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jomo018 • 480
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Handle: @jomo01823839
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Last seen: 22 months ago
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5
Votes
31
Replies
1.4k
Views
6 follow
De-duplicate UMI at FASTQ level
UMI fastq
2.3 years ago
jomo018 • 480 • updated 2.1 years ago
Rituriya • 20
0
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0
Replies
525
Views
Comment: C: FASTQ alignment result is really bad
2.2 years ago
jomo018 • 480
1
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0
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616
Views
Comment: C: log vs square-root transformation
2.3 years ago
jomo018 • 480
0
Votes
0
Replies
430
Views
Comment: C: salmon - tximport - deseq2 gene level workflow
2.3 years ago
jomo018 • 480
0
Votes
2
Replies
430
Views
salmon - tximport - deseq2 gene level workflow
RNA-Seq salmon deseq2 tximport
2.3 years ago
jomo018 • 480
1
Vote
0
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525
Views
Answer: A: How to extract unique values between columns in R ?
2.3 years ago
jomo018 • 480
0
Votes
0
Replies
582
Views
Comment: C: Mouse Enhancers Database/ Mouse Enhancer annotation
2.3 years ago
jomo018 • 480
0
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0
Replies
582
Views
Answer: A: Mouse Enhancers Database/ Mouse Enhancer annotation
2.3 years ago
jomo018 • 480
0
Votes
3
Replies
2.5k
Views
Answer: C: TypeError: 'str' object is not callable
2.4 years ago
jomo018 • 480 • updated 2.4 years ago
RamRS 21k
0
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0
Replies
601
Views
Comment: C: Error using bedtools "intersect" command
2.4 years ago
jomo018 • 480
1
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1
Reply
601
Views
Comment: C: Error using bedtools "intersect" command
2.4 years ago
jomo018 • 480
0
Votes
1
Reply
782
Views
Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
2.4 years ago
jomo018 • 480
1
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0
Replies
428
Views
Comment: C: Salmon error message
2.4 years ago
jomo018 • 480
3
Votes
0
Replies
2.4k
Views
Answer: A: Fold change - a final explanation
2.4 years ago
jomo018 • 480
2
Votes
0
Replies
895
Views
Answer: A: giving a color to null values on heatmap2
2.4 years ago
jomo018 • 480
1
Vote
1
Reply
607
Views
Comment: C: Illegal Division by zero
2.4 years ago
jomo018 • 480
1
Vote
1
Reply
607
Views
Comment: C: Illegal Division by zero
2.4 years ago
jomo018 • 480
0
Votes
1
Reply
903
Views
Comment: C: How to append the cell barcode and UMI information to the fastq header in paired
2.5 years ago
jomo018 • 480
0
Votes
1
Reply
419
Views
Comment: C: De-multiplex of no illumina index RNAseq libraries on Novaseq
2.5 years ago
jomo018 • 480
1
Vote
0
Replies
601
Views
Answer: A: Extract start coordinate from read 1 and end coordinate from read 2 of paired en
2.5 years ago
jomo018 • 480
0
Votes
1
Reply
341
Views
Comment: C: Which DE genes should be included in pathway search
2.5 years ago
jomo018 • 480
0
Votes
1
Reply
341
Views
Comment: C: Which DE genes should be included in pathway search
2.5 years ago
jomo018 • 480
0
Votes
1
Reply
341
Views
Comment: C: Which DE genes should be included in pathway search
2.5 years ago
jomo018 • 480
2
Votes
8
Replies
341
Views
Which DE genes should be included in pathway search
RNA-Seq DE pathway
2.5 years ago
jomo018 • 480 • updated 2.5 years ago
grant.hovhannisyan ♦ 1.5k
2
Votes
1
Reply
898
Views
Enrichr negative z-score meaning
pathways z-score Enrichr
2.6 years ago
jomo018 • 480 • updated 2.6 years ago
Kevin Blighe 43k
2
Votes
1
Reply
505
Views
Information required for Human lncRNA array V6.0, 4 X 180 K, Agilent, ID: 74348
lncRNA micro array Agilent
2.8 years ago
jomo018 • 480 • updated 2.8 years ago
genomax 68k
1
Vote
0
Replies
706
Views
Answer: A: Pearson correlation between chIP-seq replicates is very poor- am I doing somethi
2.8 years ago
jomo018 • 480
0
Votes
1
Reply
788
Views
Answer: A: Building bioinformatics tools in Ubuntu 17.10
2.9 years ago
jomo018 • 480
0
Votes
1
Reply
944
Views
Comment: C: Why does read quality drop after adapter trimming with cutadapt?
2.9 years ago
jomo018 • 480
2
Votes
1
Reply
653
Views
Answer: A: A doubt about the clinical information of hepatocellular carcinoma in TCGA
3.0 years ago
jomo018 • 480
2
Votes
2
Replies
452
Views
Answer: C: Why names() returns empty?
3.0 years ago
jomo018 • 480
0
Votes
1
Reply
752
Views
Comment: C: bedtools fisher interpretation of "in -a" "not in -b"
3.0 years ago
jomo018 • 480
0
Votes
1
Reply
752
Views
Comment: C: bedtools fisher interpretation of "in -a" "not in -b"
3.0 years ago
jomo018 • 480
0
Votes
1
Reply
752
Views
Comment: C: bedtools fisher interpretation of "in -a" "not in -b"
3.0 years ago
jomo018 • 480
0
Votes
1
Reply
752
Views
Comment: C: bedtools fisher interpretation of "in -a" "not in -b"
3.0 years ago
jomo018 • 480
0
Votes
9
Replies
752
Views
bedtools fisher interpretation of "in -a" "not in -b"
intersection bedtools fisher
3.0 years ago
jomo018 • 480
1
Vote
0
Replies
550
Views
Answer: A: How to proceed from these methylation .txt files?
3.0 years ago
jomo018 • 480
1
Vote
1
Reply
560
Views
Answer: A: For cancer classification, can I use normal tissue sample of patients?
3.0 years ago
jomo018 • 480
0
Votes
1
Reply
491
Views
Answer: A: How determine to read specific size from file using R language
3.0 years ago
jomo018 • 480
1
Vote
1
Reply
890
Views
Comment: C: fastq parsing inefficiencies with python
3.1 years ago
jomo018 • 480
2
Votes
0
Replies
890
Views
Comment: C: fastq parsing inefficiencies with python
3.1 years ago
jomo018 • 480
0
Votes
0
Replies
518
Views
Comment: C: split seq in fasta file in groups according to seq similarity?
3.1 years ago
jomo018 • 480
0
Votes
0
Replies
401
Views
Comment: C: What is special in a BED file
3.1 years ago
jomo018 • 480
1
Vote
3
Replies
401
Views
What is special in a BED file
next-gen sequencing pipeline
3.1 years ago
jomo018 • 480
2
Votes
1
Reply
582
Views
Answer: A: Technical question about python "to find the strings"
3.1 years ago
jomo018 • 480
0
Votes
1
Reply
1.7k
Views
Comment: C: Problem with methylKit and Bismark
3.1 years ago
jomo018 • 480
0
Votes
0
Replies
796
Views
Comment: C: vcf2bed giving empty bed file as output
3.1 years ago
jomo018 • 480
1
Vote
0
Replies
920
Views
Answer: A: Please clarify me about countOverlaps()?
3.1 years ago
jomo018 • 480
3
Votes
1
Reply
9.0k
Views
Answer: A: How to remove the empty line in using python
3.1 years ago
jomo018 • 480
0
Votes
0
Replies
922
Views
Answer: A: problem in fastq-dump of SRA file
3.2 years ago
jomo018 • 480
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