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H.Hasani • 730
Status: New
Handle: @H.Hasani21782
Reputation: 730
Joined: 21 months ago
Last seen: 21 months ago
Location: Freiburg, Germany

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101
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Answer: A: Mutated gene based pathway enrichment
21 months ago
H.Hasani • 730
1
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195
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Comment: C: How to run several one-way ANOVAs in R using on different categories?
21 months ago
H.Hasani • 730
3
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300
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Answer: A: Getting this specific information from gene- annotation enrichment analysis
21 months ago
H.Hasani • 730
3
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197
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Answer: A: venndiagram `Error in draw.quintuple.venn`?
23 months ago
H.Hasani • 730
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564
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Comment: C: Create snakefile based on R script
2.2 years ago
H.Hasani • 730
2
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467
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Answer: A: Lolliplot graph for mutations
2.3 years ago
H.Hasani • 730
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2.6k
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Answer: A: download tumor and normal data from TCGA
2.3 years ago
H.Hasani • 730
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218
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How to get AF in TCGA MutSigNozzleReport2CV Level_4
SNP tcga alele fraction
2.3 years ago
H.Hasani • 730
2
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1
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672
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Answer: A: Bioinformatics terms that might be confusing for beginners
2.4 years ago
H.Hasani • 730
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3.3k
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Comment: C: Interpretation of TCGA CNV data
2.6 years ago
H.Hasani • 730
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1.9k
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Comment: C: The outputs of GISTIC
2.6 years ago
H.Hasani • 730
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1.6k
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Comment: C: error for barplot in enrichGO(clusterProfiler)
2.6 years ago
H.Hasani • 730
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1
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2.7k
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Comment: C: Genotyping, genotype calling or SNP calling?
2.7 years ago
H.Hasani • 730
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2
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634
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TCGA raw data (Level 1)
RNA-Seq SNP copy number
2.7 years ago
H.Hasani • 730
3
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5
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2.6k
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Bowtie2 error with single end mapping
ChIP-Seq single-end read mapping
3.9 years ago
H.Hasani • 730 • updated 2.8 years ago
Lakshman Teja • 30
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585
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Comment: C: Detection of SNPs
2.8 years ago
H.Hasani • 730
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585
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Answer: A: Detection of SNPs
2.8 years ago
H.Hasani • 730
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2.1k
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Comment: C: use firehose_get to download TCGA data
2.8 years ago
H.Hasani • 730
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1
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2.1k
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Comment: C: use firehose_get to download TCGA data
2.8 years ago
H.Hasani • 730
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663
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Comment: C: COSMIC paired normal cell lines for somatic mutation calling
3.3 years ago
H.Hasani • 730
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6.9k
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Answer: A: In simple words - what is k-mer??
3.3 years ago
H.Hasani • 730
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3
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1.7k
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How to Specify Genome Build in MutSigCV Input ?
SNP gene genome Assembly
5.3 years ago
H.Hasani • 730 • updated 3.3 years ago
jz314 • 0
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1
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785
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Comment: C: Recognizing an organism which is combination of other organisms
3.7 years ago
H.Hasani • 730
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2.1k
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Comment: C: samtools view region
3.7 years ago
H.Hasani • 730
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673
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Answer: A: functional variant discovery after GATK variant calling
3.7 years ago
H.Hasani • 730
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1
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2.1k
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Comment: C: samtools view region
3.7 years ago
H.Hasani • 730
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1
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997
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Comment: C: TCGA raw counts DexSeq
3.7 years ago
H.Hasani • 730
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1
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2.1k
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Comment: C: samtools view region
3.7 years ago
H.Hasani • 730
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620
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Answer: A: Broad rules of thumb on # of variations
3.7 years ago
H.Hasani • 730
1
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1
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2.1k
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Answer: A: samtools view region
3.7 years ago
H.Hasani • 730
1
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1
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997
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Answer: A: TCGA raw counts DexSeq
3.7 years ago
H.Hasani • 730
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3.3k
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Comment: C: GEO datasets: Raw data is available on Series record
3.7 years ago
H.Hasani • 730
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1
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3.3k
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Comment: C: GEO datasets: Raw data is available on Series record
3.7 years ago
H.Hasani • 730
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2
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1.4k
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Comment: C: Interpreting unusual-looking mean-variance plot from EdgeR
3.8 years ago
H.Hasani • 730
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1.1k
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Comment: C: clusterProfiler (KEGG Enrichment Analysis) error
3.8 years ago
H.Hasani • 730
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2.6k
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Comment: C: Bowtie2 error with single end mapping
3.9 years ago
H.Hasani • 730
3
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1
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679
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Comment: C: How to predict mutation without using variant callers like GATK, Mutect?
4.0 years ago
H.Hasani • 730
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464
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Comment: C: variant filtration criteria
4.0 years ago
H.Hasani • 730
1
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1
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16k
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Comment: C: Duplicated Reads In Rna-Seq Experiment
4.0 years ago
H.Hasani • 730
1
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0
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786
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Comment: C: SNP Data Quality control
4.0 years ago
H.Hasani • 730
0
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1
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967
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Benchmark papers for Chip genomic enrichment
ChIP-Seq gene significant tags
4.0 years ago
H.Hasani • 730 • updated 4.0 years ago
geek_y 9.7k
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3.2k
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Comment: C: Chip-Seq Enrichment Profile Significance?
4.0 years ago
H.Hasani • 730
8
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11
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1.5k
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Visualizing mutations burden vs. gene expression
SNP gene R rna-seq
4.7 years ago
H.Hasani • 730 • updated 4.3 years ago
Biostar 20
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1
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830
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Comment: C: chi squared test for comparing two groups of proteins
4.4 years ago
H.Hasani • 730
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1.4k
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Comment: C: Overrepresented sequence in RNA-seq only in R2
4.4 years ago
H.Hasani • 730
2
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1.0k
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Answer: A: how to replace certain column name based on another file
4.4 years ago
H.Hasani • 730
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1
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1.2k
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Comment: C: Statistical test to compare expression change in a subgroup of genes versus all
4.4 years ago
H.Hasani • 730
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1
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1.2k
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Comment: C: Statistical test to compare expression change in a subgroup of genes versus all
4.4 years ago
H.Hasani • 730
0
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1.2k
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Comment: C: How to map by bwa with 50 mismatches?
4.4 years ago
H.Hasani • 730
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1.3k
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Comment: C: csv into genome browser
4.4 years ago
H.Hasani • 730
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