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User 7754 • 230
Status: New
Handle: @User 77542270
Reputation: 230
Joined: 19 months ago
Last seen: 23 months ago
Location: United Kingdom

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0
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1
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188
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Find region that full captures association signal
GWAS LD pvalue
20 months ago
User 7754 • 230 • updated 20 months ago
christopher medway • 440
0
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1
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219
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Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
21 months ago
User 7754 • 230
0
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1
Reply
219
Views
Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
21 months ago
User 7754 • 230
0
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0
Replies
219
Views
Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
21 months ago
User 7754 • 230
2
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7
Replies
219
Views
How to compute enrichment of one feature in the other across the genome (log fold, and pvalue)
genome enrichment
21 months ago
User 7754 • 230
0
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1
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215
Views
Comment: C: Batch download of bed files for all transcription factors associated with a cell
21 months ago
User 7754 • 230
2
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3
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215
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Batch download of bed files for all transcription factors associated with a cell type
ChIP-Seq Transcription factors cell-type specific
21 months ago
User 7754 • 230 • updated 21 months ago
ATpoint 17k
0
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1
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669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
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1
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669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
16
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31
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669
Views
Finding the best model for expression data (RNA-Seq counts)
RNA-Seq glm model fit regression
22 months ago
User 7754 • 230 • updated 22 months ago
i.sudbery 4.7k
1
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2
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669
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Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
1
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0
Replies
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
1
Vote
1
Reply
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
Votes
1
Reply
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
Votes
1
Reply
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
Votes
1
Reply
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
Votes
1
Reply
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
Votes
1
Reply
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
Votes
1
Reply
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
Votes
2
Replies
669
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754 • 230
0
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0
Replies
208
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Empirical p-value after sampling matching distribution in R
R empirical p-value sampling binning
23 months ago
User 7754 • 230
0
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0
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669
Views
Comment: C: Bedtools Error: Type checker found wrong number of fields while tokenizing data
2.2 years ago
User 7754 • 230
2
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5
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669
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Bedtools Error: Type checker found wrong number of fields while tokenizing data line.
bedtools
2.2 years ago
User 7754 • 230 • updated 2.2 years ago
Alex Reynolds 28k
0
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1
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669
Views
Comment: C: Bedtools Error: Type checker found wrong number of fields while tokenizing data
2.2 years ago
User 7754 • 230
0
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0
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259
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GenomicRanges based on indices or more conditions, and add column from match
genomicRanges overlaps R
2.3 years ago
User 7754 • 230
3
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2
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312
Views
Get indices from GenomicRanges reduce function
GenomicRanges reduce R
2.4 years ago
User 7754 • 230 • updated 2.3 years ago
Nicolas Rosewick 7.7k
1
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1
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483
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Comment: C: R reduce across multiple ranges by row
2.4 years ago
User 7754 • 230
0
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1
Reply
483
Views
Comment: C: R reduce across multiple ranges by row
2.4 years ago
User 7754 • 230
4
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9
Replies
483
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R reduce across multiple ranges by row
genomicranges R ranges reduce
2.4 years ago
User 7754 • 230 • updated 2.4 years ago
RamRS 21k
0
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0
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483
Views
Comment: C: R reduce across multiple ranges by row
2.4 years ago
User 7754 • 230 • updated 2.4 years ago
RamRS 21k
3
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2
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312
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R package to annotate and explore effect of biases in RNA Seq
R RNA-Seq annotation
2.4 years ago
User 7754 • 230 • updated 2.4 years ago
h.mon 25k
0
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1
Reply
480
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Comment: C: Understanding HiChIP data and interactions
2.4 years ago
User 7754 • 230
2
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3
Replies
480
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Understanding HiChIP data and interactions
HiChIP
2.4 years ago
User 7754 • 230 • updated 2.4 years ago
Devon Ryan 90k
5
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4
Replies
2.3k
Views
GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
R GenomicFeatures
5.3 years ago
User 7754 • 230 • updated 3.1 years ago
Biostar 20
2
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2
Replies
1.5k
Views
[SOLVED] Trying to apply overlap to each row of a "GRangesList"
R apply loop
5.3 years ago
User 7754 • 230 • updated 3.5 years ago
Biostar 20
0
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0
Replies
1.6k
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Comment: C: Convert INDEL format for use in Annovar
4.3 years ago
User 7754 • 230
0
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1
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1.6k
Views
Comment: C: Convert INDEL format for use in Annovar
4.3 years ago
User 7754 • 230
1
Vote
4
Replies
1.6k
Views
Convert INDEL format for use in Annovar
annovar indel annotation insertion-deletion
4.3 years ago
User 7754 • 230 • updated 4.3 years ago
igor 7.7k
4
Votes
1
Reply
1.5k
Views
Is it possible to specify a reference allele while computing LD in Plink?
Plink allele
5.4 years ago
User 7754 • 230 • updated 4.6 years ago
Biostar 20
0
Votes
0
Replies
979
Views
IMPUTE2 reference allele: same as matrixEQTL?
SNP imputation impute2 matrixEQTL
4.6 years ago
User 7754 • 230
0
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0
Replies
1.5k
Views
Comment: C: bedtools intersectBed and GRanges countOverlaps
4.8 years ago
User 7754 • 230
4
Votes
2
Replies
1.5k
Views
bedtools intersectBed and GRanges countOverlaps
R bed bedtools GenomicRanges
4.8 years ago
User 7754 • 230 • updated 4.8 years ago
Alex Reynolds 28k
0
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0
Replies
1.6k
Views
Software to run genetic association analysis between a phenotype and SNPs, conditional on the top SNP
association SNP phenotype conditional analysis
4.8 years ago
User 7754 • 230
0
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0
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2.0k
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Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
5.3 years ago
User 7754 • 230
0
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5
Replies
2.0k
Views
P-value for enrichment of ChIP-Seq peaks within a genomic annotation
ChIP-Seq
5.3 years ago
User 7754 • 230
0
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1
Reply
2.0k
Views
Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
5.3 years ago
User 7754 • 230
0
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1
Reply
1.3k
Views
Comment: C: Enrichment determination from random sampling
5.3 years ago
User 7754 • 230
1
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0
Replies
2.3k
Views
Comment: C: GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
5.3 years ago
User 7754 • 230
1
Vote
1
Reply
2.3k
Views
Answer: A: GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
5.3 years ago
User 7754 • 230
0
Votes
0
Replies
1.5k
Views
Answer: C: Trying to apply overlap to each row of a "GRangesList"
5.3 years ago
User 7754 • 230
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