm.Cook ♦ 1.0k
3
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2
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360
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Answer: A: How to extract filename and change text in the same file
23 months ago
Malcolm.Cook ♦ 1.0k
2
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1
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370
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Answer: A: How to subset reads from fastq file to use as test file on a script
2.1 years ago
Malcolm.Cook ♦ 1.0k
2
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0
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281
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Answer: A: Is there a standard file format for anchored contigs?
2.2 years ago
Malcolm.Cook ♦ 1.0k
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435
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Comment: C: Automating to convert multiple fastq files into one fastq file
2.2 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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435
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Comment: C: Automating to convert multiple fastq files into one fastq file
2.2 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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435
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Comment: C: Automating to convert multiple fastq files into one fastq file
2.3 years ago
Malcolm.Cook ♦ 1.0k
2
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1
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435
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Answer: A: Automating to convert multiple fastq files into one fastq file
2.3 years ago
Malcolm.Cook ♦ 1.0k
3
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2
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386
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Answer: A: How can keep the change in my fastq file when i use grep and sed to edit it?
2.3 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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386
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Comment: C: How can keep the change in my fastq file when i use grep and sed to edit it?
2.3 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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620
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Answer: A: gene set enrichment analysis
2.4 years ago
Malcolm.Cook ♦ 1.0k
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2
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593
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Comment: C: How can I easily remove overlapping transcripts, keeping only longest transcript
2.4 years ago
Malcolm.Cook ♦ 1.0k
1
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593
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Comment: C: How can I easily remove overlapping transcripts, keeping only longest transcript
2.4 years ago
Malcolm.Cook ♦ 1.0k
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0
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593
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Comment: C: How can I easily remove overlapping transcripts, keeping only longest transcript
2.4 years ago
Malcolm.Cook ♦ 1.0k
2
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1
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593
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Answer: A: How can I easily remove overlapping transcripts, keeping only longest transcript
2.4 years ago
Malcolm.Cook ♦ 1.0k
1
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0
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509
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Answer: A: grep whole sequences containing a specific motif in a fasta file
2.4 years ago
Malcolm.Cook ♦ 1.0k
1
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0
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763
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Answer: A: How to design qPCR primers to validate RNA-seq experiment?
2.4 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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763
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Comment: C: How to design qPCR primers to validate RNA-seq experiment?
2.5 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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571
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Comment: C: Normal to have high variability in Broad Institute's GSEA Output?
2.5 years ago
Malcolm.Cook ♦ 1.0k
5
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5
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3.9k
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Answer: A: Quick Programming Challenge: How Do I Calculate Reference Coverage From A Table
10.9 years ago
Malcolm.Cook ♦ 1.0k • updated 2.5 years ago
RamRS 21k
1
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Answer: A: How To Convert Blast Results To Gff
5.2 years ago
Malcolm.Cook ♦ 1.0k • updated 2.5 years ago
RamRS 21k
0
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906
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Answer: A: meme-chip command line usage error
3.2 years ago
Malcolm.Cook ♦ 1.0k
0
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0
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666
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Answer: A: How to overlap the coverage profiles of read-mapping in IGV or other mapping res
3.3 years ago
Malcolm.Cook ♦ 1.0k
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678
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Comment: C: Question about mapping motif binding sites to genome location
3.3 years ago
Malcolm.Cook ♦ 1.0k
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0
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604
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Comment: C: Recreating a Genomic reference (.fastq) from a BCF file
3.3 years ago
Malcolm.Cook ♦ 1.0k
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550
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Answer: A: how to parse raw reads to unique reads with count for fast alignment
3.3 years ago
Malcolm.Cook ♦ 1.0k
1
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600
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Answer: A: visualization of identified SSRs
3.3 years ago
Malcolm.Cook ♦ 1.0k
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0
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716
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Answer: A: looking for alignment in IGV
3.3 years ago
Malcolm.Cook ♦ 1.0k
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1.1k
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Comment: C: Intron size from gtf/gff file ?
3.3 years ago
Malcolm.Cook ♦ 1.0k
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1.2k
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Comment: C: Average intron length in Drosophila melagnoster
3.3 years ago
Malcolm.Cook ♦ 1.0k
1
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1.5k
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Answer: A: Tool to generate a chain file from an agp file
3.3 years ago
Malcolm.Cook ♦ 1.0k
1
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1
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1.4k
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Answer: A: Where are .motif files from homer knownResults?
3.3 years ago
Malcolm.Cook ♦ 1.0k
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1.0k
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Comment: C: Future direction of Gene Set Enrichment Analysis
3.5 years ago
Malcolm.Cook ♦ 1.0k
0
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570
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Comment: C: all samples in 0 cluster
3.5 years ago
Malcolm.Cook ♦ 1.0k
4
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1
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1.2k
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Answer: A: Average intron length in Drosophila melagnoster
3.5 years ago
Malcolm.Cook ♦ 1.0k
0
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2.5k
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Comment: C: Trying to modify new Repbase .embls to work as RepeatMasker .embl
3.6 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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1.6k
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Answer: A: Merge two bigwig(+/- strand) files from RNA-seq
3.7 years ago
Malcolm.Cook ♦ 1.0k
0
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0
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1.3k
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Comment: C: MISO: Extraction of splicing events from user specified gene annotation (gtf or
3.7 years ago
Malcolm.Cook ♦ 1.0k
0
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757
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Comment: C: define alternative splice sites
3.7 years ago
Malcolm.Cook ♦ 1.0k
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1
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757
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Comment: C: define alternative splice sites
3.7 years ago
Malcolm.Cook ♦ 1.0k
0
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509
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Comment: C: Trying to use the gff_to_gtf utiilty in genomeTools
3.7 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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757
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Answer: A: define alternative splice sites
3.8 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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1.3k
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Comment: C: Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
3.8 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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1.3k
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Answer: A: Differential Expression of Splice Junctions using voom-limma/voom-diffSplice
3.8 years ago
Malcolm.Cook ♦ 1.0k
0
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0
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957
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Comment: C: Cuffdiff promoter.diff is empty
3.9 years ago
Malcolm.Cook ♦ 1.0k
0
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1
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2.0k
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Comment: C: cuffdiff vs cuffnorm vs cuffquant
3.9 years ago
Malcolm.Cook ♦ 1.0k
0
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0
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782
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Answer: A: problem in running vcf-consensus command
4.0 years ago
Malcolm.Cook ♦ 1.0k
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