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cpad0112 ♦ 11k
Role: Moderator
Status: New
Handle: @cpad011220673
Reputation: 11270
Email: c*********@gmail.com
Joined: 16 months ago
Last seen: 16 months ago
Location: India

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1
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299
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Comment: C: How to extract a sequence from a multi-fasta file based on its position?
17 months ago
cpad0112 11k
1
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210
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Comment: C: Using awk or sed to edit a column in a gtf file
17 months ago
cpad0112 11k
0
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0
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1.5k
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Comment: C: SNP annotation with R and SnpEff
17 months ago
cpad0112 11k
2
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1
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174
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Comment: C: Arrange multiple column into a single column using R-language
17 months ago
cpad0112 11k
0
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0
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172
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Comment: C: Fasta to FastQ with known qualities
17 months ago
cpad0112 11k
0
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0
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237
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Comment: C: miRNA predictions from large set of long non coding RNA
17 months ago
cpad0112 11k
0
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1
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333
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Comment: C: Looking for experienced bioinformatician: Ahmedabad, Gujarat, India
17 months ago
cpad0112 11k
0
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0
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189
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Comment: C: How to install tcl/tk in R in linux without root permission
17 months ago
cpad0112 11k
0
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0
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197
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Comment: C: How can I compare two reference genome
17 months ago
cpad0112 11k
2
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2
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254
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Comment: C: fastq file format error
17 months ago
cpad0112 11k
1
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1
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330
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Comment: C: Shell script to automate trimmomatic for multiple samples
17 months ago
cpad0112 11k
0
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1
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170
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Comment: C: Text file: combining lines together based on value within certain column
17 months ago
cpad0112 11k
1
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3
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4.7k
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Answer: C: how can i remove duplicated variants from vcf file?
3.3 years ago
cpad0112 11k • updated 17 months ago
RamRS 21k
1
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150
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Comment: C: How can I use read.fasta to load a lot of sequences that are stored in a folder
18 months ago
cpad0112 11k
0
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2.9k
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Comment: C: Calculate length of sequences from fasta file
18 months ago
cpad0112 11k
1
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303
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Comment: C: shell question: How to run multiple paired end alignment in shell?
19 months ago
cpad0112 11k
0
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2
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303
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Comment: C: shell question: How to run multiple paired end alignment in shell?
19 months ago
cpad0112 11k
0
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1
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8.7k
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Comment: C: How to use edgeR to compare multiple conditions to reference condtiion
19 months ago
cpad0112 11k
1
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216
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Comment: C: How to find gene names for csv files created by R
19 months ago
cpad0112 11k
1
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0
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190
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Comment: C: Where and how can I find uncharacterized genes in the human genome?
19 months ago
cpad0112 11k
0
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1
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216
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Comment: C: How to find gene names for csv files created by R
19 months ago
cpad0112 11k
4
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249
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Answer: C: An error occured during fastqc.
19 months ago
cpad0112 11k
0
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0
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329
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Comment: C: Plots in R for bioinformatics analyses
19 months ago
cpad0112 11k
2
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1
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186
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Answer: C: Remove text flanking .. on fasta-headers
19 months ago
cpad0112 11k
0
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0
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209
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Comment: C: Extract fasta files that are not empty from a directory and subdirectories
19 months ago
cpad0112 11k
1
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1
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186
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Comment: C: How to predict non-sense mediated decay from Illumina reads?
19 months ago
cpad0112 11k
0
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0
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231
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Comment: C: Number of read with fastq file name
19 months ago
cpad0112 11k
0
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0
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200
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Comment: C: Best approach to filter variants in a noncoding region?
19 months ago
cpad0112 11k
0
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0
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239
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Comment: C: How to cancat two multiplexed fastq files from GBS with two lanes?
19 months ago
cpad0112 11k
0
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0
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406
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Comment: C: We are seeking a Scientist II/Sr. Scientist in Bioinformatics!
