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cpad0112 ♦ 11k
Role: Moderator
Status: New
Handle: @cpad011220673
Reputation: 11270
Email: c*********@gmail.com
Joined: 9 months ago
Last seen: 9 months ago
Location: India

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1
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267
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C: How to extract a sequence from a multi-fasta file based on its position?
1 Vote | 0 Replies
10 months ago
cpad0112 11k
1
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186
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C: Using awk or sed to edit a column in a gtf file
1 Vote | 0 Replies
10 months ago
cpad0112 11k
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1.5k
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C: SNP annotation with R and SnpEff
0 Votes | 0 Replies
10 months ago
cpad0112 11k
2
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159
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C: Arrange multiple column into a single column using R-language
2 Votes | 1 Reply
10 months ago
cpad0112 11k
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154
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C: Fasta to FastQ with known qualities
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10 months ago
cpad0112 11k
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213
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C: miRNA predictions from large set of long non coding RNA
0 Votes | 0 Replies
10 months ago
cpad0112 11k
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1
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312
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C: Looking for experienced bioinformatician: Ahmedabad, Gujarat, India
0 Votes | 1 Reply
10 months ago
cpad0112 11k
0
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179
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C: How to install tcl/tk in R in linux without root permission
0 Votes | 0 Replies
10 months ago
cpad0112 11k
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183
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C: How can I compare two reference genome
0 Votes | 0 Replies
10 months ago
cpad0112 11k
2
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227
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C: fastq file format error
2 Votes | 2 Replies
10 months ago
cpad0112 11k
1
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1
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310
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C: Shell script to automate trimmomatic for multiple samples
1 Vote | 1 Reply
11 months ago
cpad0112 11k
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1
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151
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C: Text file: combining lines together based on value within certain column
0 Votes | 1 Reply
11 months ago
cpad0112 11k
1
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4.7k
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C: how can i remove duplicated variants from vcf file?
1 Vote | 3 Replies
2.7 years ago
cpad0112 11k • updated 11 months ago
RamRS 21k
1
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142
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C: How can I use read.fasta to load a lot of sequences that are stored in a folder
1 Vote | 0 Replies
11 months ago
cpad0112 11k
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2.9k
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C: Calculate length of sequences from fasta file
0 Votes | 0 Replies
11 months ago
cpad0112 11k
1
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280
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C: shell question: How to run multiple paired end alignment in shell?
1 Vote | 0 Replies
12 months ago
cpad0112 11k
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2
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280
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C: shell question: How to run multiple paired end alignment in shell?
0 Votes | 2 Replies
12 months ago
cpad0112 11k
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1
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8.6k
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C: How to use edgeR to compare multiple conditions to reference condtiion
0 Votes | 1 Reply
12 months ago
cpad0112 11k
1
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205
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C: How to find gene names for csv files created by R
1 Vote | 0 Replies
12 months ago
cpad0112 11k
1
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181
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C: Where and how can I find uncharacterized genes in the human genome?
1 Vote | 0 Replies
12 months ago
cpad0112 11k
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205
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C: How to find gene names for csv files created by R
0 Votes | 1 Reply
12 months ago
cpad0112 11k
4
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235
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C: An error occured during fastqc.
4 Votes | 0 Replies
12 months ago
cpad0112 11k
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308
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C: Plots in R for bioinformatics analyses
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12 months ago
cpad0112 11k
2
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1
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177
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C: Remove text flanking .. on fasta-headers
2 Votes | 1 Reply
12 months ago
cpad0112 11k
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195
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C: Extract fasta files that are not empty from a directory and subdirectories
0 Votes | 0 Replies
12 months ago
cpad0112 11k
1
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170
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C: How to predict non-sense mediated decay from Illumina reads?
1 Vote | 1 Reply
12 months ago
cpad0112 11k
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215
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C: Number of read with fastq file name
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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192
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C: Best approach to filter variants in a noncoding region?
0 Votes | 0 Replies
12 months ago
cpad0112 11k
0
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233
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C: How to cancat two multiplexed fastq files from GBS with two lanes?
0 Votes | 0 Replies
12 months ago
cpad0112 11k
0
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402
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C: We are seeking a Scientist II/Sr. Scientist in Bioinformatics!
