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User 7754 • 230
Status: New
Handle: @User 77542270
Reputation: 230
Email: f*********@gmail.com
Joined: 13 months ago
Last seen: 17 months ago
Location: United Kingdom

Posts Awards
0
Votes
1
Reply
188
Views
Find region that full captures association signal
GWAS LD pvalue
14 months ago
User 7754 • 230 • updated 14 months ago
christopher medway • 440
0
Votes
1
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216
Views
Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
15 months ago
User 7754 • 230
0
Votes
1
Reply
216
Views
Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
15 months ago
User 7754 • 230
0
Votes
0
Replies
216
Views
Comment: C: How to compute enrichment of one feature in the other across the genome (log fol
15 months ago
User 7754 • 230
2
Votes
7
Replies
216
Views
How to compute enrichment of one feature in the other across the genome (log fold, and pvalue)
genome enrichment
15 months ago
User 7754 • 230
0
Votes
1
Reply
213
Views
Comment: C: Batch download of bed files for all transcription factors associated with a cell
15 months ago
User 7754 • 230
2
Votes
3
Replies
213
Views
Batch download of bed files for all transcription factors associated with a cell type
ChIP-Seq Transcription factors cell-type specific
15 months ago
User 7754 • 230 • updated 15 months ago
ATpoint 17k
0
Votes
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
16 months ago
User 7754 • 230
0
Votes
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
16 months ago
User 7754 • 230
16
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31
Replies
663
Views
Finding the best model for expression data (RNA-Seq counts)
RNA-Seq glm model fit regression
17 months ago
User 7754 • 230 • updated 17 months ago
i.sudbery 4.7k
1
Vote
2
Replies
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
1
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0
Replies
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
1
Vote
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
0
Votes
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
0
Votes
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
0
Votes
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
0
Votes
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
0
Votes
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
0
Votes
1
Reply
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
0
Votes
2
Replies
663
Views
Comment: C: Finding the best model for expression data (RNA-Seq counts)
17 months ago
User 7754 • 230
0
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0
Replies
208
Views
Empirical p-value after sampling matching distribution in R
R empirical p-value sampling binning
17 months ago
User 7754 • 230
0
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0
Replies
669
Views
Comment: C: Bedtools Error: Type checker found wrong number of fields while tokenizing data
21 months ago
User 7754 • 230
2
Votes
5
Replies
669
Views
Bedtools Error: Type checker found wrong number of fields while tokenizing data line.
bedtools
21 months ago
User 7754 • 230 • updated 21 months ago
Alex Reynolds 28k
0
Votes
1
Reply
669
Views
Comment: C: Bedtools Error: Type checker found wrong number of fields while tokenizing data
21 months ago
User 7754 • 230
0
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0
Replies
259
Views
GenomicRanges based on indices or more conditions, and add column from match
genomicRanges overlaps R
22 months ago
User 7754 • 230
3
Votes
2
Replies
312
Views
Get indices from GenomicRanges reduce function
GenomicRanges reduce R
22 months ago
User 7754 • 230 • updated 22 months ago
Nicolas Rosewick 7.7k
1
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1
Reply
483
Views
Comment: C: R reduce across multiple ranges by row
23 months ago
User 7754 • 230
0
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1
Reply
483
Views
Comment: C: R reduce across multiple ranges by row
23 months ago
User 7754 • 230
4
Votes
9
Replies
483
Views
R reduce across multiple ranges by row
genomicranges R ranges reduce
23 months ago
User 7754 • 230 • updated 23 months ago
RamRS 21k
0
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0
Replies
483
Views
Comment: C: R reduce across multiple ranges by row
23 months ago
User 7754 • 230 • updated 23 months ago
RamRS 21k
3
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2
Replies
311
Views
R package to annotate and explore effect of biases in RNA Seq
R RNA-Seq annotation
23 months ago
User 7754 • 230 • updated 23 months ago
h.mon 25k
0
Votes
1
Reply
479
Views
Comment: C: Understanding HiChIP data and interactions
23 months ago
User 7754 • 230
2
Votes
3
Replies
479
Views
Understanding HiChIP data and interactions
HiChIP
23 months ago
User 7754 • 230 • updated 23 months ago
Devon Ryan 90k
5
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4
Replies
2.3k
Views
GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
R GenomicFeatures
4.8 years ago
User 7754 • 230 • updated 2.6 years ago
Biostar 20
2
Votes
2
Replies
1.5k
Views
[SOLVED] Trying to apply overlap to each row of a "GRangesList"
R apply loop
4.9 years ago
User 7754 • 230 • updated 3.0 years ago
Biostar 20
0
Votes
0
Replies
1.6k
Views
Comment: C: Convert INDEL format for use in Annovar
3.9 years ago
User 7754 • 230
0
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1
Reply
1.6k
Views
Comment: C: Convert INDEL format for use in Annovar
3.9 years ago
User 7754 • 230
1
Vote
4
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1.6k
Views
Convert INDEL format for use in Annovar
annovar indel annotation insertion-deletion
3.9 years ago
User 7754 • 230 • updated 3.9 years ago
igor 7.7k
4
Votes
1
Reply
1.5k
Views
Is it possible to specify a reference allele while computing LD in Plink?
