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ALchEmiXt ♦ 1.9k
Status: New
Handle: @ALchEmiXt2147
Reputation: 1870
Email: a******@wur.nl
Joined: 16 months ago
Twitter: a_bossers
Google Scholar: 5W_qAaAAAAAJ
Last seen: 2.6 years ago
Location: The Netherlands

Working mainly on multi-Omics approaches using all kinds of OMICS tools, metagenomics, meta-transcriptomics, NGS and bioinformatics.
Linux enthousiast. Preferred languages/platforms: Perl, R, PHP, BASH, Ubuntu, galaxy
Occasionally you can find me on Twitter as well.
CU,
Alex

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11
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13
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3.6k
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Average coverage of de novo SPAdes assembly deviates a lot from theretical coverage
SPAdes Assembly de novo bacterial species
5.1 years ago
ALchEmiXt ♦ 1.9k • updated 2.3 years ago
Biostar 20
1
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0
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781
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Answer: A: Can we assembly the draft sequences that is assembled by another genome assemble
3.6 years ago
ALchEmiXt ♦ 1.9k
0
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687
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Answer: A: phylip format from Mummer
3.6 years ago
ALchEmiXt ♦ 1.9k
0
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0
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672
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Comment: C: How to calculate the mass of whole protiens and sub regions?
3.6 years ago
ALchEmiXt ♦ 1.9k
0
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1
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978
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Answer: A: Metagenome/metatranscriptome db with blast option?
3.6 years ago
ALchEmiXt ♦ 1.9k
2
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0
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660
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Comment: C: How can a MSA be useful for sub-cellular location identification?
3.6 years ago
ALchEmiXt ♦ 1.9k
0
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1
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660
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Answer: A: How can a MSA be useful for sub-cellular location identification?
3.6 years ago
ALchEmiXt ♦ 1.9k
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1.0k
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Comment: C: localhost doesn't work
3.6 years ago
ALchEmiXt ♦ 1.9k
1
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1.0k
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Answer: A: localhost doesn't work
3.6 years ago
ALchEmiXt ♦ 1.9k
1
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1.0k
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Answer: A: Pairwise sequence alignment
3.6 years ago
ALchEmiXt ♦ 1.9k
1
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0
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487
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Answer: A: Data bases with proteins and ligands
3.6 years ago
ALchEmiXt ♦ 1.9k
0
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1
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726
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Comment: C: result of cd hit est 2d meaning
3.6 years ago
ALchEmiXt ♦ 1.9k
4
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1
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726
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Answer: A: result of cd hit est 2d meaning
3.6 years ago
ALchEmiXt ♦ 1.9k
3
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0
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1.3k
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Comment: C: Add sequence lengths to headers in a fasta file
3.6 years ago
ALchEmiXt ♦ 1.9k
0
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1
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1.7k
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Comment: C: Converting Uniprot File to a Fasta File in Perl
3.7 years ago
ALchEmiXt ♦ 1.9k
1
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Comment: C: Converting Uniprot File to a Fasta File in Perl
3.7 years ago
ALchEmiXt ♦ 1.9k
0
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1
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1.2k
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Comment: C: dedupe from BBMAP suite woes with memory and stdout
3.7 years ago
ALchEmiXt ♦ 1.9k
0
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1
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1.2k
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Comment: C: dedupe from BBMAP suite woes with memory and stdout
3.7 years ago
ALchEmiXt ♦ 1.9k
4
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9
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1.2k
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dedupe from BBMAP suite woes with memory and stdout
bbmap dedupe linux duplicates fastq
3.7 years ago
ALchEmiXt ♦ 1.9k • updated 3.7 years ago
Brian Bushnell 16k
3
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1
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1.7k
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Answer: A: Converting Uniprot File to a Fasta File in Perl
3.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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2.9k
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Comment: C: NCBI: batch upload WGS sequences linked to bioproject/biosample
3.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1.4k
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Comment: C: samtools mpileup not calling small (6 base) INSERT
4.1 years ago
ALchEmiXt ♦ 1.9k
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1.4k
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Comment: C: samtools mpileup not calling small (6 base) INSERT
4.1 years ago
ALchEmiXt ♦ 1.9k
0
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5
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1.4k
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samtools mpileup not calling small (6 base) INSERT
samtools mpileup INDEL prokaryote vcf
4.4 years ago
ALchEmiXt ♦ 1.9k • updated 4.1 years ago
sb1 • 0
0
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2.6k
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Comment: C: How can I run All-v-all BLAST
4.3 years ago
ALchEmiXt ♦ 1.9k
2
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1
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2.6k
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Answer: A: How can I run All-v-all BLAST
4.3 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1.4k
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Comment: C: samtools mpileup not calling small (6 base) INSERT
4.3 years ago
ALchEmiXt ♦ 1.9k
16
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7
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3.6k
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Identification Of Significant Differences Between Phylogentic Trees Using Distance Matrix
phylogenetics
7.9 years ago
ALchEmiXt ♦ 1.9k • updated 4.3 years ago
Biostar 20
0
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0
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1.4k
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Comment: C: Percentage of similarity between two contigs files
4.3 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1.8k
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Comment: C: Remove duplicate protein sequences having different fasta identifiers
4.3 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1000
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Answer: A: how to find motif across few protein sequences ?
