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user31888 • 60
Status: New
Handle: @user3188821820
Reputation: 60
Joined: 20 months ago
Last seen: 22 months ago
Location: United States

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Comment: C: Divergent number of replicates between FastQC and samtools
21 months ago
user31888 • 60
1
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1
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247
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Comment: C: Divergent number of replicates between FastQC and samtools
21 months ago
user31888 • 60
9
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8
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247
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Divergent number of replicates between FastQC and samtools
fastqc STAR samtools
21 months ago
user31888 • 60 • updated 21 months ago
i.sudbery 4.7k
0
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0
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247
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Comment: C: Divergent number of replicates between FastQC and samtools
21 months ago
user31888 • 60
0
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0
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156
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Comment: C: Normalisation of reference dataset for scRNA cell type annotation
22 months ago
user31888 • 60
0
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1
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156
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Comment: C: Normalisation of reference dataset for scRNA cell type annotation
22 months ago
user31888 • 60
0
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4
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156
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Normalisation of reference dataset for scRNA cell type annotation
scRNA scmap cell type Human Primary Cell Atlas
22 months ago
user31888 • 60
2
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10
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302
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Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
single cell demultiplexing
23 months ago
user31888 • 60
0
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1
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302
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Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
23 months ago
user31888 • 60
0
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1
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302
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Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
23 months ago
user31888 • 60
0
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0
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302
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Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
23 months ago
user31888 • 60
0
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0
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302
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Comment: C: Demultiplexing single cell QIAseq UPX 3 Transcriptome Kits fastq files
23 months ago
user31888 • 60
0
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0
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405
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Answer: A: PanCanAtlas EBPlusPlus-corrected RNA-seq TCGA dataset
23 months ago
user31888 • 60
0
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0
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376
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Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
2.1 years ago
user31888 • 60
0
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1
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376
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Comment: C: What batch correction was applied to pan-Cancer mRNA expression data?
2.1 years ago
user31888 • 60
5
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4
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376
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What batch correction was applied to pan-Cancer mRNA expression data?
TCGA pan-Cancer Atlas mRNA normalisation
2.1 years ago
user31888 • 60 • updated 2.1 years ago
i.sudbery 4.7k
0
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1
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678
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Comment: C: How to normalize median-center log-transform an expression matrix
2.2 years ago
user31888 • 60
1
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3
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678
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How to normalize median-center log-transform an expression matrix
R RNA-Seq
2.2 years ago
user31888 • 60
0
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1
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661
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Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
2.6 years ago
user31888 • 60
0
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1
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661
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Comment: C: Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down
2.6 years ago
user31888 • 60
3
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5
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661
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Retrieve TCGA file ID and associated barcode with TCGAbiolinks: "GDC server down"
TCGA TCGAbiolinks GenomicDataCommons
2.6 years ago
user31888 • 60
0
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0
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479
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Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
2.6 years ago
user31888 • 60
0
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0
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479
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Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
2.6 years ago
user31888 • 60
0
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2
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479
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Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
2.6 years ago
user31888 • 60
0
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1
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479
Views
Comment: C: Convert GDCResults object (nested lists) to a human readable data frame
2.6 years ago
user31888 • 60
0
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7
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479
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Convert GDCResults object (nested lists) to a human readable data frame
GenomicDataCommon R list data frame
2.6 years ago
user31888 • 60
0
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0
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473
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Comment: C: featureCount vs GENCODE gene lengths
2.6 years ago
user31888 • 60
3
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4
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473
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featureCount vs GENCODE gene lengths
featureCount GENCODE
2.6 years ago
user31888 • 60 • updated 2.6 years ago
Emily_Ensembl 18k
0
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0
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473
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Comment: C: featureCount vs GENCODE gene lengths
2.6 years ago
user31888 • 60
0
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0
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2.4k
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Comment: C: Get gene length with R
2.7 years ago
user31888 • 60
0
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1
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2.4k
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Comment: C: Get gene length with R
2.7 years ago
user31888 • 60
0
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1
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2.4k
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Comment: C: Get gene length with R
2.7 years ago
user31888 • 60
2
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7
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2.4k
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Get gene length with R
R
2.7 years ago
user31888 • 60
0
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1
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1.7k
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Comment: C: Normalization scaling factors: formula for applying them to raw counts
2.8 years ago
user31888 • 60
0
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1
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1.9k
Views
strand bias filtering with bcftools
bcftools samtools Phred
3.9 years ago
user31888 • 60 • updated 3.1 years ago
Kevin Blighe 43k
0
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1
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1.7k
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Comment: C: Alternative splicing: explanation about delta psi values
3.4 years ago
user31888 • 60
0
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4
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1.7k
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Alternative splicing: explanation about delta psi values
MISO alternative splicing psi
3.4 years ago
user31888 • 60 • updated 3.4 years ago
kristoffer.vittingseerup ♦ 1.8k
0
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1
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1.0k
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Precision of loss of heterozygosity detection with Sanger sequencing vs copy number analysis
LOH CNV Sanger Sequencing
3.4 years ago
user31888 • 60 • updated 3.4 years ago
Eric T. ♦ 2.4k
0
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2
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734
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Comment: C: Program to validate NGS variants from Sanger sequencing
3.4 years ago
user31888 • 60
0
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4
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734
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Program to validate NGS variants from Sanger sequencing
NGS Sanger Validation
3.4 years ago
user31888 • 60
0
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1
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647
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Comment: C: Does a database of pathogenic transcripts exist?
3.6 years ago
user31888 • 60
0
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0
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647
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Comment: C: Does a database of pathogenic transcripts exist?
3.6 years ago
user31888 • 60
4
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7
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647
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Does a database of pathogenic transcripts exist?
RNA-Seq database
3.6 years ago
user31888 • 60 • updated 3.6 years ago
h.mon 25k
0
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1
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730
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Comment: C: Inverted base and amino acid change in Annovar
3.6 years ago
user31888 • 60
0
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1
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730
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Comment: C: Inverted base and amino acid change in Annovar
3.6 years ago
user31888 • 60
0
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5
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730
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Inverted base and amino acid change in Annovar
annovar
3.6 years ago
user31888 • 60
0
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0
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3.6k
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Comment: C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
4.0 years ago
user31888 • 60
0
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0
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3.6k
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Comment: C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
4.0 years ago
user31888 • 60
3
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9
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3.6k
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R: converting Ensembl row names to Symbol ID outputs missing values in 'row.names' are not allowed
R
4.0 years ago
user31888 • 60 • updated 4.0 years ago
Liun • 30
0
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0
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3.6k
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Comment: C: R: converting Ensembl row names to Symbol ID outputs missing values in 'row.nam
4.0 years ago
user31888 • 60
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