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user31888 • 60
Status: New
Handle: @user3188821820
Reputation: 60
Email: u*********@gmail.com
Joined: 16 months ago
Last seen: 18 months ago
Location: United States

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Comment: C: Divergent number of replicates between FastQC and samtools
17 months ago
user31888 • 60
1
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1
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241
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Comment: C: Divergent number of replicates between FastQC and samtools
17 months ago
user31888 • 60
9
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8
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241
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Divergent number of replicates between FastQC and samtools
fastqc STAR samtools
17 months ago
user31888 • 60 • updated 17 months ago
i.sudbery 4.7k
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241
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Comment: C: Divergent number of replicates between FastQC and samtools
17 months ago
user31888 • 60
0
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156
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Comment: C: Normalisation of reference dataset for scRNA cell type annotation
18 months ago
user31888 • 60
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1
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156
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Comment: C: Normalisation of reference dataset for scRNA cell type annotation
18 months ago
user31888 • 60
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4
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156
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Normalisation of reference dataset for scRNA cell type annotation
scRNA scmap cell type Human Primary Cell Atlas
18 months ago
user31888 • 60
2
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10
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302
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Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
single cell demultiplexing
19 months ago
user31888 • 60
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1
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302
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Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
19 months ago
user31888 • 60
0
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1
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302
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Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
19 months ago
user31888 • 60
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302
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Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
19 months ago
user31888 • 60
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0
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302
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Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
19 months ago
user31888 • 60
0
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402
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Answer: A: PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA dataset
19 months ago
user31888 • 60
0
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376
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Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
21 months ago
user31888 • 60
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1
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376
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Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
21 months ago
user31888 • 60
5
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4
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376
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What batch correction was applied to pan-Cancer mRNA expression data?
TCGA pan-Cancer Atlas mRNA normalisation
21 months ago
user31888 • 60 • updated 21 months ago
i.sudbery 4.7k
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1
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677
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Comment: C: How to normalize median-center log-transform an expression matrix
22 months ago
user31888 • 60
1
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3
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677
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How to normalize median-center log-transform an expression matrix
R RNA-Seq
22 months ago
user31888 • 60
0
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1
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658
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Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
2.3 years ago
user31888 • 60
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1
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658
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Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
2.3 years ago
user31888 • 60
3
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5
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658
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Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
TCGA TCGAbiolinks GenomicDataCommons
2.3 years ago
user31888 • 60
0
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0
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477
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Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
2.3 years ago
user31888 • 60
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0
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477
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Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
2.3 years ago
user31888 • 60
0
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2
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477
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Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
2.3 years ago
user31888 • 60
0
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1
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477
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Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
2.3 years ago
user31888 • 60
0
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7
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477
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Convert GDCResults object (nested lists) to a human readable data frame
GenomicDataCommon R list data frame
2.3 years ago
user31888 • 60
0
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0
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471
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Comment: C: featureCount vs GENCODE gene lengths
2.3 years ago
user31888 • 60
3
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4
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471
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featureCount vs GENCODE gene lengths
featureCount GENCODE
2.3 years ago
user31888 • 60 • updated 2.3 years ago
Emily_Ensembl 18k
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471
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Comment: C: featureCount vs GENCODE gene lengths
2.3 years ago
user31888 • 60
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2.4k
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Comment: C: Get gene length with R
2.4 years ago
user31888 • 60
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1
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2.4k
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Comment: C: Get gene length with R
2.4 years ago
user31888 • 60
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1
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2.4k
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Comment: C: Get gene length with R
2.4 years ago
user31888 • 60
2
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7
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2.4k
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Get gene length with R
R
2.4 years ago
user31888 • 60
0
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1
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1.7k
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Comment: C: Normalization scaling factors: formula for applying them to raw counts
2.4 years ago
user31888 • 60
0
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1
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1.9k
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strand bias filtering with bcftools
bcftools samtools Phred
3.6 years ago
user31888 • 60 • updated 2.7 years ago
Kevin Blighe 43k
0
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1
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1.6k
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Comment: C: Alternative splicing: explanation about delta psi values
3.0 years ago
user31888 • 60
0
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4
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1.6k
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Alternative splicing: explanation about delta psi values
MISO alternative splicing psi
3.0 years ago
user31888 • 60 • updated 3.0 years ago
kristoffer.vittingseerup ♦ 1.8k
0
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1
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1.0k
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Precision of loss of heterozygosity detection with Sanger sequencing vs copy number analysis
LOH CNV Sanger Sequencing
3.0 years ago
user31888 • 60 • updated 3.0 years ago
Eric T. ♦ 2.4k
0
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2
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734
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Comment: C: Program to validate NGS variants from Sanger sequencing
3.0 years ago
user31888 • 60
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4
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734
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Program to validate NGS variants from Sanger sequencing
NGS Sanger Validation
3.1 years ago
user31888 • 60
0
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1
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645
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Comment: C: Does a database of pathogenic transcripts exist?