19 months ago
cpad0112 11k
0
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0
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292
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Comment: C: Extract allele count from gnomAD using R
19 months ago
cpad0112 11k
0
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0
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227
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Comment: C: Two genes in one SNP
19 months ago
cpad0112 11k
0
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1
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246
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Comment: C: How to edit fasta header with underscores
19 months ago
cpad0112 11k
1
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1.2k
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Answer: C: Add rsid to LD output from vcftools
19 months ago
cpad0112 11k
1
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0
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298
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Answer: C: How to generate a stripplot like this in Python or R?
19 months ago
cpad0112 11k
0
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215
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Comment: C: How to figure out which adapter has been used
19 months ago
cpad0112 11k
0
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0
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217
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Comment: C: Experimental design RNA-seq
19 months ago
cpad0112 11k
0
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1
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298
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Comment: C: How to generate a stripplot like this in Python or R?
19 months ago
cpad0112 11k
0
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0
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356
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Comment: C: Bam header editing
19 months ago
cpad0112 11k
0
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0
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226
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Comment: C: Extract in specific column with patter file
19 months ago
cpad0112 11k
0
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0
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226
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Comment: C: Extract in specific column with patter file
19 months ago
cpad0112 11k
1
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1
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270
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Comment: C: Splitting string in a column using character
19 months ago
cpad0112 11k
0
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0
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270
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Comment: C: Splitting string in a column using character
19 months ago
cpad0112 11k
0
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0
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312
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Comment: C: Having trouble using wildcard
19 months ago
cpad0112 11k
0
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1
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312
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Comment: C: Having trouble using wildcard
19 months ago
cpad0112 11k
0
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1
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312
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Comment: C: Having trouble using wildcard
19 months ago
cpad0112 11k
0
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0
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205
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Comment: C: Differential expression analysis for time course data
19 months ago
cpad0112 11k
4
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1
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295
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Comment: C: Interesting Bioinformatics Project Ideas (NGS, RNA-Seq)
19 months ago
cpad0112 11k
1
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1
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388
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Answer: C: Converting p value to -log10(p value) to plot the graph
19 months ago
cpad0112 11k
0
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0
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287
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Comment: C: Splitting .vcf file
19 months ago
cpad0112 11k
0
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1
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287
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Comment: C: Splitting .vcf file
19 months ago
cpad0112 11k
2
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0
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325
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Comment: C: How extract the longest overlap?
19 months ago
cpad0112 11k
0
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0
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267
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Comment: C: Creating binary matrix of absence/presence of genes in multiple column lists
19 months ago
cpad0112 11k
1
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0
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407
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Answer: C: How to create a tab delimited file?
20 months ago
cpad0112 11k
0
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0
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276
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Comment: C: Split DNA sequence into dimers
20 months ago
cpad0112 11k
0
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1
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276
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Comment: C: Split DNA sequence into dimers
20 months ago
cpad0112 11k
0
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0
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219
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Comment: C: Find binding sites start and end positions in genome using biophyton
20 months ago
cpad0112 11k
3
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0
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282
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Answer: C: Unable to query specific ensembl ID through biomaRt (R) or mygene (Python)
20 months ago
cpad0112 11k
1
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0
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304
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Answer: C: awk or/and cut command for reformatting sequence header identifiers of fastq fil
20 months ago
cpad0112 11k
0
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0
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558
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Comment: C: collapsing transcript expression to gene-level expression
20 months ago
cpad0112 11k
1
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2
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558
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Comment: C: collapsing transcript expression to gene-level expression
20 months ago
cpad0112 11k
1
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1
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558
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Comment: C: collapsing transcript expression to gene-level expression
20 months ago
cpad0112 11k
1
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1
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558
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Comment: C: Converting this matrix to gene level read counts
20 months ago
cpad0112 11k
0
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1
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209
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Comment: C: How to take out sequences with barcode?
20 months ago
cpad0112 11k
1
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0
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1.2k
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Comment: C: VCF tabix query by ID column
20 months ago
cpad0112 11k
0
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0
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377
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Comment: C: Extract overrepresented sequences from fastq or fastqc
20 months ago
cpad0112 11k
0
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0
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161
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Comment: C: how to get fasta or fastaQ sequences of the differentially expressed gene which
20 months ago
cpad0112 11k
0
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0
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268
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Comment: C: How are probabilities of insertions and deletions encoded in FASTQ?