4.3 years ago
ALchEmiXt ♦ 1.9k
0
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0
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675
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Answer: A: identify-predict peptides targeted by antibody
4.3 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1.3k
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Answer: A: SNP calling for correcting errors ?
4.4 years ago
ALchEmiXt ♦ 1.9k
0
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0
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800
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Answer: A: Automate peptide lookup / matching in human plasma proteome (http://www.peptidea
4.7 years ago
ALchEmiXt ♦ 1.9k
0
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1.3k
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Answer: A: Is there any journal where you can post small programs to solve very specific ta
4.7 years ago
ALchEmiXt ♦ 1.9k
1
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1
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1.4k
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Answer: A: Percentage of similarity between two contigs files
4.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1.6k
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Answer: A: single copy genes for phylogenetic tree after orthomcl tool
4.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1.5k
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Answer: A: Speeding up NUCmer for de novo contig to reference alignment
4.7 years ago
ALchEmiXt ♦ 1.9k
2
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2
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3.6k
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Answer: A: Average coverage of de novo SPAdes assembly deviates a lot from theretical cover
5.0 years ago
ALchEmiXt ♦ 1.9k
0
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0
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3.6k
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Comment: C: Average coverage of de novo SPAdes assembly deviates a lot from theretical cover
5.0 years ago
ALchEmiXt ♦ 1.9k
0
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0
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3.6k
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Comment: C: Average coverage of de novo SPAdes assembly deviates a lot from theretical cover
5.0 years ago
ALchEmiXt ♦ 1.9k
0
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1
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3.6k
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Comment: C: Average coverage of de novo SPAdes assembly deviates a lot from theretical cover
5.1 years ago
ALchEmiXt ♦ 1.9k
0
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1
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3.6k
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Comment: C: Average coverage of de novo SPAdes assembly deviates a lot from theretical cover
5.1 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1.0k
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Comment: C: Mapping reads on small reference genomes
5.1 years ago
ALchEmiXt ♦ 1.9k
0
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1
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2.9k
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Comment: C: NCBI: batch upload WGS sequences linked to bioproject/biosample
5.9 years ago
ALchEmiXt ♦ 1.9k
2
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3
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2.9k
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NCBI: batch upload WGS sequences linked to bioproject/biosample
ncbi submission WGS biosample bioproject
5.9 years ago
ALchEmiXt ♦ 1.9k
0
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1
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2.1k
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Answer: A: Kmergenie: R script cannot output png files
6.1 years ago
ALchEmiXt ♦ 1.9k
6
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5
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2.6k
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Ncbi Genome Sub-Species Trees
genome phylogenetics ncbi
8.9 years ago
ALchEmiXt ♦ 1.9k • updated 6.1 years ago
Biostar 20
0
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1
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8.5k
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Comment: C: Software For Analysis Of Bacterial Genomics.
