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Bedtools genomecov option to keep columns 4-6?
genomecov bed bedtools
updated 18 months ago by • 0 • written 3.9 years ago by ▴ 710
1
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2
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3.0k
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Comment: Comment: Need help to remove NA values from data frame
2.6 years ago by rioualen ▴ 710
1
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1
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3.0k
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Answer: Answer: Need help to remove NA values from data frame
2.6 years ago by rioualen ▴ 710
1
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1
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700
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A regex to convert operon names to genes?
regex r gene operon
updated 2.7 years ago by ★ 2.5k • written 2.7 years ago by ▴ 710
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0
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2.4k
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Answer: Answer: Where to download a table of operons with genes for E. coli?
2.7 years ago by rioualen ▴ 710
5
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1
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1.3k
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Answer: Answer: How to combine a data frame with another data frame containing comma-separated v
2.7 years ago by rioualen ▴ 710
4
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7
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2.1k
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can't run Aracne -- Java error
aracne RNA-Seq network
updated 2.8 years ago by ▴ 730 • written 3.7 years ago by ▴ 710
1
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7
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3.7k
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Using the Homer suite with conda
homer conda bioconda
updated 3.2 years ago by 20 • written 6.9 years ago by ▴ 710
3
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1
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2.1k
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Answer: A: can't run Aracne -- Java error
3.7 years ago by rioualen ▴ 710
0
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0
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2.1k
views
Comment: C: can't run Aracne -- Java error
3.7 years ago by rioualen ▴ 710
0
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1
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2.1k
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Comment: C: can't run Aracne -- Java error
3.7 years ago by rioualen ▴ 710
0
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1
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1.8k
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Comment: C: Generate sequence alignment and heatmap for TF binding sites
4.2 years ago by rioualen ▴ 710
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3
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1.8k
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Generate sequence alignment and heatmap for TF binding sites
alignment ChIP-Seq logo heatmap
updated 4.2 years ago by 10k • written 4.2 years ago by ▴ 710
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2
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12k
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Comment: C: Modern software for whole genome alignment visualization
4.2 years ago by rioualen ▴ 710
0
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0
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1.9k
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Comment: C: Fusing arrays with equal dimmensions
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 710
1
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1
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1.9k
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Answer: A: Fusing arrays with equal dimmensions
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 710
1
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1
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6.8k
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Comment: C: Empty output from MACS2 when using control
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 710
2
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1
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3.6k
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Answer: A: Looking for ways to download ChIP-seq datasets programmatically in a pipeline
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 710
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0
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3.6k
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Comment: C: Building sequence logo from uneven sequences
4.9 years ago by rioualen ▴ 710
0
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1
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3.6k
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Comment: C: Building sequence logo from uneven sequences
4.9 years ago by rioualen ▴ 710
1
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10
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3.6k
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Building sequence logo from uneven sequences
logo alignment fasta ggseqlogo weblogo
4.9 years ago by rioualen ▴ 710
0
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0
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3.6k
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Comment: C: Building sequence logo from uneven sequences
4.9 years ago by rioualen ▴ 710
0
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1
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3.6k
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Comment: C: Building sequence logo from uneven sequences
4.9 years ago by rioualen ▴ 710
0
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1
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3.6k
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Comment: C: Building sequence logo from uneven sequences
4.9 years ago by rioualen ▴ 710
0
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0
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42k
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Comment: C: Get chromosome sizes from fasta file
updated 5.0 years ago by 43k • written 8.3 years ago by ▴ 710
26
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2
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42k
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Answer: C: Get chromosome sizes from fasta file
updated 5.0 years ago by 43k • written 8.2 years ago by ▴ 710
60
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12
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42k
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10 follow
Get chromosome sizes from fasta file
genome ucsc
updated 17 months ago by • 0 • written 8.3 years ago by ▴ 710
0
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0
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34k
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Comment: C: Trimming adapter sequences - is it necessary?
5.0 years ago by rioualen ▴ 710
0
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2
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34k
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Comment: C: Trimming adapter sequences - is it necessary?
5.0 years ago by rioualen ▴ 710
0
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0
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2.9k
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Comment: C: Download data from GEO/SRA using link
5.0 years ago by rioualen ▴ 710
3
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2
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2.9k
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Download data from GEO/SRA using link
sra fastq geo
updated 5.0 years ago by 141k • written 5.0 years ago by ▴ 710
1
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0
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4.4k
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Comment: C: Possible reason for no peaks generated by MACS2
5.5 years ago by rioualen ▴ 710
1
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4
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1.9k
views
Bedtools window: getting feature from bedfile instead of GFF3 file
bedtools window
updated 6.3 years ago by 35k • written 6.3 years ago by ▴ 710
3
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2
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2.3k
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GC content biases in RNA-seq data of A.thaliana
RNA-Seq GC Athaliana mapping
6.5 years ago by rioualen ▴ 710
0
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0
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12k
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Comment: C: Extract basic info from fastq files in an efficient way?
6.6 years ago by rioualen ▴ 710
0
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0
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12k
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Comment: C: Extract basic info from fastq files in an efficient way?
6.6 years ago by rioualen ▴ 710
0
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1
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12k
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Comment: C: Extract basic info from fastq files in an efficient way?
6.6 years ago by rioualen ▴ 710
14
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8
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12k
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Extract basic info from fastq files in an efficient way?
fastq fastqc
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 710
2
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0
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4.0k
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Answer: A: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
6.6 years ago by rioualen ▴ 710
10
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11
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4.0k
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"Segmentation fault (core dumped)" using sickle for trimming, depending on options used
trimming sickle virtual-machine
6.6 years ago by rioualen ▴ 710
0
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1
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4.0k
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Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
6.8 years ago by rioualen ▴ 710
1
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1
reply
4.0k
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Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
6.8 years ago by rioualen ▴ 710
1
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0
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4.0k
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Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
6.8 years ago by rioualen ▴ 710
1
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0
replies
4.0k
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Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
6.8 years ago by rioualen ▴ 710
1
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1
reply
4.0k
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Comment: C: "Segmentation fault (core dumped)" using sickle for trimming, depending on optio
6.8 years ago by rioualen ▴ 710
7
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4
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3.8k
views
Merge bed files, keep the peak count
bedtools bedops ChIP-Seq
updated 6.9 years ago by 20 • written 7.9 years ago by ▴ 710
0
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0
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3.7k
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Comment: C: Using the Homer suite with conda
6.9 years ago by rioualen ▴ 710
0
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1
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3.7k
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Comment: C: Using the Homer suite with conda
6.9 years ago by rioualen ▴ 710
0
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2
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3.7k
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Comment: C: Using the Homer suite with conda
6.9 years ago by rioualen ▴ 710
0
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1
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13k
views
Comment: C: Differences between trimming tools: cutadapt, bbduk and sickle
7.0 years ago by rioualen ▴ 710
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