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About
user31888 • 60
Status:
New
Handle:
@user3188821820
Reputation:
60
Joined:
20 months ago
Last seen:
22 months ago
Location:
United States
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comments
0
Votes
1
Reply
247
Views
Comment:
C: Divergent number of replicates between FastQC and samtools
21 months ago
user31888
• 60
1
Vote
1
Reply
247
Views
Comment:
C: Divergent number of replicates between FastQC and samtools
21 months ago
user31888
• 60
9
Votes
8
Replies
247
Views
Divergent number of replicates between FastQC and samtools
fastqc
STAR
samtools
21 months ago
user31888
• 60
• updated 21 months ago
i.sudbery
4.7k
0
Votes
0
Replies
247
Views
Comment:
C: Divergent number of replicates between FastQC and samtools
21 months ago
user31888
• 60
0
Votes
0
Replies
156
Views
Comment:
C: Normalisation of reference dataset for scRNA cell type annotation
22 months ago
user31888
• 60
0
Votes
1
Reply
156
Views
Comment:
C: Normalisation of reference dataset for scRNA cell type annotation
22 months ago
user31888
• 60
0
Votes
4
Replies
156
Views
Normalisation of reference dataset for scRNA cell type annotation
scRNA
scmap
cell type
Human Primary Cell Atlas
22 months ago
user31888
• 60
2
Votes
10
Replies
302
Views
Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
single cell
demultiplexing
23 months ago
user31888
• 60
0
Votes
1
Reply
302
Views
Comment:
C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
23 months ago
user31888
• 60
0
Votes
1
Reply
302
Views
Comment:
C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
23 months ago
user31888
• 60
0
Votes
0
Replies
302
Views
Comment:
C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
23 months ago
user31888
• 60
0
Votes
0
Replies
302
Views
Comment:
C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
23 months ago
user31888
• 60
0
Votes
0
Replies
405
Views
Answer:
A: PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA dataset
23 months ago
user31888
• 60
0
Votes
0
Replies
376
Views
Comment:
C: What batch correction was applied to pan-Cancer mRNA expression data?
2.1 years ago
user31888
• 60
0
Votes
1
Reply
376
Views
Comment:
C: What batch correction was applied to pan-Cancer mRNA expression data?
2.1 years ago
user31888
• 60
5
Votes
4
Replies
376
Views
What batch correction was applied to pan-Cancer mRNA expression data?
TCGA
pan-Cancer Atlas
mRNA
normalisation
2.1 years ago
user31888
• 60
• updated 2.1 years ago
i.sudbery
4.7k
0
Votes
1
Reply
678
Views
Comment:
C: How to normalize median-center log-transform an expression matrix
2.2 years ago
user31888
• 60
1
Vote
3
Replies
678
Views
How to normalize median-center log-transform an expression matrix
R
RNA-Seq
2.2 years ago
user31888
• 60
0
Votes
1
Reply
661
Views
Comment:
C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
2.6 years ago
user31888
• 60
0
Votes
1
Reply
661
Views
Comment:
C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
2.6 years ago
user31888
• 60
3
Votes
5
Replies
661
Views
Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
TCGA
TCGAbiolinks
GenomicDataCommons
2.6 years ago
user31888
• 60
0
Votes
0
Replies
479
Views
Comment:
C: Convert GDCResults object (nested lists) to a human readable data frame
2.6 years ago
user31888
• 60
0
Votes
0
Replies
479
Views
Comment:
C: Convert GDCResults object (nested lists) to a human readable data frame
2.6 years ago
user31888
• 60
0
Votes
2
Replies
479
Views
Comment:
C: Convert GDCResults object (nested lists) to a human readable data frame