3.3 years ago
user31888 • 60
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645
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Comment: C: Does a database of pathogenic transcripts exist?
3.3 years ago
user31888 • 60
4
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7
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645
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Does a database of pathogenic transcripts exist?
RNA-Seq database
3.3 years ago
user31888 • 60 • updated 3.3 years ago
h.mon 25k
0
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1
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727
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Comment: C: Inverted base and amino acid change in Annovar
3.3 years ago
user31888 • 60
0
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1
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727
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Comment: C: Inverted base and amino acid change in Annovar
3.3 years ago
user31888 • 60
0
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5
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727
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Inverted base and amino acid change in Annovar
annovar
3.3 years ago
user31888 • 60
0
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0
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3.6k
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Comment: C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
3.7 years ago
user31888 • 60
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0
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3.6k
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Comment: C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
3.7 years ago
user31888 • 60
3
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9
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3.6k
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R: converting Ensembl row names to Symbol ID outputs missing values in 'row.names' are not allowed
R
3.7 years ago
user31888 • 60 • updated 3.7 years ago
Liun • 30
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0
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3.6k
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Comment: C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
3.7 years ago
user31888 • 60
0
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1
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3.6k
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Answer: A: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
3.7 years ago
user31888 • 60
0
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0
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3.6k
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Answer: A: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
3.7 years ago
user31888 • 60
0
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1
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808
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Comment: C: Comparing two differential expression experiments
3.7 years ago
user31888 • 60
0
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3
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808
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Comparing two differential expression experiments
differential expression DESeq
3.7 years ago
user31888 • 60
0
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3
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1.6k
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GATK SPlitNCigarReads memory issue
GATK SplitNCigarReads
3.8 years ago
user31888 • 60
0
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0
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1.6k
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Comment: C: GATK SPlitNCigarReads memory issue
3.8 years ago
user31888 • 60
0
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3
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884
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Allele with high population frequency also tagged as pathogenic
Allele Frequency Pathogenecity
3.9 years ago
user31888 • 60
0
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0
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1.3k
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Comment: C: CNVkit - Proper Way to Generate Accurate Sex Chromosome Predictions
4.0 years ago
user31888 • 60
0
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1
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1.3k
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Comment: C: CNVkit - Proper Way to Generate Accurate Sex Chromosome Predictions
4.0 years ago
user31888 • 60
0
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0
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1.6k
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Comment: C: bam-readcount installation problem: Linking CXX executable
4.4 years ago
user31888 • 60
1
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2
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1.6k
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bam-readcount installation problem: Linking CXX executable
bam-readcount
4.4 years ago
user31888 • 60
2
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0
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1.7k
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GATK DepthOfCoverage: 'total coverage' and 'mean coverage' meaning
GATK DepthOfCoverage
4.5 years ago
user31888 • 60
0
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0
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1.1k
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Picard ExtractIlluminaBarcodes: BARCODE-FILE
picard
4.6 years ago
user31888 • 60
0
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5
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1.2k
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Rna-Seq alternative splicing analysis under limited conditions: possible?
alternative splicing
5.0 years ago
user31888 • 60 • updated 4.8 years ago
Sean Davis 25k
0
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1
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2.1k
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Comment: C: Doc/tutorial UCSC MySQL
4.8 years ago
user31888 • 60
0
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1
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2.1k
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Comment: C: Doc/tutorial UCSC MySQL
4.8 years ago
user31888 • 60
5
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5
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2.1k
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Doc/tutorial UCSC MySQL
UCSC genome browser mysql doc
4.8 years ago
user31888 • 60 • updated 4.8 years ago
Alex Reynolds 28k
0
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0
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961
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Retrieving gene name from its localisation in a .gff3 annotation file.
gene annotation UCSC
4.9 years ago
user31888 • 60
0
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0
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2.1k
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GAGE pathway analysis (R/Bioconductor): summarizeOverlaps error
R Bioconductor GAGE RNA-Seq
5.0 years ago
user31888 • 60
0
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1
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1.2k
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Comment: C: Rna-Seq alternative splicing analysis under limited conditions: possible?
5.0 years ago
user31888 • 60
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