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chris86 • 290
Status: New
Handle: @chris8619517
Reputation: 290
Joined: 20 months ago
Last seen: 21 months ago
Location: United Kingdom, London

I am a post-doc data analyst working in London in stratified medicine.

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2
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1.0k
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Answer: A: Quick way to Identify batch effect from covariates?
21 months ago
chris86 • 290
4
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1
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312
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Answer: A: Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
21 months ago
chris86 • 290
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Comment: C: how to choose optimal K in Consensus clustering
21 months ago
chris86 • 290
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5.7k
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Comment: C: how to choose optimal K in Consensus clustering
21 months ago
chris86 • 290
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326
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Comment: A: TopHat mapping error
23 months ago
chris86 • 290
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415
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Comment: C: MSTRGs are plaguing my RNA-Seq analysis
23 months ago
chris86 • 290
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415
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Comment: C: MSTRGs are plaguing my RNA-Seq analysis
23 months ago
chris86 • 290
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412
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Comment: C: Stringtie merge generates close duplicates of original transcripts
23 months ago
chris86 • 290
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1.6k
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Comment: C: Tools To Do the Alternative Splicing Analysis
23 months ago
chris86 • 290
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1.6k
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Comment: C: Tools To Do the Alternative Splicing Analysis
23 months ago
chris86 • 290
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Answer: A: Unsupervised subtype discovery
23 months ago
chris86 • 290
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286
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Answer: A: ConsensusClusterPlus for small sample
23 months ago
chris86 • 290
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180
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Comment: C: Highly uneven RINs, mapping rates, and methods to deal with this (normalisation,
2.1 years ago
chris86 • 290
2
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4
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180
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Highly uneven RINs, mapping rates, and methods to deal with this (normalisation, salmon)
RNA-Seq salmon normalisation
2.1 years ago
chris86 • 290
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180
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Comment: C: Highly uneven RINs, mapping rates, and methods to deal with this
2.1 years ago
chris86 • 290
1
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3.4k
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Comment: C: What Are Some Sanity Checks That Should Be Performed On Ngs Data?
2.1 years ago
chris86 • 290
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280
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Comment: C: Outliers from RNA_seq data
2.1 years ago
chris86 • 290
1
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1.6k
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Answer: A: Tools To Do the Alternative Splicing Analysis
2.1 years ago
chris86 • 290
2
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5.0k
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Answer: A: why PCA for RNA-Seq but tSNE for scRNA-seq?
2.1 years ago
chris86 • 290
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217
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Comment: C: Statistical comparison of expression of two _different_ genes
2.1 years ago
chris86 • 290
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217
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Comment: C: Statistical comparison of expression of two _different_ genes
2.2 years ago
chris86 • 290
2
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350
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Answer: A: problem for gene survival analysis through "Survival" package in R
2.3 years ago
chris86 • 290 • updated 2.3 years ago
RamRS 21k
1
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350
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Comment: C: problem for gene survival analysis through "Survival" package in R
2.3 years ago
chris86 • 290
0
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853
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Answer: A: Best method to do clustering (sub-group) single cell RNA-Seq data?
2.3 years ago
chris86 • 290
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5.7k
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Comment: C: how to choose optimal K in Consensus clustering
2.4 years ago
chris86 • 290
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2
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1.3k
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Comment: C: Heatmap : why scaling ?
2.6 years ago
chris86 • 290
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1.3k
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Comment: C: Heatmap : why scaling ?
2.6 years ago
chris86 • 290
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1
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5.7k
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Comment: C: how to choose optimal K in Consensus clustering
2.6 years ago
chris86 • 290
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4
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511
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Find transcription factors that may regulate list of genes
gene
2.8 years ago
chris86 • 290 • updated 2.8 years ago
Biojl ♦ 1.6k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
4.1 years ago
chris86 • 290
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1.1k
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Answer: A: how to score the values in a dictionary in python
4.2 years ago
chris86 • 290
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598
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Comment: C: Randomising gene expression data
4.2 years ago
chris86 • 290
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912
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Comment: C: Python implementation for enrichment of terms on already annotated genes
4.3 years ago
chris86 • 290
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1.1k
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Comment: C: Search for reads aligned to multiple chromosomes
4.3 years ago
chris86 • 290
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1.5k
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Comment: C: Using Random Forest as a supervised cluster algorithm?
4.3 years ago
chris86 • 290
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1.0k
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Comment: C: Measure the correlation between genes
4.3 years ago
chris86 • 290
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4.2k
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Answer: A: Combining Microarray and RNAseq data
4.6 years ago
chris86 • 290
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696
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Comment: C: R sharing code website for bioinformatics analysis
4.6 years ago
chris86 • 290
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1.5k
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Comment: C: Trimming adapters from miRNA-seq
4.6 years ago
chris86 • 290
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848
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Comment: C: trouble with tophat
4.6 years ago
chris86 • 290
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848
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Comment: C: trouble with tophat
4.6 years ago
chris86 • 290
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3.2k
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Comment: C: read trimming for small RNA NGS data
4.6 years ago
chris86 • 290
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3.2k
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Comment: C: read trimming for small RNA NGS data
4.6 years ago
chris86 • 290
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3.2k
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Comment: C: read trimming for small RNA NGS data
4.6 years ago
chris86 • 290
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983
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Comment: C: FastQC on rna-seq data
4.6 years ago
chris86 • 290
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985
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Comment: C: Flexibility of inner distance parameter for Tophat
4.7 years ago
chris86 • 290
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983
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Comment: C: FastQC on rna-seq data
4.7 years ago
chris86 • 290
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983
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Comment: C: FastQC on rna-seq data
4.7 years ago
chris86 • 290
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983
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Comment: C: FastQC on rna-seq data
4.7 years ago
chris86 • 290
1
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824
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Comment: C: ELI5: Different methods to analyse differential expression other than limma?
4.7 years ago
chris86 • 290
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