7.8 years ago
ALchEmiXt ♦ 1.9k
2
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1
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8.5k
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Answer: A: Software For Analysis Of Bacterial Genomics.
7.8 years ago
ALchEmiXt ♦ 1.9k
1
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2.3k
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Answer: A: Phylogenetic Tree
7.8 years ago
ALchEmiXt ♦ 1.9k
0
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3.6k
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Comment: C: Identification Of Significant Differences Between Phylogentic Trees Using Distan
7.9 years ago
ALchEmiXt ♦ 1.9k
0
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0
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3.6k
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Comment: C: Identification Of Significant Differences Between Phylogentic Trees Using Distan
7.9 years ago
ALchEmiXt ♦ 1.9k
0
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0
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2.1k
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Comment: C: Double Restriction, Fragment Generation
8.3 years ago
ALchEmiXt ♦ 1.9k
0
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0
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2.1k
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Answer: A: Double Restriction, Fragment Generation
8.4 years ago
ALchEmiXt ♦ 1.9k
1
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0
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12k
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Comment: C: How Does A Bioinformatics Scientist Document His/Her Work?
8.4 years ago
ALchEmiXt ♦ 1.9k
2
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0
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12k
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Answer: A: How Does A Bioinformatics Scientist Document His/Her Work?
8.4 years ago
ALchEmiXt ♦ 1.9k
1
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0
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3.5k
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Answer: A: How Do Researchers Choose A Reference Genome For A Novel Bacterial Strain Assemb
8.5 years ago
ALchEmiXt ♦ 1.9k
0
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0
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2.1k
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Comment: C: Best Way To Close Gaps In Genome With Single Reads
8.5 years ago
ALchEmiXt ♦ 1.9k
3
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2
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2.1k
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Answer: A: Best Way To Close Gaps In Genome With Single Reads
8.5 years ago
ALchEmiXt ♦ 1.9k
1
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0
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1.4k
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Answer: A: Has Anyone Tried Seqman Ngen?
8.5 years ago
ALchEmiXt ♦ 1.9k
1
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0
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2.7k
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Answer: A: Metagenomics/De Novo Sequencing
8.6 years ago
ALchEmiXt ♦ 1.9k
0
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0
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2.6k
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Comment: C: 454 Order Of Contigs Assembly And Mapping
8.6 years ago
ALchEmiXt ♦ 1.9k
0
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0
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2.6k
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Comment: C: 454 Order Of Contigs Assembly And Mapping
8.6 years ago
ALchEmiXt ♦ 1.9k
1
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2
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2.6k
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Answer: A: 454 Order Of Contigs Assembly And Mapping
8.6 years ago
ALchEmiXt ♦ 1.9k
3
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1
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9.1k
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Answer: A: Mapping Reads Back To Assembly Contigs
8.6 years ago
ALchEmiXt ♦ 1.9k
0
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0
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4.0k
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Comment: C: Pairwise Genome Alignment Of Two ~30Mb Genomes To Give A Genetic Distance Estima
8.6 years ago
ALchEmiXt ♦ 1.9k
3
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1
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4.0k
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Answer: A: Pairwise Genome Alignment Of Two ~30Mb Genomes To Give A Genetic Distance Estima
8.6 years ago
ALchEmiXt ♦ 1.9k
0
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0
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4.3k
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Comment: C: Where Should I Apply To Graduate School For Bioinformatics?
8.6 years ago
ALchEmiXt ♦ 1.9k
0
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0
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26k
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Answer: A: Opening A Fasta File In Windows
8.6 years ago
ALchEmiXt ♦ 1.9k
0
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0
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2.7k
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Comment: C: Predictability Of Regulatory States In New Cell Lines Or Tissues From Existing E
8.6 years ago
ALchEmiXt ♦ 1.9k
3
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0
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42k
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Answer: A: What Tools/Libraries Do You Use To Visualize Genomic Feature Data?
