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About
User 7754 • 230
Status:
New
Handle:
@User 77542270
Reputation:
230
Joined:
19 months ago
Last seen:
23 months ago
Location:
United Kingdom
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comments
0
Votes
1
Reply
188
Views
Find region that full captures association signal
GWAS
LD
pvalue
20 months ago
User 7754
• 230
• updated 20 months ago
christopher medway
• 440
0
Votes
1
Reply
219
Views
Comment:
C: How to compute enrichment of one feature in the other across the genome (log fol
21 months ago
User 7754
• 230
0
Votes
1
Reply
219
Views
Comment:
C: How to compute enrichment of one feature in the other across the genome (log fol
21 months ago
User 7754
• 230
0
Votes
0
Replies
219
Views
Comment:
C: How to compute enrichment of one feature in the other across the genome (log fol
21 months ago
User 7754
• 230
2
Votes
7
Replies
219
Views
How to compute enrichment of one feature in the other across the genome (log fold, and pvalue)
genome
enrichment
21 months ago
User 7754
• 230
0
Votes
1
Reply
215
Views
Comment:
C: Batch download of bed files for all transcription factors associated with a cell
21 months ago
User 7754
• 230
2
Votes
3
Replies
215
Views
Batch download of bed files for all transcription factors associated with a cell type
ChIP-Seq
Transcription factors
cell-type specific
21 months ago
User 7754
• 230
• updated 21 months ago
ATpoint
17k
0
Votes
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
16
Votes
31
Replies
669
Views
Finding the best model for expression data (RNA-Seq counts)
RNA-Seq
glm
model fit
regression
22 months ago
User 7754
• 230
• updated 22 months ago
i.sudbery
4.7k
1
Vote
2
Replies
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
1
Vote
0
Replies
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
1
Vote
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
1
Reply
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
2
Replies
669
Views
Comment:
C: Finding the best model for expression data (RNA-Seq counts)
22 months ago
User 7754
• 230
0
Votes
0
Replies
208
Views
Empirical p-value after sampling matching distribution in R
R
empirical
p-value
sampling
binning
23 months ago
User 7754
• 230
0
Votes
0
Replies
669
Views
Comment:
C: Bedtools Error: Type checker found wrong number of fields while tokenizing data
2.2 years ago
User 7754
• 230
2
Votes
5
Replies
669
Views
Bedtools Error: Type checker found wrong number of fields while tokenizing data line.
bedtools
2.2 years ago
User 7754
• 230
• updated 2.2 years ago
Alex Reynolds
28k
0
Votes
1
Reply
669
Views
Comment:
C: Bedtools Error: Type checker found wrong number of fields while tokenizing data
2.2 years ago
User 7754
• 230
0
Votes
0
Replies
259
Views
GenomicRanges based on indices or more conditions, and add column from match
genomicRanges
overlaps
R
2.3 years ago
User 7754
• 230
3
Votes
2
Replies
312
Views
Get indices from GenomicRanges reduce function
GenomicRanges
reduce
R
2.4 years ago
User 7754
• 230
• updated 2.3 years ago
Nicolas Rosewick
7.7k
1
Vote
1
Reply
483
Views
Comment:
C: R reduce across multiple ranges by row
2.4 years ago
User 7754
• 230
0
Votes
1
Reply
483
Views
Comment:
C: R reduce across multiple ranges by row
2.4 years ago
User 7754
• 230
4
Votes
9
Replies
483
Views
R reduce across multiple ranges by row
genomicranges
R
ranges
reduce
2.4 years ago
User 7754
• 230
• updated 2.4 years ago
RamRS
21k
0
Votes
0
Replies
483
Views
Comment:
C: R reduce across multiple ranges by row
2.4 years ago
User 7754
• 230
• updated 2.4 years ago
RamRS
21k
3
Votes
2
Replies
312
Views
R package to annotate and explore effect of biases in RNA Seq
R
RNA-Seq
annotation
2.4 years ago
User 7754
• 230
• updated 2.4 years ago
h.mon
25k
0
Votes
1
Reply
480
Views
Comment:
C: Understanding HiChIP data and interactions
2.4 years ago
User 7754
• 230
2
Votes
3
Replies
480
Views
Understanding HiChIP data and interactions
HiChIP
2.4 years ago
User 7754
• 230
• updated 2.4 years ago
Devon Ryan
90k
5
Votes
4
Replies
2.3k
Views
GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
R
GenomicFeatures
5.3 years ago
User 7754
• 230
• updated 3.1 years ago
Biostar
20
2
Votes
2
Replies
1.5k
Views
[SOLVED] Trying to apply overlap to each row of a "GRangesList"
R
apply
loop
5.3 years ago
User 7754
• 230
• updated 3.5 years ago
Biostar
20
0
Votes
0
Replies
1.6k
Views
Comment:
C: Convert INDEL format for use in Annovar
4.3 years ago
User 7754
• 230
0
Votes
1
Reply
1.6k
Views
Comment:
C: Convert INDEL format for use in Annovar
4.3 years ago
User 7754
• 230
1
Vote
4
Replies
1.6k
Views
Convert INDEL format for use in Annovar
annovar
indel
annotation
insertion-deletion
4.3 years ago
User 7754
• 230
• updated 4.3 years ago
igor
7.7k
4
Votes
1
Reply
1.5k
Views
Is it possible to specify a reference allele while computing LD in Plink?
Plink
allele
5.4 years ago
User 7754
• 230
• updated 4.6 years ago
Biostar
20
0
Votes
0
Replies
979
Views
IMPUTE2 reference allele: same as matrixEQTL?
SNP
imputation
impute2
matrixEQTL
4.6 years ago
User 7754
• 230
0
Votes
0
Replies
1.5k
Views
Comment:
C: bedtools intersectBed and GRanges countOverlaps
4.8 years ago
User 7754
• 230
4
Votes
2
Replies
1.5k
Views
bedtools intersectBed and GRanges countOverlaps
R
bed
bedtools
GenomicRanges
4.8 years ago
User 7754
• 230
• updated 4.8 years ago
Alex Reynolds
28k
0
Votes
0
Replies
1.6k
Views
Software to run genetic association analysis between a phenotype and SNPs, conditional on the top SNP
association
SNP
phenotype
conditional analysis
4.8 years ago
User 7754
• 230
0
Votes
0
Replies
2.0k
Views
Comment:
C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
5.3 years ago
User 7754
• 230
0
Votes
5
Replies
2.0k
Views
P-value for enrichment of ChIP-Seq peaks within a genomic annotation
ChIP-Seq
5.3 years ago
User 7754
• 230
0
Votes
1
Reply
2.0k
Views
Comment:
C: P-value for enrichment of ChIP-Seq peaks within a genomic annotation
5.3 years ago
User 7754
• 230
0
Votes
1
Reply
1.3k
Views
Comment:
C: Enrichment determination from random sampling
5.3 years ago
User 7754
• 230
1
Vote
0
Replies
2.3k
Views
Comment:
C: GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
5.3 years ago
User 7754
• 230
1
Vote
1
Reply
2.3k
Views
Answer:
A: GenomicFeatures makeTxDbFromGFF: Select by columns in gtf file
5.3 years ago
User 7754
• 230
0
Votes
0
Replies
1.5k
Views
Answer:
C: Trying to apply overlap to each row of a "GRangesList"
5.3 years ago
User 7754
• 230
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