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1
vote
4
replies
5.0k
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C to T Transition Mechanism
sequencing genome
updated 3.7 years ago by 20 • written 7.7 years ago by ▴ 120
6
votes
9
replies
12k
views
Converting Illumina fastq quality scores to phred
sequencing
updated 4.2 years ago by ▴ 120 • written 7.4 years ago by ▴ 120
0
votes
0
replies
901
views
Comment: C: dNdScv Zero coding substitutions found in this dataset.
4.4 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
901
views
Comment: C: dNdScv Zero coding substitutions found in this dataset.
4.4 years ago by L. A. Liggett ▴ 120
0
votes
3
replies
901
views
dNdScv Zero coding substitutions found in this dataset.
software error
updated 4.4 years ago by ▴ 220 • written 4.4 years ago by ▴ 120
0
votes
1
reply
1.5k
views
Comment: C: Convert mouse amino acid location to genomic location
4.8 years ago by L. A. Liggett ▴ 120
0
votes
1
reply
1.5k
views
Comment: C: Convert mouse amino acid location to genomic location
4.8 years ago by L. A. Liggett ▴ 120
9
votes
9
replies
1.5k
views
Convert mouse amino acid location to genomic location
genome gene
4.8 years ago by L. A. Liggett ▴ 120
0
votes
1
reply
1.5k
views
Comment: C: Convert mouse amino acid location to genomic location
4.8 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
600
views
Separate Genome into Tiers
genome
5.5 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
1.4k
views
Comment: C: How to get orthologous sequence
5.5 years ago by L. A. Liggett ▴ 120
1
vote
7
replies
1.4k
views
How to get orthologous sequence
genome gene
updated 5.5 years ago by 15k • written 5.6 years ago by ▴ 120
0
votes
0
replies
1.4k
views
Comment: C: How to get orthologous sequence
5.6 years ago by L. A. Liggett ▴ 120
0
votes
1
reply
1.4k
views
Comment: C: How to get orthologous sequence
5.6 years ago by L. A. Liggett ▴ 120
7
votes
4
replies
5.9k
views
Get gene names from ensembl ID or gene region
RNA-Seq Ensembl Python
updated 5.6 years ago by 35k • written 5.6 years ago by ▴ 120
1
vote
7
replies
1.4k
views
Label fastq reads
alignment sequencing
updated 5.9 years ago by 14k • written 5.9 years ago by ▴ 120
0
votes
1
reply
1.4k
views
Comment: C: Label fastq reads
5.9 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
1.4k
views
Comment: C: Label fastq reads
5.9 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
2.1k
views
Comment: C: Samtools faidx non-zero exit status 217
5.9 years ago by L. A. Liggett ▴ 120
2
votes
3
replies
2.1k
views
Samtools faidx non-zero exit status 217
sequence
5.9 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
1.3k
views
Comment: C: Determining off-target oligo binding potential
6.1 years ago by L. A. Liggett ▴ 120
0
votes
4
replies
1.3k
views
Determining off-target oligo binding potential
sequence genome sequencing
6.1 years ago by L. A. Liggett ▴ 120
4
votes
1
reply
4.7k
views
primer3-py Heterodimer Calculations
sequencing sequence
updated 6.1 years ago by ▴ 740 • written 6.1 years ago by ▴ 120
1
vote
3
replies
2.3k
views
Use vcf files for dN/dS calculations
sequencing
updated 6 months ago by ▴ 840 • written 6.3 years ago by ▴ 120
0
votes
0
replies
1.6k
views
Comment: C: Finding a variant's flanking sequence
6.4 years ago by L. A. Liggett ▴ 120
0
votes
1
reply
1.6k
views
Comment: C: Finding a variant's flanking sequence
6.4 years ago by L. A. Liggett ▴ 120
4
votes
4
replies
1.6k
views
Finding a variant's flanking sequence
sequence sequencing
updated 6.4 years ago by 22k • written 6.4 years ago by ▴ 120
0
votes
4
replies
2.2k
views
Derive Consensus Read from pairwise2 alignment
alignment
updated 6.7 years ago by ▴ 320 • written 7.1 years ago by ▴ 120
0
votes
1
reply
1.8k
views
Comment: C: Lack of early variants
6.8 years ago by L. A. Liggett ▴ 120
2
votes
10
replies
1.8k
views
Lack of early variants
sequencing
updated 6.8 years ago by ★ 4.9k • written 6.8 years ago by ▴ 120
0
votes
1
reply
1.8k
views
Comment: C: Lack of early variants
6.8 years ago by L. A. Liggett ▴ 120
0
votes
1
reply
1.8k
views
Comment: C: Lack of early variants
6.8 years ago by L. A. Liggett ▴ 120
1
vote
0
replies
1.8k
views
Comment: C: Lack of early variants
6.8 years ago by L. A. Liggett ▴ 120
3
votes
2
replies
1.7k
views
Reverse Complement Human Genome Reference
sequencing
6.8 years ago by L. A. Liggett ▴ 120
1
vote
0
replies
1.9k
views
Freebayes is slow and maybe inaccurate when processing a single aligned read
sequencing variant calling
6.9 years ago by L. A. Liggett ▴ 120
2
votes
0
replies
1.6k
views
Creating test vcf files
sequencing
7.0 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
1.7k
views
Comment: C: Method of Checking for Mutation Patterns
7.0 years ago by L. A. Liggett ▴ 120
2
votes
4
replies
1.7k
views
Method of Checking for Mutation Patterns
sequencing
updated 7.0 years ago by ▴ 180 • written 7.0 years ago by ▴ 120
0
votes
0
replies
1.7k
views
Comment: C: Method of Checking for Mutation Patterns
7.0 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
2.2k
views
Comment: C: Derive Consensus Read from pairwise2 alignment
7.1 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
2.3k
views
Comment: C: PCR Amplification necessity in RNASeq
7.2 years ago by L. A. Liggett ▴ 120
2
votes
4
replies
2.3k
views
PCR Amplification necessity in RNASeq
RNA-Seq
7.2 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
1.7k
views
Comment: C: What causes measured sequencing depth variation
7.2 years ago by L. A. Liggett ▴ 120
0
votes
2
replies
1.7k
views
What causes measured sequencing depth variation
next-gen
7.2 years ago by L. A. Liggett ▴ 120
1
vote
1
reply
2.2k
views
Accounting for off-target reads
alignment sequencing
updated 7.3 years ago by ★ 4.9k • written 7.3 years ago by ▴ 120
3
votes
1
reply
12k
views
Answer: A: Converting Illumina fastq quality scores to phred
7.4 years ago by L. A. Liggett ▴ 120
0
votes
0
replies
1.6k
views
Answer: A: Genome-Wide Sequencing Depth of Coverage Relationship to Genomic Regional Variat
7.4 years ago by L. A. Liggett ▴ 120
0
votes
1
reply
1.6k
views
Comment: C: purify tumor samples and remove normal cells
7.4 years ago by L. A. Liggett ▴ 120
1
vote
1
reply
2.0k
views
Comment: C: Minor allele frequency
7.4 years ago by L. A. Liggett ▴ 120
0
votes
1
reply
12k
views
Comment: C: Converting Illumina fastq quality scores to phred
7.4 years ago by L. A. Liggett ▴ 120
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