8.6 years ago
ALchEmiXt ♦ 1.9k
1
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0
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1.8k
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Answer: A: Quantifying Sequence Divergence In An Alignment
8.6 years ago
ALchEmiXt ♦ 1.9k
1
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0
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5.7k
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Answer: A: Add Sequences To A List From A Complex Fasta File In Python
8.6 years ago
ALchEmiXt ♦ 1.9k
0
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0
Replies
2.4k
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Answer: A: Abyss Single End
8.6 years ago
ALchEmiXt ♦ 1.9k
8
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1
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7.8k
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Answer: A: How To Draw Genome Features Along Chromosome
8.6 years ago
ALchEmiXt ♦ 1.9k
0
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2
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2.7k
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Answer: A: Predictability Of Regulatory States In New Cell Lines Or Tissues From Existing E
8.6 years ago
ALchEmiXt ♦ 1.9k
2
Votes
1
Reply
18k
Views
Answer: A: Online Bioinformatics Training Options
8.6 years ago
ALchEmiXt ♦ 1.9k
2
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1
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7.3k
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Answer: A: Choosing Window Size (Sliding Window Approach) During Cnv Analysis By Readdepth
8.6 years ago
ALchEmiXt ♦ 1.9k
1
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0
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1.1k
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Answer: A: Read Coverage On Structure
8.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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13k
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Comment: C: Bioinformatics "Cheat Sheet"
8.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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14k
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Comment: C: How Can I Calculate The Depth Of The Sequencing?
8.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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14k
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Comment: C: How Can I Calculate The Depth Of The Sequencing?
8.7 years ago
ALchEmiXt ♦ 1.9k
1
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0
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831
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Answer: A: Titanium Xl+ V/S Titanium Xlr70
8.7 years ago
ALchEmiXt ♦ 1.9k
1
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2
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3.2k
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Answer: A: Phylogenetic Tree Of Fragments Of The Same Protein (From A Metagenome)
8.7 years ago
ALchEmiXt ♦ 1.9k
1
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1
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8.5k
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Comment: C: Collapse Probes For Same Gene
8.7 years ago
ALchEmiXt ♦ 1.9k
2
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2
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8.5k
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Answer: A: Collapse Probes For Same Gene
8.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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23k
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Comment: C: Linux Distros Best Suited For Bioinformatics?
8.7 years ago
ALchEmiXt ♦ 1.9k
6
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2
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23k
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Answer: A: Linux Distros Best Suited For Bioinformatics?
8.7 years ago
ALchEmiXt ♦ 1.9k
2
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0
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1.6k
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Comment: C: Align Multikb Contigs Of A Mammalian Genome Against List Of Mammalian Genome Ass
8.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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1.6k
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Comment: C: Align Multikb Contigs Of A Mammalian Genome Against List Of Mammalian Genome Ass
8.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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3.9k
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Comment: C: Phylogenetic Tools Of Large Data Sets That Use Multicore Processors?
8.7 years ago
ALchEmiXt ♦ 1.9k
2
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1
Reply
4.0k
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Answer: A: Ortholog Detection Tool
8.7 years ago
ALchEmiXt ♦ 1.9k
5
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1
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6.0k
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Answer: A: How To Calculate Sensitivity/Selectivity Of An Algorithm That Returns Locations
8.7 years ago
ALchEmiXt ♦ 1.9k
0
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0
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3.5k
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Comment: C: Example Datasets For Illumina Miseq 2 X 250Bp?
8.8 years ago
ALchEmiXt ♦ 1.9k
0
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0
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4.5k
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Comment: C: Show Progress (Bar?) For Blast+ Query
8.8 years ago
ALchEmiXt ♦ 1.9k
1
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1
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4.5k
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Answer: A: Show Progress (Bar?) For Blast+ Query
8.8 years ago
ALchEmiXt ♦ 1.9k
0
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2
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3.8k
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Answer: A: Interpro Enrichment - Any Organism
8.8 years ago
ALchEmiXt ♦ 1.9k
0
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0
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4.7k
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Comment: C: Is Blast+ Running As Fast As It Could ?
8.8 years ago
ALchEmiXt ♦ 1.9k
0
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0
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7.7k
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Answer: A: Convert Fas/Qual Into Fastq?
8.8 years ago
ALchEmiXt ♦ 1.9k
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