Plink allele
4.9 years ago
User 7754 • 230 • updated 4.1 years ago
Biostar 20
0
Votes
0
Replies
978
Views
IMPUTE2 reference allele: same as matrixEQTL?
SNP imputation impute2 matrixEQTL
4.1 years ago
User 7754 • 230
0
Votes
0
Replies
1.5k
Views
Comment: C: bedtools intersectBed and GRanges countOverlaps
4.3 years ago
User 7754 • 230
4
Votes
2
Replies
1.5k
Views
bedtools intersectBed and GRanges countOverlaps
R bed bedtools GenomicRanges
4.3 years ago
User 7754 • 230 • updated 4.3 years ago
Alex Reynolds 28k
0
Votes
0
Replies
1.6k
Views
Software to run genetic association analysis between a phenotype and SNPs, conditional on the top SNP
association SNP phenotype conditional analysis
4.3 years ago
User 7754 • 230
0
Votes
0
Replies
2.0k
Views
Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
4.8 years ago
User 7754 • 230
0
Votes
5
Replies
2.0k
Views
P-value for enrichment of ChIP-Seq peaks within a genomic annotation
ChIP-Seq
4.8 years ago
User 7754 • 230
0
Votes
1
Reply
2.0k
Views
Comment: C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
4.8 years ago
User 7754 • 230
0
Votes
1
Reply
1.3k
Views
Comment: C: Enrichment determination from random sampling
4.8 years ago
User 7754 • 230
1
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0
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2.3k
Views
Comment: C: GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
4.8 years ago
User 7754 • 230
1
Vote
1
Reply
2.3k
Views
Answer: A: GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
4.8 years ago
User 7754 • 230
0
Votes
0
Replies
1.5k
Views
Answer: C: Trying to apply overlap to each row of a "GRangesList"
4.9 years ago
User 7754 • 230
0
Votes
1
Reply
2.6k
Views
Circos or circlize plot for overlapping values/colors
circos circlize
5.7 years ago
User 7754 • 230 • updated 4.9 years ago
Biostar 20
2
Votes
8
Replies
1.1k
Views
bedop: output overlap for each region in a file
BEDOP overlap
4.9 years ago
User 7754 • 230 • updated 4.9 years ago
Alex Reynolds 28k
0
Votes
1
Reply
1.1k
Views
Comment: C: bedop: output overlap for each region in a file
4.9 years ago
User 7754 • 230
0
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0
Replies
1.1k
Views
Answer: A: bedop: output overlap for each region in a file
4.9 years ago
User 7754 • 230
2
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0
Replies
1.5k
Views
Answer: A: Is it possible to specify a reference allele while computing LD in Plink?
