Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Limit : all time
all time
today
this week
this month
this year
116,014 results • Page
1 of 2321
Sort: Rank
Rank
Views
Votes
Replies
0
votes
0
replies
8
views
Contradictions in GSEA results
GSEA
Enrichment-analysis
PEA
updated 5 minutes ago by
Ram
43k • written 10 minutes ago by
Tolga
▴ 20
0
votes
0
replies
6
views
Illumina Dna Prep kit for sequencing phage linear genomes
tagmentation
transposons
phagetermini
sequencing
7 minutes ago by
alenew.am
• 0
0
votes
3
replies
154
views
FindAllMarkers not working (Error (data layers are not joined. Please run JoinLayersWarning: When testing 1 versus all)
FindAllMarkers
seurat
re-clustering
updated just now by
Ram
43k • written 10 hours ago by
Nitin
• 0
0
votes
1
reply
21
views
(sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
scRNA-seq
updated 37 minutes ago by
Ram
43k • written 1 hour ago by
chiditatawmbi
• 0
0
votes
1
reply
24
views
Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization
rnaseq
updated 2 minutes ago by
Ram
43k • written 1 hour ago by
Picasa
▴ 640
0
votes
0
replies
28
views
How to change alternate conformation occupancy ?
Module
Bio.PDB.Atom
Bio.PDB
updated 2 hours ago by
GenoMax
140k • written 2 hours ago by
udakshi
• 0
0
votes
0
replies
35
views
Training
chip-seq
ScATAC-seq
2 hours ago by
Manhezz
• 0
1
vote
2
replies
48
views
Issue with making local BLAST database
database
mitochodrial
diatoms
blast
ncbi
57 minutes ago by
Begonia_pavonina
▴ 140
1
vote
1
reply
244
views
diffbind : killed dba.count(DBsample, bParallel=FALSE)
diffbind
r
atacseq
3 hours ago by
Pierre Lindenbaum
160k
0
votes
1
reply
47
views
ONT direct RNA sequencing
gz
DRS
ONT
gunzip
gzip
updated 3 hours ago by
dthorbur
★ 1.7k • written 3 hours ago by
Karina
• 0
0
votes
1
reply
46
views
Flow Cytometry Data Analysis by Seurat
Seurat
updated 2 hours ago by
ATpoint
81k • written 3 hours ago by
gdfsnkfns
• 0
793
votes
167
replies
139k
views
109 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
training
handbook
updated 9 weeks ago by
Biostar
2.6k • written 7.3 years ago by
Istvan Albert
100k
1
vote
8
replies
145
views
struggle to get fasta files from ucsc goldenPath
ucsc
getfasta
fasta
2 hours ago by
Lila M
★ 1.2k
1
vote
1
reply
59
views
Volcano Plot Output Inquiry: Graphs Facing Down
rstudio
volcano-plot
updated 3 hours ago by
Ram
43k • written 4 hours ago by
Pumla
• 0
0
votes
1
reply
62
views
Merging featureCounts output for different species
featureCount
RNAseq
updated 4 hours ago by
andrebolerbarros
• 0 • written 5 hours ago by
Christian
• 0
2
votes
2
replies
75
views
Interproscan taking so much time
slurm
interproscan
transcriptomics
updated 4 hours ago by
dthorbur
★ 1.7k • written 5 hours ago by
Mohamed Abderrahmane
▴ 10
0
votes
0
replies
42
views
Combine rename and rmdup in SeqKit to remove duplicate sequences and append N in header? Sort by occurence?
seqkit
fasta
5 hours ago by
Broccoli
• 0
0
votes
0
replies
42
views
Is there a good tool/reference for PBP and porin analysis
PBP
porin
5 hours ago by
blur
▴ 280
0
votes
0
replies
50
views
meta-analysis on RNA seq AND microarray results
microarray
RNA
6 hours ago by
liuyibin2005
• 0
49
votes
30
replies
11k
views
13 follow
Tutorial:
How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation
meta
how-to
updated 2 hours ago by
Istvan Albert
100k • written 8.1 years ago by
Ram
43k
0
votes
0
replies
39
views
SPOTlight deconvolution logFC, logFC cohen or mean.AUC
spatial-transcriptomics
SPOTlight
logFC
deconvolution
updated 40 minutes ago by
Ram
43k • written 6 hours ago by
M'zelle
• 0
0
votes
5
replies
167
views
calculate mismatch rate from VCF file
mismatch-rate
VCF
updated 41 minutes ago by
Ram
43k • written 12 hours ago by
Dora
▴ 10
2
votes
3
replies
261
views
Hybrid assembly Pacbio- Nanopore
long-reads
hybric
assembly
genome
short-reads
updated 7 hours ago by
colindaven
6.3k • written 2 days ago by
Lissa Cruz Saavedra
• 0
0
votes
0
replies
60
views
In scRNA, How should I set QC standards?
