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125
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Forum: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
visualization ChIP-Seq homer ngsplot deeptools
updated 12 months ago by 43k • written 8.1 years ago by ★ 3.2k
1
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1
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6.3k
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Comment: C: stringtie cannot recognize Gencode GTF
6.3 years ago by Sinji ★ 3.2k
2
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0
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2.4k
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Comment: C: bedops -u does not work properly
6.3 years ago by Sinji ★ 3.2k
0
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1
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2.4k
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Comment: C: bedops -u does not work properly
6.3 years ago by Sinji ★ 3.2k
0
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1
reply
2.4k
views
Comment: C: bedops -u does not work properly
6.3 years ago by Sinji ★ 3.2k
0
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0
replies
1.5k
views
Answer: A: Detect LINE1 element in NGS data
6.3 years ago by Sinji ★ 3.2k
0
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0
replies
1.7k
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Comment: C: How to extract variable nucleotide regions from a list of contigs
6.3 years ago by Sinji ★ 3.2k
1
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1
reply
2.2k
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Comment: C: nextflow implementation of grape pipeline
6.4 years ago by Sinji ★ 3.2k
1
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2
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4.5k
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Comment: C: How Gro-seq identify enhancer RNA?
6.4 years ago by Sinji ★ 3.2k
3
votes
6
replies
8.7k
views
Trim galore terminates with exit signal: '256'
trim_galore cutadapt
updated 6.4 years ago by ▴ 570 • written 7.9 years ago by ★ 3.2k
6
votes
6
replies
6.5k
views
ChromHMM Output Descriptions
ChromHMM
updated 6.4 years ago by ▴ 90 • written 7.7 years ago by ★ 3.2k
1
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1
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8.3k
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Comment: C: How to plot ChIP-seq Density vs Distance from TSS using Homer annoted files
6.4 years ago by Sinji ★ 3.2k
0
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0
replies
5.8k
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Comment: C: Identifying the orientation of a CTCF motif?
6.5 years ago by Sinji ★ 3.2k
5
votes
7
replies
5.8k
views
Identifying the orientation of a CTCF motif?
CTCF ChIP-Seq
updated 6.5 years ago by ▴ 270 • written 6.5 years ago by ★ 3.2k
1
vote
0
replies
50k
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Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
6.8 years ago by Sinji ★ 3.2k
7
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3
replies
43k
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Answer: A: Snakemake vs. Nextflow: strengths and weaknesses
6.8 years ago by Sinji ★ 3.2k
2
votes
0
replies
3.9k
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Comment: C: Chip-seq peak annotation [Chipseeker]
6.8 years ago by Sinji ★ 3.2k
1
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1
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4.8k
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Comment: C: STAR installation make error
6.9 years ago by Sinji ★ 3.2k
1
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0
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1.1k
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Answer: A: Peak ident near highly expressed genes
6.9 years ago by Sinji ★ 3.2k
0
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0
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4.3k
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Answer: A: chip-seq analysis and peak annotation
6.9 years ago by Sinji ★ 3.2k
3
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1
reply
5.8k
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Comment: C: Is annotation of enhancers to nearest gene pointless?
6.9 years ago by Sinji ★ 3.2k
6
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1
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5.8k
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Answer: A: Is annotation of enhancers to nearest gene pointless?
6.9 years ago by Sinji ★ 3.2k
0
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0
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3.3k
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Comment: C: BBMap: Number of reads out does not add up to number of reads in
6.9 years ago by Sinji ★ 3.2k
1
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0
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3.3k
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Comment: C: BBMap: Number of reads out does not add up to number of reads in
6.9 years ago by Sinji ★ 3.2k
1
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4
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3.3k
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BBMap: Number of reads out does not add up to number of reads in
bbmap
6.9 years ago by Sinji ★ 3.2k
1
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0
replies
5.5k
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Answer: A: Where can I download Human genome 38 as reference genome in RNA-seq?
6.9 years ago by Sinji ★ 3.2k
0
votes
0
replies
3.9k
views
Comment: C: error in macs2 usage
7.0 years ago by Sinji ★ 3.2k
0
votes
1
reply
1.7k
views
Comment: C: EP300 ChIP-seq in the brain
7.0 years ago by Sinji ★ 3.2k
0
votes
1
reply
1.8k
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Comment: C: Long Motif Predicted by MEME SUITE
7.0 years ago by Sinji ★ 3.2k
1
vote
1
reply
1.8k
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Comment: C: Long Motif Predicted by MEME SUITE
7.0 years ago by Sinji ★ 3.2k
1
vote
0
replies
2.5k
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Answer: A: Does BBMap not include headers in BAM files?
7.0 years ago by Sinji ★ 3.2k
3
votes
7
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2.5k
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Does BBMap not include headers in BAM files?
bbmap
7.0 years ago by Sinji ★ 3.2k
0
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0
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2.5k
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Comment: C: Does BBMap not include headers in BAM files?
7.0 years ago by Sinji ★ 3.2k
0
votes
0
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2.5k
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Comment: C: Does BBMap not include headers in BAM files?
7.0 years ago by Sinji ★ 3.2k
0
votes
1
reply
2.5k
views
Comment: C: Does BBMap not include headers in BAM files?
7.0 years ago by Sinji ★ 3.2k
0
votes
1
reply
2.7k
views
Comment: C: bedtools_intersect files sorting problem
7.0 years ago by Sinji ★ 3.2k
0
votes
1
reply
2.7k
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Comment: C: bedtools_intersect files sorting problem
7.0 years ago by Sinji ★ 3.2k
1
vote
1
reply
3.7k
views
Comment: C: convert2bed issue with large input file?
7.0 years ago by Sinji ★ 3.2k
0
votes
1
reply
3.1k
views
Comment: C: Genomic overlap using ChIPseeker enrichPeakOverlap
7.0 years ago by Sinji ★ 3.2k
1
vote
1
reply
3.1k
views
Answer: A: compare peaks in a gene list (coordinates)
7.0 years ago by Sinji ★ 3.2k
1
vote
1
reply
1.9k
views
Comment: C: Pipeline for detecting (TF) Chip-seq peaks in transposable elements?
7.1 years ago by Sinji ★ 3.2k
0
votes
0
replies
3.1k
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Comment: C: how to filter ChIP-Seq peaks called by MACS based on the measurements?
7.1 years ago by Sinji ★ 3.2k
0
votes
0
replies
50k
views
Comment: C: Visualization of ChIP-seq data using Heatmaps (Updated: 06/10/16)
7.1 years ago by Sinji ★ 3.2k
0
votes
0
replies
3.5k
views
Comment: C: STAR output processing
7.2 years ago by Sinji ★ 3.2k
2
votes
1
reply
1.9k
views
Comment: C: How to split a bed file according promoter window (-30 to 300bp)
7.2 years ago by Sinji ★ 3.2k
1
vote
1
reply
1.9k
views
Comment: C: How to split a bed file according promoter window (-30 to 300bp)
7.2 years ago by Sinji ★ 3.2k
0
votes
0
replies
9.4k
views
Comment: C: How to annotate TTS or TES
7.2 years ago by Sinji ★ 3.2k
0
votes
0
replies
3.3k
views
Comment: C: Homer findMotifsGenome.pl error
7.2 years ago by Sinji ★ 3.2k
1
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1
reply
9.4k
views
Comment: C: How to annotate TTS or TES
7.2 years ago by Sinji ★ 3.2k
0
votes
1
reply
9.4k
views
Comment: C: How to annotate TTS or TES
7.2 years ago by Sinji ★ 3.2k
197 results • Page 1 of 4
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