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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271
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C: Extract allele count from gnomAD using R
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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218
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C: Two genes in one SNP
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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1
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230
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C: How to edit fasta header with underscores
0 Votes | 1 Reply
12 months ago
cpad0112 11k
1
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1.2k
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C: Add rsid to LD output from vcftools
1 Vote | 0 Replies
12 months ago
cpad0112 11k
1
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280
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C: How to generate a stripplot like this in Python or R?
1 Vote | 0 Replies
12 months ago
cpad0112 11k
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202
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C: How to figure out which adapter has been used
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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210
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C: Experimental design RNA-seq
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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1
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280
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C: How to generate a stripplot like this in Python or R?
0 Votes | 1 Reply
12 months ago
cpad0112 11k
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331
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C: Bam header editing
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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206
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C: Extract in specific column with patter file
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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206
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C: Extract in specific column with patter file
0 Votes | 0 Replies
12 months ago
cpad0112 11k
1
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232
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C: Splitting string in a column using character
1 Vote | 1 Reply
12 months ago
cpad0112 11k
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232
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C: Splitting string in a column using character
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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283
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C: Having trouble using wildcard
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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1
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283
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C: Having trouble using wildcard
0 Votes | 1 Reply
12 months ago
cpad0112 11k
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1
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283
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C: Having trouble using wildcard
0 Votes | 1 Reply
12 months ago
cpad0112 11k
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195
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C: Differential expression analysis for time course data
0 Votes | 0 Replies
12 months ago
cpad0112 11k
4
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1
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283
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C: Interesting Bioinformatics Project Ideas (NGS, RNA-Seq)
4 Votes | 1 Reply
12 months ago
cpad0112 11k
1
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1
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379
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C: Converting p value to -log10(p value) to plot the graph
1 Vote | 1 Reply
12 months ago
cpad0112 11k
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272
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C: Splitting .vcf file
0 Votes | 0 Replies
12 months ago
cpad0112 11k
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1
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272
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C: Splitting .vcf file
0 Votes | 1 Reply
13 months ago
cpad0112 11k
2
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308
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C: How extract the longest overlap?
2 Votes | 0 Replies
13 months ago
cpad0112 11k
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258
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C: Creating binary matrix of absence/presence of genes in multiple column lists
0 Votes | 0 Replies
13 months ago
cpad0112 11k
1
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378
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C: How to create a tab delimited file?
1 Vote | 0 Replies
13 months ago
cpad0112 11k
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249
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C: Split DNA sequence into dimers
0 Votes | 0 Replies
13 months ago
cpad0112 11k
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1
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249
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C: Split DNA sequence into dimers
0 Votes | 1 Reply
13 months ago
cpad0112 11k
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202
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C: Find binding sites start and end positions in genome using biophyton
0 Votes | 0 Replies
13 months ago
cpad0112 11k
3
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268
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C: Unable to query specific ensembl ID through biomaRt (R) or mygene (Python)
3 Votes | 0 Replies
13 months ago
cpad0112 11k
1
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290
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C: awk or/and cut command for reformatting sequence header identifiers of fastq fil
1 Vote | 0 Replies
13 months ago
cpad0112 11k
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539
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C: collapsing transcript expression to gene-level expression
0 Votes | 0 Replies
13 months ago
cpad0112 11k
1
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539
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C: collapsing transcript expression to gene-level expression
1 Vote | 2 Replies
13 months ago
cpad0112 11k
1
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1
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539
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C: collapsing transcript expression to gene-level expression
1 Vote | 1 Reply
13 months ago
cpad0112 11k
1
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1
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539
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C: Converting this matrix to gene level read counts
1 Vote | 1 Reply
13 months ago
cpad0112 11k
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1
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193
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C: How to take out sequences with barcode?
0 Votes | 1 Reply
13 months ago
cpad0112 11k
1
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1.2k
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C: VCF tabix query by ID column
1 Vote | 0 Replies
13 months ago
cpad0112 11k
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359
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C: Extract overrepresented sequences from fastq or fastqc
0 Votes | 0 Replies
13 months ago
cpad0112 11k
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153
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C: how to get fasta or fastaQ sequences of the differentially expressed gene which
0 Votes | 0 Replies
13 months ago
cpad0112 11k
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247
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C: How are probabilities of insertions and deletions encoded in FASTQ?