scRNA
QC
9 hours ago by
mnx0723
• 0
0
votes
0
replies
51
views
Annotation of Complex genomes using NCBI Genome Workbench
Genome-Workbench
MAKER
updated 33 minutes ago by
Ram
43k • written 10 hours ago by
SAsciences
• 0
0
votes
2
replies
224
views
Error occurs when migrate-n software performs "make mpis"
migrate-n
11 hours ago by
lingxue
• 0
0
votes
0
replies
60
views
How to check if a few pathways have relationship?
MSigdb
REACTOME
KEGG
12 hours ago by
Chris
▴ 260
2
votes
10
replies
696
views
Only one read per run - Trying to use CellRangerv7
Fastq
CellRanger
updated 40 minutes ago by
Ram
43k • written 5 weeks ago by
Sky
▴ 10
3
votes
2
replies
266
views
FDR and Bonferroni
FDR
Bonferroni
updated 13 hours ago by
joe
▴ 470 • written 2 days ago by
song
• 0
0
votes
1
reply
470
views
Which fasta files are assembled transcripts IDBA_tran assembler ?
RNA-Seq
Assembly
updated 15 hours ago by
weidonglu
• 0 • written 3.8 years ago by
sunnykevin97
▴ 980
0
votes
0
replies
75
views
doing some ontology enrichment analysis
GO
15 hours ago by
aleksk779
• 0
2
votes
1
reply
168
views
Choosing an FC Threshold
statistics
rna-seq
updated 15 hours ago by
Gordon Smyth
★ 6.9k • written 1 day ago by
Netanel
• 0
0
votes
1
reply
108
views
Converting AutoDock-Vina PDBQTs to PDB files
Docking
AutoDock
Vina
PDBQT
PDB
updated 18 hours ago by
Mensur Dlakic
★ 26k • written 1 day ago by
Ricard
• 0
0
votes
2
replies
146
views
novel and know mir156 and mir172
a
updated 15 hours ago by
gayachit
▴ 200 • written 18 hours ago by
Fadmo
• 0
0
votes
1
reply
94
views
Update R in Posit Workbench
R
Posit
updated 19 hours ago by
Ram
43k • written 19 hours ago by
Nitin
• 0
2
votes
8
replies
236
views
Piping samtools to R
R
NGS
bash
samtools
19 hours ago by
joe
▴ 470
8
votes
6
replies
385
views
Pangenome of plant
pangenome
plant
updated 21 hours ago by
talbots
• 0 • written 1 day ago by
analyst
▴ 10
1
vote
2
replies
174
views
vg call is time consuming
vg
21 hours ago by
Maxine
▴ 40
4
votes
14
replies
4.5k
views
8 follow
Installation: Tax4Fun2 package are not found and github repository is not maintained anymore
Tax4Fun2
updated 21 hours ago by
Ram
43k • written 21 months ago by
Elsa
▴ 20
0
votes
8
replies
404
views
STAR aligner options
STAR
5 hours ago by
theophile
• 0
2
votes
3
replies
505
views
Website or tool to obtain a list of genes that participate in a specific process?
genomics
updated 22 hours ago by
NancyTLi
• 0 • written 3 months ago by
Hamtaro
▴ 50
0
votes
2
replies
291
views
How to obtain Node/ Edge information from a Reactome Pathway
R
API
pathways
reactome
databases
updated 22 hours ago by
GenoMax
140k • written 4 weeks ago by
K.patel5
▴ 140
0
votes
2
replies
155
views
Why counting by diffbind and featurecounts differ?
featurecounts
diffbind
17 hours ago by
Ankit
▴ 500
0
votes
1
reply
102
views
Wanting to make a Venn diagram of ATACseq peak files, unsure of where to start
ATAC-seq
updated 22 hours ago by
Yogi
▴ 70 • written 23 hours ago by
Ronin
• 0
0
votes
0
replies
79
views
Association Module to traits
module-trait-relationships
WGCNA
GENIE3
DOMINO
updated 21 hours ago by
Ram
43k • written 23 hours ago by
r.shiasi3897
▴ 10
0
votes
0
replies
79
views
Number of pathway result from GSVA
GSVA
1 day ago by
Chris
▴ 260
0
votes
1
reply
118
views
How can I remove duplicate SNP?