2.6 years ago
user31888
• 60
0
Votes
1
Reply
479
Views
Comment:
C: Convert GDCResults object (nested lists) to a human readable data frame
2.6 years ago
user31888
• 60
0
Votes
7
Replies
479
Views
Convert GDCResults object (nested lists) to a human readable data frame
GenomicDataCommon
R
list
data frame
2.6 years ago
user31888
• 60
0
Votes
0
Replies
473
Views
Comment:
C: featureCount vs GENCODE gene lengths
2.6 years ago
user31888
• 60
3
Votes
4
Replies
473
Views
featureCount vs GENCODE gene lengths
featureCount
GENCODE
2.6 years ago
user31888
• 60
• updated 2.6 years ago
Emily_Ensembl
18k
0
Votes
0
Replies
473
Views
Comment:
C: featureCount vs GENCODE gene lengths
2.6 years ago
user31888
• 60
0
Votes
0
Replies
2.4k
Views
Comment:
C: Get gene length with R
2.7 years ago
user31888
• 60
0
Votes
1
Reply
2.4k
Views
Comment:
C: Get gene length with R
2.7 years ago
user31888
• 60
0
Votes
1
Reply
2.4k
Views
Comment:
C: Get gene length with R
2.7 years ago
user31888
• 60
2
Votes
7
Replies
2.4k
Views
Get gene length with R
R
2.7 years ago
user31888
• 60
0
Votes
1
Reply
1.7k
Views
Comment:
C: Normalization scaling factors: formula for applying them to raw counts
2.8 years ago
user31888
• 60
0
Votes
1
Reply
1.9k
Views
strand bias filtering with bcftools
bcftools
samtools
Phred
3.9 years ago
user31888
• 60
• updated 3.1 years ago
Kevin Blighe
43k
0
Votes
1
Reply
1.7k
Views
Comment:
C: Alternative splicing: explanation about delta psi values
3.4 years ago
user31888
• 60
0
Votes
4
Replies
1.7k
Views
Alternative splicing: explanation about delta psi values
MISO
alternative splicing
psi
3.4 years ago
user31888
• 60
• updated 3.4 years ago
kristoffer.vittingseerup
♦ 1.8k
0
Votes
1
Reply
1.0k
Views
Precision of loss of heterozygosity detection with Sanger sequencing vs copy number analysis
LOH
CNV
Sanger Sequencing
3.4 years ago
user31888
• 60
• updated 3.4 years ago
Eric T.
♦ 2.4k
0
Votes
2
Replies
734
Views
Comment:
C: Program to validate NGS variants from Sanger sequencing
3.4 years ago
user31888
• 60
0
Votes
4
Replies
734
Views
Program to validate NGS variants from Sanger sequencing
NGS
Sanger
Validation
3.4 years ago
user31888
• 60
0
Votes
1
Reply
647
Views
Comment:
C: Does a database of pathogenic transcripts exist?
3.6 years ago
user31888
• 60
0
Votes
0
Replies
647
Views
Comment:
C: Does a database of pathogenic transcripts exist?
3.6 years ago
user31888
• 60
4
Votes
7
Replies
647
Views
Does a database of pathogenic transcripts exist?
RNA-Seq
database
3.6 years ago
user31888
• 60
• updated 3.6 years ago
h.mon
25k
0
Votes
1
Reply
730
Views
Comment:
C: Inverted base and amino acid change in Annovar
3.6 years ago
user31888
• 60
0
Votes
1
Reply
730
Views
Comment:
C: Inverted base and amino acid change in Annovar
3.6 years ago
user31888
• 60
0
Votes
5
Replies
730
Views
Inverted base and amino acid change in Annovar
annovar
3.6 years ago
user31888
• 60
0
Votes
0
Replies
3.6k
Views
Comment:
C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
4.0 years ago
user31888
• 60
0
Votes
0
Replies
3.6k
Views
Comment:
C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
4.0 years ago
user31888
• 60
3
Votes
9
Replies
3.6k
Views
R: converting Ensembl row names to Symbol ID outputs missing values in 'row.names' are not allowed
R
4.0 years ago
user31888
• 60
• updated 4.0 years ago
Liun
• 30
0
Votes
0
Replies
3.6k
Views
Comment:
C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
4.0 years ago
user31888
• 60
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