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jomo018 • 480
Status: New
Handle: @jomo01823839
Reputation: 480
Email: j*********@gmail.com
Joined: 13 months ago
Last seen: 14 months ago
Location:

Posts Awards
5
Votes
31
Replies
1.4k
Views
De-duplicate UMI at FASTQ level
UMI fastq
21 months ago
jomo018 • 480 • updated 18 months ago
Rituriya • 20
0
Votes
0
Replies
517
Views
C: FASTQ alignment result is really bad
19 months ago
jomo018 • 480
1
Vote
0
Replies
611
Views
C: log vs square-root transformation
20 months ago
jomo018 • 480
0
Votes
0
Replies
426
Views
C: salmon - tximport - deseq2 gene level workflow
20 months ago
jomo018 • 480
0
Votes
2
Replies
426
Views
salmon - tximport - deseq2 gene level workflow
RNA-Seq salmon deseq2 tximport
20 months ago
jomo018 • 480
1
Vote
0
Replies
521
Views
A: How to extract unique values between columns in R ?
20 months ago
jomo018 • 480
0
Votes
0
Replies
582
Views
C: Mouse Enhancers Database/ Mouse Enhancer annotation
20 months ago
jomo018 • 480
0
Votes
0
Replies
582
Views
A: Mouse Enhancers Database/ Mouse Enhancer annotation
20 months ago
jomo018 • 480
0
Votes
3
Replies
2.5k
Views
C: TypeError: 'str' object is not callable
21 months ago
jomo018 • 480 • updated 21 months ago
RamRS 21k
0
Votes
0
Replies
599
Views
C: Error using bedtools "intersect" command
21 months ago
jomo018 • 480
1
Vote
1
Reply
599
Views
C: Error using bedtools "intersect" command
21 months ago
jomo018 • 480
0
Votes
1
Reply
780
Views
A: Salmon (error: SAM file and fasta file have different transcript length)
21 months ago
jomo018 • 480
1
Vote
0
Replies
425
Views
C: Salmon error message
21 months ago
jomo018 • 480
3
Votes
0
Replies
2.4k
Views
A: Fold change - a final explanation
21 months ago
jomo018 • 480
2
Votes
0
Replies
894
Views
A: giving a color to null values on heatmap2
21 months ago
jomo018 • 480
1
Vote
1
Reply
606
Views
C: Illegal Division by zero
22 months ago
jomo018 • 480
1
Vote
1
Reply
606
Views
C: Illegal Division by zero
22 months ago
jomo018 • 480
0
Votes
1
Reply
901
Views
C: How to append the cell barcode and UMI information to the fastq header in paired
22 months ago
jomo018 • 480
0
Votes
1
Reply
416
Views
C: De-multiplex of no illumina index RNAseq libraries on Novaseq
22 months ago
jomo018 • 480
1
Vote
0
Replies
591
Views
A: Extract start coordinate from read 1 and end coordinate from read 2 of paired en
22 months ago
jomo018 • 480
0
Votes
1
Reply
332
Views
C: Which DE genes should be included in pathway search
23 months ago
jomo018 • 480
0
Votes
1
Reply
332
Views
C: Which DE genes should be included in pathway search
23 months ago
jomo018 • 480
0
Votes
1
Reply
332
Views
C: Which DE genes should be included in pathway search
23 months ago
jomo018 • 480
2
Votes
8
Replies
332
Views
Which DE genes should be included in pathway search
RNA-Seq DE pathway
23 months ago
jomo018 • 480 • updated 23 months ago
grant.hovhannisyan ♦ 1.5k
2
Votes
1
Reply
896
Views
Enrichr negative z-score meaning
pathways z-score Enrichr
23 months ago
jomo018 • 480 • updated 23 months ago
Kevin Blighe 43k
2
Votes
1
Reply
502
Views
Information required for Human lncRNA array V6.0, 4 X 180 K, Agilent, ID: 74348
lncRNA micro array Agilent
2.2 years ago
jomo018 • 480 • updated 2.2 years ago
genomax 68k
1
Vote
0
Replies
702
Views
A: Pearson correlation between chIP-seq replicates is very poor- am I doing somethi
2.2 years ago
jomo018 • 480
0
Votes
1
Reply
782
Views
A: Building bioinformatics tools in Ubuntu 17.10
2.3 years ago
jomo018 • 480
0
Votes
1
Reply
943
Views
C: Why does read quality drop after adapter trimming with cutadapt?
2.3 years ago
jomo018 • 480
2
Votes
1
Reply
650
Views
A: A doubt about the clinical information of hepatocellular carcinoma in TCGA
2.3 years ago
jomo018 • 480
2
Votes
2
Replies
452
Views
C: Why names() returns empty?
2.4 years ago
jomo018 • 480
0
Votes
1
Reply
749
Views
C: bedtools fisher interpretation of "in -a" "not in -b"
2.4 years ago
jomo018 • 480
0
Votes
1
Reply
749
Views
C: bedtools fisher interpretation of "in -a" "not in -b"
2.4 years ago
jomo018 • 480
0
Votes
1
Reply
749
Views
C: bedtools fisher interpretation of "in -a" "not in -b"
2.4 years ago
jomo018 • 480
0
Votes
1
Reply
749
Views
C: bedtools fisher interpretation of "in -a" "not in -b"
2.4 years ago
jomo018 • 480
0
Votes
9
Replies
749
Views
bedtools fisher interpretation of "in -a" "not in -b"
intersection bedtools fisher
2.4 years ago
jomo018 • 480
1
Vote
0
Replies
549
Views
A: How to proceed from these methylation .txt files?
