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Comment:
Comment: Deep Sequencing vs Shallow Sequencing but repeated several times
5 weeks ago by
d-cameron
★ 2.9k
0
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1
reply
296
views
Answer:
Answer: I want to add a human gene sequence to a mouse reference genome
12 weeks ago by
d-cameron
★ 2.9k
1
vote
0
replies
675
views
Comment:
Comment: How to whole genome assemble when I have three references
3 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
675
views
Comment:
Comment: How to whole genome assemble when I have three references
3 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
675
views
Comment:
Comment: How to whole genome assemble when I have three references
3 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
675
views
Comment:
Comment: How to whole genome assemble when I have three references
3 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
468
views
Answer:
Answer: How to find positions with higher depth relative to their surroundings
6 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
839
views
Answer:
Answer: Importance of Data Structures for Bioinformatics?
6 months ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.4k
views
Answer:
Answer: Converting custom VCF to standard VCF
6 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
649
views
Answer:
Answer: CNV benchmarking
7 months ago by
d-cameron
★ 2.9k
3
votes
1
reply
3.9k
views
Answer:
Answer: Is there a file format better suited for the era of pangenomics than the .vcf? W
9 months ago by
d-cameron
★ 2.9k
3
votes
0
replies
408
views
Answer:
Answer: unmapped reads
10 months ago by
d-cameron
★ 2.9k
2
votes
1
reply
1.1k
views
Answer:
Answer: samtools index: Numerical result out of range for both .bai and .csi
16 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.5k
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Comment:
Comment: paired end mapping with one end being unique and the other end multiple
17 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.6k
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Comment:
Comment: Unaligned Reads From Bowtie2
18 months ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.6k
views
Answer:
Answer: Unaligned Reads From Bowtie2
18 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: Extracting only soft/hard clipped reads from a bam file
18 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
1.3k
views
Answer:
Answer: Extracting only soft/hard clipped reads from a bam file
18 months ago by
d-cameron
★ 2.9k
2
votes
0
replies
1.1k
views
Answer:
Answer: VCF to human friendly form?
18 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
640
views
Answer:
Answer: Sampling short reads from a library with long reads
19 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
895
views
Comment:
Comment: SV with identical start and end positions
19 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
895
views
Answer:
Answer: SV with identical start and end positions
19 months ago by
d-cameron
★ 2.9k
0
votes
2
replies
895
views
Comment:
Comment: SV with identical start and end positions
19 months ago by
d-cameron
★ 2.9k
5
votes
0
replies
701
views
Answer:
Answer: PC for bioinformatics
19 months ago by
d-cameron
★ 2.9k
1
vote
1
reply
791
views
Answer:
Answer: Distinguishing records for reads in a pair in a SAM file
19 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
2.0k
views
Comment:
Comment: AF = 0.5 in chrX, VCF of a male
19 months ago by
d-cameron
★ 2.9k
1
vote
1
reply
1.3k
views
Answer:
Answer: Circos plot from SV data of WES samples
19 months ago by
d-cameron
★ 2.9k
0
votes
1
reply
2.5k
views
Comment:
Comment: Tabix '[E::get_intv] Failed to parse TBX_VCF' error
20 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
1.0k
views
Answer:
Answer: How to extract fasta subsequences from a multiline fasta file which has very lon
21 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
611
views
Answer:
Answer: What are the biggest sets of individual-level sequence-based variant data?
21 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
781
views
Answer:
Answer: Is it possible to infer whether a patient is with homozygous with the alternativ
22 months ago by
d-cameron
★ 2.9k
2
votes
1
reply
730
views
Answer:
Answer: Unreasonable allele frequency (AF) found in my sample VCF file
22 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
399
views
Comment:
Comment: How to bin how many alignments a read maps
22 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
1.4k
views
Answer:
Answer: computing chromothripsis on cancer genomes
22 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
422
views
Comment:
Comment: Detect a sequence without assembling... and counting number of reads?
22 months ago by
d-cameron
★ 2.9k
3
votes
2
replies
1.5k
views
Comment:
Comment: paired end mapping with one end being unique and the other end multiple
23 months ago by
d-cameron
★ 2.9k
2
votes
0
replies
1.5k
views
Comment:
Comment: paired end mapping with one end being unique and the other end multiple
23 months ago by
d-cameron
★ 2.9k
1
vote
0
replies
714
views
Comment:
Comment: Calling variants after using different read alignment programs
24 months ago by
d-cameron
★ 2.9k
2
votes
1
reply
714
views
Answer:
Answer: Calling variants after using different read alignment programs
24 months ago by
d-cameron
★ 2.9k
0
votes
0
replies
594
views
Answer:
Answer: Tumor phylogeny: WGS or deep WES?
2.0 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
2.0k
views
Comment:
Comment: Are not all duplicated reads removed when applying removal duplicated algorithms
2.0 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
2.0k
views
Answer:
Answer: Are not all duplicated reads removed when applying removal duplicated algorithms
2.0 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
587
views
Answer:
Answer: New VCF Header (schema) Parser---Please Break!!!
2.0 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
1000
views
Answer:
Answer: QUAL in VCF file
2.0 years ago by
d-cameron
★ 2.9k
1
vote
0
replies
792
views
Answer:
Answer: Identifying breakpoints of split reads in SAM files
2.0 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
4.2k
views
Comment:
Comment: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.0 years ago by
d-cameron
★ 2.9k
5
votes
2
replies
4.2k
views
Answer:
Answer: Structural Variants (SV) Manta output interpretation: MantaBND and translocation
2.1 years ago by
d-cameron
★ 2.9k
4
votes
1
reply
1.0k
views
What aren't hg19-hg38 liftOver chains symmetrical?
hg38
hg19
liftover
updated 2.3 years ago by
cathalormond
▴ 30 • written 2.3 years ago by
d-cameron
★ 2.9k
1
vote
1
reply
875
views
Answer:
Answer: BAM - number of mapping positions per read
2.4 years ago by
d-cameron
★ 2.9k
2
votes
0
replies
1.2k
views
Answer:
Answer: which software is the best to look at clinic structural variation in whole genom
2.5 years ago by
d-cameron
★ 2.9k
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