plink
updated 1 day ago by
iraun
6.2k • written 1 day ago by
Zhennan
• 0
0
votes
1
reply
129
views
SNP VCF files from hybrid populations and parental populations generated by GBS in public databases
contaminations
verification
parental
check
updated 21 hours ago by
Ram
43k • written 1 day ago by
Hajar
• 0
0
votes
0
replies
76
views
Creating a custom ontology for peptides
ontology
peptide
1 day ago by
Mathew
• 0
0
votes
3
replies
210
views
convert cds to seurat object
R
monocle3
seurat
updated 3 hours ago by
edoardofilippi1998
• 0 • written 1 day ago by
sooni
▴ 20
116,014 results • Page
1 of 2321
Recent Votes
How can two contradicted gene sets be enriched in a cancer sample in GSEA analysis?
Comment: Only one read per run - Trying to use CellRangerv7
Comment: Interproscan taking so much time
Answer: Interproscan taking so much time
Comment: Volcano Plot Output Inquiry: Graphs Facing Down
A: Crispr-cas9 screen analysis mageck
A: Crispr-cas9 screen analysis mageck
Recent Locations •
All
United States,
just now
United States,
just now
Germany,
just now
United States,
1 minute ago
France - Institut du Thorax,
2 minutes ago
United States,
3 minutes ago
Lyon,
5 minutes ago
Recent Awards •
All
Commentator
to
Devon Ryan
104k
Popular Question
to
amitpande74
▴ 20
Scholar
to
Pierre Lindenbaum
160k
Popular Question
to
beacamara
• 0
Popular Question
to
blur
▴ 280
Popular Question
to
ATpoint
81k
Teacher
to
Haci
▴ 550
Recent Replies
Comment: FindAllMarkers not working (Error (data layers are not joined. Please run JoinL
by
Nitin
• 0
I did ran the `JoinLayers()` even then it is not working, here is the output before and after ```r DefaultAssay(combined1) <- 'RNA' com…
Comment: FindAllMarkers not working (Error (data layers are not joined. Please run JoinL
by
Nitin
• 0
I tried that too. It did not work.
Comment: (sc)RNA-seq dataset for these cell lines: HEK293, HeLa, PC3 and U2OS
by
GenoMax
140k
Try SRA-explorer with search terms you want. Guide here: https://www.biostars.org/p/366721/ Check these portals: https://singlecell.broad…
Comment: Issue with making local BLAST database
by
Begonia_pavonina
▴ 140
Thank you @genomax, if I have well understood the `retmax` parameter and 10000 entries limitation are linked to the R package, and not to t…
Comment: Nanopore data filtering using fastp
by
emilydolivo97
• 0
thank you , this is my code : import sys import os import subprocess class FastpFiltering: def __init__(self, input_folder, fastp_ou…
Comment: Nanopore data filtering using fastp
by
GenoMax
140k
You can also use `reformat.sh` from [**BBMap suite**][1]. Look at sampling options. [1]: https://sourceforge.net/projects/bbmap/
Comment: calculate mismatch rate from VCF file
by
Pierre Lindenbaum
160k
> I was using it but the output file was too big pipe the output
Comment: Nanopore data filtering using fastp
by
dthorbur
★ 1.7k
Share code and an example please.
Comment: calculate mismatch rate from VCF file
by
Dora
▴ 10
I was using it but the output file was too big, so that I thought the vcf file was more efficient. But now I know that I can stop working o…
Comment: Interproscan taking so much time
by
Mohamed Abderrahmane
▴ 10
Thank you for your reply. I have just executed the computation with parallelization as you mentioned, and I will observe the differences. H…
Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
Of course ... But as 'expected' the range `range=chr8:127794533-128101253` in the output sequence file belongs to: LF385466, LF385467, MA62…
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
Can you select the output format as sequence instead of BED?
Comment: struggle to get fasta files from ucsc goldenPath
by
Lila M
★ 1.2k
Could you please elaborate how to retrieve the sequences directly from the table browser? Thanks!
Comment: struggle to get fasta files from ucsc goldenPath
by
GenoMax
140k
If coordinates in your BED file refer to chromosomal locations then you need to use the whole genome file and get those sections by the met…
Comment: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
by
Istvan Albert
100k
maybe it would work better to ask the OP to post their question as a new one and delete this answer after, if you delete the post they ca…
Traffic: 3185 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6