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Ido Tamir ♦ 5.0k
Role: New
Status: New
Handle: @Ido Tamir2259
Reputation: 4960
Email: i*********@imp.ac.at
Joined: 9 months ago
Last seen: 20 months ago
Location: Austria

Tired of missing provenance for your fastq files?

Not knowing which scales the qualities are on?

 

Handling two files for paired end reads instead of one?

 

 

Try bam files instead! A well defined specification (for biological standards). Easy to use tools.

 

Convert illumina basecalls to bam files fresh from the machine: illumina2bam https://github.com/gq1/illumina2bam

 

Comment: C: Rsamtools-Countoverlaps
0 Votes | 0 Replies
8.6 years ago
Ido Tamir
5.0k
• updated 10 months ago
RamRS
21k
Answer: A: Rsamtools-Countoverlaps
1 Vote | 0 Replies
8.6 years ago
Ido Tamir
5.0k
• updated 10 months ago
RamRS
21k
Answer: A: How To Create A Matrix In R?
2 Votes | 4 Replies
8.6 years ago
Ido Tamir
5.0k
• updated 10 months ago
RamRS
21k
Comment: C: BCL files as deliverables from a sequencing center
0 Votes | 1 Reply
10 months ago
Ido Tamir
5.0k
Comment: C: BCL files as deliverables from a sequencing center
0 Votes | 0 Replies
10 months ago
Ido Tamir
5.0k
Answer: A: Statistics on differentially expressed genes
0 Votes | 0 Replies
12 months ago
Ido Tamir
5.0k
Comment: C: DESeq2-issues with input data
1 Vote | 0 Replies
12 months ago
Ido Tamir
5.0k
Comment: C: ggplot2 returns empty plot
3 Votes | 1 Reply
12 months ago
Ido Tamir
5.0k
Answer: A: How to take out sequences with barcode?
0 Votes | 1 Reply
13 months ago
Ido Tamir
5.0k
Comment: C: How To Get Gene Regions +3Kb Upstream
0 Votes | 0 Replies
7.5 years ago
Ido Tamir
5.0k
• updated 14 months ago
RamRS
21k
Answer: A: How To Get Gene Regions +3Kb Upstream
1 Vote | 0 Replies
7.5 years ago
Ido Tamir
5.0k
• updated 14 months ago
RamRS
21k
Comment: C: RNA-Seq Differential Expression Bash Scripting Error
0 Votes | 0 Replies
15 months ago
Ido Tamir
5.0k
Answer: A: FastQC:"Per Base Sequence Quality"
3 Votes | 0 Replies
19 months ago
Ido Tamir
5.0k
Answer: A: ggplot: adjust X ticks positions in boxplots
0 Votes | 0 Replies
20 months ago
Ido Tamir
5.0k
Answer: A: Markduplicates in RNASEQ
2 Votes | 0 Replies
2.3 years ago
Ido Tamir
5.0k
Comment: C: wrong bam file format
0 Votes | 0 Replies
2.7 years ago
Ido Tamir
5.0k
Answer: A: wrong bam file format
0 Votes | 1 Reply
2.7 years ago
Ido Tamir
5.0k
Comment: C: How to convert TPM to raw reads
0 Votes | 1 Reply
2.8 years ago
Ido Tamir
5.0k
Answer: A: FPKM vs READ COUNT
0 Votes | 0 Replies
2.8 years ago
Ido Tamir
5.0k
Answer: A: R multiple parameters
3 Votes | 1 Reply
2.9 years ago
Ido Tamir
5.0k
Comment: C: Deciding for the threshold for scores?
0 Votes | 1 Reply
3.5 years ago
Ido Tamir
5.0k
Comment: C: How to imagine the future of bioinformatics?
1 Vote | 0 Replies
3.5 years ago
Ido Tamir
5.0k
Comment: C: Small percentage of overlapping chip-seq peaks
2 Votes | 1 Reply
3.5 years ago
Ido Tamir
5.0k
Comment: C: lncRNA annoatation in common crap
2 Votes | 0 Replies
3.6 years ago
Ido Tamir
5.0k
Comment: C: lncRNA annoatation in common crap
0 Votes | 0 Replies
3.6 years ago
Ido Tamir
5.0k
Comment: C: lncRNA annoatation in common crap
0 Votes | 1 Reply
3.6 years ago
Ido Tamir
5.0k
Answer: A: read quality of sequence by fastqc
1 Vote | 0 Replies
3.7 years ago
Ido Tamir
5.0k
Comment: C: Mouse RNASeq, 50% discordant reads
0 Votes | 0 Replies
4.0 years ago
Ido Tamir
5.0k
Comment: C: NGS pipelines @ free of cost
0 Votes | 0 Replies
4.2 years ago
Ido Tamir
5.0k
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