2.4 years ago
jomo018 • 480
1
Vote
1
Reply
556
Views
A: For cancer classification, can I use normal tissue sample of patients?
2.4 years ago
jomo018 • 480
0
Votes
1
Reply
489
Views
A: How determine to read specific size from file using R language
2.4 years ago
jomo018 • 480
1
Vote
1
Reply
887
Views
C: fastq parsing inefficiencies with python
2.4 years ago
jomo018 • 480
2
Votes
0
Replies
887
Views
C: fastq parsing inefficiencies with python
2.4 years ago
jomo018 • 480
0
Votes
0
Replies
516
Views
C: split seq in fasta file in groups according to seq similarity?
2.4 years ago
jomo018 • 480
0
Votes
0
Replies
400
Views
C: What is special in a BED file
2.5 years ago
jomo018 • 480
1
Vote
3
Replies
400
Views
What is special in a BED file
next-gen sequencing pipeline
2.5 years ago
jomo018 • 480
2
Votes
1
Reply
581
Views
A: Technical question about python "to find the strings"
2.5 years ago
jomo018 • 480
0
Votes
1
Reply
1.7k
Views
C: Problem with methylKit and Bismark
2.5 years ago
jomo018 • 480
0
Votes
0
Replies
794
Views
C: vcf2bed giving empty bed file as output
2.5 years ago
jomo018 • 480
1
Vote
0
Replies
920
Views
A: Please clarify me about countOverlaps()?
2.5 years ago
jomo018 • 480
3
Votes
1
Reply
9.0k
Views
A: How to remove the empty line in using python
2.5 years ago
jomo018 • 480
0
Votes
0
Replies
920
Views
A: problem in fastq-dump of SRA file
2.5 years ago
jomo018 • 480
3
Votes
0
Replies
1.7k
Views
A: Problem with methylKit and Bismark
2.6 years ago
jomo018 • 480
0
Votes
0
Replies
924
Views
C: Converting TCGA Bam files to fastq: Picard does not work!
3.0 years ago
jomo018 • 480
0
Votes
1
Reply
924
Views
C: Converting TCGA Bam files to fastq: Picard does not work!
3.0 years ago
jomo018 • 480
4
Votes
1
Reply
1.4k
Views
C: Why not merging?
3.0 years ago
jomo018 • 480
2
Votes
0
Replies
1.4k
Views
A: Why not merging?
3.0 years ago
jomo018 • 480
0
Votes
1
Reply
547
Views
C: spliced alignment algorithm
3.0 years ago
jomo018 • 480
2
Votes
3
Replies
547
Views
spliced alignment algorithm
rna-seq alignment splice
3.0 years ago
jomo018 • 480
0
Votes
1
Reply
919
Views
C: Pair end merging and statistical output
3.2 years ago
jomo018 • 480
0
Votes
1
Reply
1.2k
Views
C: HISAT2 (v2.0.0-beta) MAPQ query for allele specific expression analysis
3.2 years ago
jomo018 • 480
0
Votes
1
Reply
919
Views
C: Pair end merging and statistical output
3.2 years ago
jomo018 • 480
0
Votes
1
Reply
919
Views
C: Pair end merging and statistical output
3.2 years ago
jomo018 • 480
2
Votes
12
Replies
919
Views
Pair end merging and statistical output
paired ends alignment overlap
3.2 years ago
jomo018 • 480 • updated 3.2 years ago
Brian Bushnell 16k
0
Votes
0
Replies
919
Views
C: Pair end merging and statistical output
3.2 years ago
jomo018 • 480
0
Votes
1
Reply
919
Views
C: Pair end merging and statistical output
3.2 years ago
jomo018 • 480
2
Votes
1
Reply
1.7k
Views
A: BWA MAPQ qualities 0 for primary alignments and discordant reads
3.3 years ago
jomo018 • 480
3
Votes
1
Reply
3.9k
Views
A: Illumina paired-end reads R1 and R2 mixed together?
3.3 years ago
jomo018 • 480
0
Votes
1
Reply
1.2k
Views
C: fastq reads with primers and truseq indexed adapter
3.3 years ago
jomo018 • 480
0
Votes
1
Reply
1.2k
Views
C: fastq reads with primers and truseq indexed adapter
3.3 years ago
jomo018 • 480
0
Votes
1
Reply
1.2k
Views
C: fastq reads with primers and truseq indexed adapter
3.3 years ago
jomo018 • 480
0
Votes
1
Reply
1.2k
Views
C: fastq reads with primers and truseq indexed adapter
3.3 years ago
jomo018 • 480 • updated 3.3 years ago
genomax 68k
0
Votes
1
Reply
1.2k
Views
C: fastq reads with primers and truseq indexed adapter
3.3 years ago
jomo018 • 480
0
Votes
1
Reply
1.2k
Views
C: fastq reads with primers and truseq indexed adapter
3.3 years ago
jomo018 • 480
0
Votes
1
Reply
1.2k
Views
C: fastq reads with primers and truseq indexed adapter
3.3 years ago
jomo018 • 480
3
Votes
15
Replies
1.2k
Views
fastq reads with primers and truseq indexed adapter
sequencing next-gen sequence
3.3 years ago
jomo018 • 480
0
Votes
0
Replies
1.2k
Views
A: Mapping target bisulfite sequencing reads to a reference
4.4 years ago
jomo018 • 480
1
Vote
1
Reply
4.7k
Views
A: paired end illumina reads
4.4 years ago
jomo018 • 480
0
Votes
0
Replies
810
Views
C: SpiliceMap processing time
4.4 years ago
jomo018 • 480
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