4.9 years ago
User 7754 • 230
0
Votes
0
Replies
1.5k
Views
Definition of splicing eQTLs in RNA-Seq and arrays
snp RNA-Seq genome
5.2 years ago
User 7754 • 230 • updated 5.1 years ago
Biostar 20
0
Votes
0
Replies
1.9k
Views
Comment: C: Quality control filter by genotype counts in a GWAS?
5.4 years ago
User 7754 • 230
0
Votes
1
Reply
1.9k
Views
Comment: C: Quality control filter by genotype counts in a GWAS?
5.4 years ago
User 7754 • 230
2
Votes
6
Replies
1.9k
Views
Quality control filter by genotype counts in a GWAS?
gwas filter
5.4 years ago
User 7754 • 230 • updated 5.4 years ago
chrchang523 5.2k
0
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0
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1.9k
Views
Comment: C: Quality control filter by genotype counts in a GWAS?
5.4 years ago
User 7754 • 230
0
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0
Replies
1.5k
Views
Tools for alternative splicing of distant genes
RNA-Seq SNP alternative splicing
5.6 years ago
User 7754 • 230
0
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0
Replies
3.4k
Views
Comment: C: From vcf 1000 Genomes plink readable file: is there a way to convert it all (not
5.7 years ago
User 7754 • 230
0
Votes
1
Reply
3.4k
Views
Comment: C: From vcf 1000 Genomes plink readable file: is there a way to convert it all (not
5.7 years ago
User 7754 • 230
5
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4
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3.4k
Views
From vcf 1000 Genomes plink readable file: is there a way to convert it all (not only one region)?
1000Genomes vcf plink
5.7 years ago
User 7754 • 230 • updated 5.7 years ago
chrchang523 5.2k
0
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0
Replies
2.6k
Views
Comment: C: Circos plot for overlapping values/colors
5.7 years ago
User 7754 • 230
0
Votes
1
Reply
2.3k
Views
Expression Quantitative Trait Loci Analysis Using Rpkm In R
eqtl rpkm qc
6.5 years ago
User 7754 • 230
0
Votes
1
Reply
6.4k
Views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
8.1 years ago
User 7754 • 230
0
Votes
1
Reply
6.4k
Views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
8.1 years ago
User 7754 • 230
0
Votes
1
Reply
6.4k
Views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
8.1 years ago
User 7754 • 230
0
Votes
1
Reply
6.4k
Views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
8.1 years ago
User 7754 • 230
0
Votes
1
Reply
6.4k
Views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
8.1 years ago
User 7754 • 230
5
Votes
18
Replies
6.4k
Views
Plot Genes In R Under A Regional Manhattan Plot
r gene plot
8.1 years ago
User 7754 • 230 • updated 8.1 years ago
Leonor Palmeira 3.7k
0
Votes
1
Reply
6.4k
Views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
8.1 years ago
User 7754 • 230
0
Votes
1
Reply
6.4k
Views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
8.1 years ago
User 7754 • 230
0
Votes
1
Reply
6.4k
Views
Comment: C: Plot Genes In R Under A Regional Manhattan Plot
8.1 years ago
User 7754 • 230
0
Votes
4
Replies
1.9k
Views
Combined Association Of Expression, Genetic, Clinical Phenotypes
eqtl genetics association
9.0 years ago
User 7754 • 230 • updated 8.8 years ago
Larry_Parnell 16k
3
Votes
0
Replies
8.8k
Views
Comment: C: Eqtl Database Available?
9.0 years ago
User 7754 • 230
4
Votes
8
Replies
3.2k
Views
Visualise Ld Plots On Whole Chromosome
linkage mapping next-gen sequencing
9.1 years ago
User 7754 • 230 • updated 9.0 years ago
Hitchpy • 0
0
Votes
0
Replies
3.2k
Views
Comment: C: Visualise Ld Plots On Whole Chromosome
9.1 years ago
User 7754 • 230
0
Votes
0
Replies
3.2k
Views
Comment: C: Visualise Ld Plots On Whole Chromosome
9.1 years ago
User 7754 • 230
0
Votes
0
Replies
3.2k
Views
Comment: C: Visualise Ld Plots On Whole Chromosome
9.1 years ago
User 7754 • 230
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