0 Votes | 0 Replies
13 months ago
cpad0112 11k
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328
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C: How to extract filename and change text in the same file
0 Votes | 0 Replies
13 months ago
cpad0112 11k
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1
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215
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C: Extract several parts from fasta header
0 Votes | 1 Reply
13 months ago
cpad0112 11k
0
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251
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C: How do I know if I have DNA contamination in RNA-seq data?
0 Votes | 0 Replies
13 months ago
cpad0112 11k
2
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304
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C: How to extract organisms name from the headers in a multi-fasta file?
2 Votes | 0 Replies
13 months ago
cpad0112 11k
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165
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C: Writing a script for quast
0 Votes | 0 Replies
13 months ago
cpad0112 11k
1
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178
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C: Figures generated from RNAseq
1 Vote | 0 Replies
13 months ago
cpad0112 11k
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163
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C: How to match proteins to a genome
0 Votes | 0 Replies
13 months ago
cpad0112 11k
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172
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C: Start Codon in Translate() in R
0 Votes | 0 Replies
13 months ago
cpad0112 11k
1
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915
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C: GBS paired reads splits it into several smaller files based on barcode matching
1 Vote | 0 Replies
13 months ago
cpad0112 11k
1
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248
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C: Parsing MEGAN blast2lca output
1 Vote | 0 Replies
13 months ago
cpad0112 11k
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506
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C: Variant calling on single sample Macaque WGS data - advice please
0 Votes | 0 Replies
13 months ago
cpad0112 11k
1
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211
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C: how to run mscore in bash?
1 Vote | 0 Replies
13 months ago
cpad0112 11k
1
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318
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C: Can HISAT2 be invoked in bash shell, and can it be fed variables or names with w
1 Vote | 0 Replies
13 months ago
cpad0112 11k
0
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1
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286
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A: How to extract only sequences that contain a specific percentage of Cysteines (
0 Votes | 1 Reply
13 months ago
cpad0112 11k
0
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0
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508
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C: Install trimmomatic on windows computer?
0 Votes | 0 Replies
13 months ago
cpad0112 11k
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0
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249
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C: Insert mutations in a reference genome from a vcf
0 Votes | 0 Replies
13 months ago
cpad0112 11k
1
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1
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323
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C: does the multiple linear regression from glmnet generate a formula?
1 Vote | 1 Reply
13 months ago
cpad0112 11k
1
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0
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290
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C: Exome Seq tutorial
1 Vote | 0 Replies
13 months ago
cpad0112 11k
1
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1
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248
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C: Parsing MEGAN blast2lca output
1 Vote | 1 Reply
13 months ago
cpad0112 11k
1
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0
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459
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C: How to extract pattern matching sequences from a fasta file?
1 Vote | 0 Replies
13 months ago
cpad0112 11k
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234
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C: CLINVAR multiple molecular consequences
0 Votes | 0 Replies
13 months ago
cpad0112 11k
0
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1
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234
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C: CLINVAR multiple molecular consequences
0 Votes | 1 Reply
13 months ago
cpad0112 11k
0
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0
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459
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C: How to extract pattern matching sequences from a fasta file?
0 Votes | 0 Replies
13 months ago
cpad0112 11k
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425
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C: Remove duplicates in an extremely large text file
0 Votes | 0 Replies
14 months ago
cpad0112 11k
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425
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C: Remove duplicates in an extremely large text file
0 Votes | 0 Replies
14 months ago
cpad0112 11k
2
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1
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1.4k
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C: geom_bar plot with several variables
2 Votes | 1 Reply
14 months ago
cpad0112 11k
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0
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215
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C: DE and enrichment analysis pipeline
0 Votes | 0 Replies
14 months ago
cpad0112 11k
1
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358
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C: How to subset reads from fastq file to use as test file on a script
1 Vote | 0 Replies
14 months ago
cpad0112 11k
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1
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180
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C: 97 Different Ways to do Metagenomics Classification...
0 Votes | 1 Reply
14 months ago
cpad0112 11k
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1
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310
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C: How to get a FASTA file where you filter by length to exclude sortest and longes
0 Votes | 1 Reply
14 months ago
cpad0112 11k
0
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1
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666
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C: Variant calling with GATK on human cancer samples aligned against GRCh38.p10
0 Votes | 1 Reply
14 months ago
cpad0112 11k
0
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0
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207
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C: add cut off lines to volcano plot
0 Votes | 0 Replies
14 months ago
cpad0112 11k
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