20 months ago
cpad0112 11k
0
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0
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357
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Comment: C: How to extract filename and change text in the same file
20 months ago
cpad0112 11k
0
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1
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237
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Comment: C: Extract several parts from fasta header
20 months ago
cpad0112 11k
0
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0
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263
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Comment: C: How do I know if I have DNA contamination in RNA-seq data?
20 months ago
cpad0112 11k
2
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0
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333
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Comment: C: How to extract organisms name from the headers in a multi-fasta file?
20 months ago
cpad0112 11k
0
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0
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174
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Comment: C: Writing a script for quast
20 months ago
cpad0112 11k
1
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0
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185
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Comment: C: Figures generated from RNAseq
20 months ago
cpad0112 11k
0
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0
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176
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Comment: C: How to match proteins to a genome
20 months ago
cpad0112 11k
0
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0
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184
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Answer: C: Start Codon in Translate() in R
20 months ago
cpad0112 11k
1
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0
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925
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Comment: C: GBS paired reads splits it into several smaller files based on barcode matching
20 months ago
cpad0112 11k
1
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0
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256
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Comment: C: Parsing MEGAN blast2lca output
20 months ago
cpad0112 11k
0
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0
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521
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Comment: C: Variant calling on single sample Macaque WGS data - advice please
20 months ago
cpad0112 11k
1
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0
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230
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Answer: C: how to run mscore in bash?
20 months ago
cpad0112 11k
1
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0
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333
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Comment: C: Can HISAT2 be invoked in bash shell, and can it be fed variables or names with w
20 months ago
cpad0112 11k
0
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1
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301
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Answer: A: How to extract only sequences that contain a specific percentage of Cysteines (
20 months ago
cpad0112 11k
0
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0
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523
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Comment: C: Install trimmomatic on windows computer?
20 months ago
cpad0112 11k
0
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0
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259
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Comment: C: Insert mutations in a reference genome from a vcf
20 months ago
cpad0112 11k
1
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1
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339
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Comment: C: does the multiple linear regression from glmnet generate a formula?
20 months ago
cpad0112 11k
1
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0
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301
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Answer: C: Exome Seq tutorial
20 months ago
cpad0112 11k
1
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1
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256
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Comment: C: Parsing MEGAN blast2lca output
20 months ago
cpad0112 11k
1
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0
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467
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Comment: C: How to extract pattern matching sequences from a fasta file?
20 months ago
cpad0112 11k
0
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0
Replies
253
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Comment: C: CLINVAR multiple molecular consequences
20 months ago
cpad0112 11k
0
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1
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253
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Comment: C: CLINVAR multiple molecular consequences
20 months ago
cpad0112 11k
0
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0
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467
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Comment: C: How to extract pattern matching sequences from a fasta file?
20 months ago
cpad0112 11k
0
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0
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461
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Comment: C: Remove duplicates in an extremely large text file
21 months ago
cpad0112 11k
0
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0
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461
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Comment: C: Remove duplicates in an extremely large text file
21 months ago
cpad0112 11k
2
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1
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1.4k
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Answer: C: geom_bar plot with several variables
21 months ago
cpad0112 11k
0
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0
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230
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Comment: C: DE and enrichment analysis pipeline
21 months ago
cpad0112 11k
1
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0
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370
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Comment: C: How to subset reads from fastq file to use as test file on a script
21 months ago
cpad0112 11k
0
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1
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196
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Comment: C: 97 Different Ways to do Metagenomics Classification...
21 months ago
cpad0112 11k
0
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1
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331
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Comment: C: How to get a FASTA file where you filter by length to exclude sortest and longes
21 months ago
cpad0112 11k
0
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1
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674
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Comment: C: Variant calling with GATK on human cancer samples aligned against GRCh38.p10
21 months ago
cpad0112 11k
0
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0
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215
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Comment: C: add cut off lines to volcano plot
21 months ago
cpad0112 11k
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