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chris86 • 290
Status: New
Handle: @chris8619517
Reputation: 290
Email: c*********@gmail.com
Joined: 14 months ago
Last seen: 14 months ago
Location: United Kingdom, London

I am a post-doc data analyst working in London in stratified medicine.

Posts Awards
2
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1.0k
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Answer: A: Quick way to Identify batch effect from covariates?
14 months ago
chris86 • 290
4
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1
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309
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Answer: A: Why do PCA+tSNE/viSNE or PCA+UMAP, and not just tSNE/viSNE or UMAP on their own?
14 months ago
chris86 • 290
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Comment: C: how to choose optimal K in Consensus clustering
14 months ago
chris86 • 290
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5.7k
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Comment: C: how to choose optimal K in Consensus clustering
14 months ago
chris86 • 290
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321
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Comment: A: TopHat mapping error
16 months ago
chris86 • 290
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410
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Comment: C: MSTRGs are plaguing my RNA-Seq analysis
16 months ago
chris86 • 290
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410
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Comment: C: MSTRGs are plaguing my RNA-Seq analysis
16 months ago
chris86 • 290
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412
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Comment: C: Stringtie merge generates close duplicates of original transcripts
16 months ago
chris86 • 290
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1.6k
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Comment: C: Tools To Do the Alternative Splicing Analysis
16 months ago
chris86 • 290
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1.6k
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Comment: C: Tools To Do the Alternative Splicing Analysis
16 months ago
chris86 • 290
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892
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Answer: A: Unsupervised subtype discovery
16 months ago
chris86 • 290
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280
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Answer: A: ConsensusClusterPlus for small sample
16 months ago
chris86 • 290
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177
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Comment: C: Highly uneven RINs, mapping rates, and methods to deal with this (normalisation,
18 months ago
chris86 • 290
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4
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177
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Highly uneven RINs, mapping rates, and methods to deal with this (normalisation, salmon)
RNA-Seq salmon normalisation
18 months ago
chris86 • 290
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177
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Comment: C: Highly uneven RINs, mapping rates, and methods to deal with this
18 months ago
chris86 • 290
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3.4k
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Comment: C: What Are Some Sanity Checks That Should Be Performed On Ngs Data?
18 months ago
chris86 • 290
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278
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Comment: C: Outliers from RNA_seq data
18 months ago
chris86 • 290
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1.6k
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Answer: A: Tools To Do the Alternative Splicing Analysis
18 months ago
chris86 • 290
2
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5.0k
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Answer: A: why PCA for RNA-Seq but tSNE for scRNA-seq?
18 months ago
chris86 • 290
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214
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Comment: C: Statistical comparison of expression of two _different_ genes
18 months ago
chris86 • 290
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214
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Comment: C: Statistical comparison of expression of two _different_ genes
20 months ago
chris86 • 290
2
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348
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Answer: A: problem for gene survival analysis through "Survival" package in R
20 months ago
chris86 • 290 • updated 20 months ago
RamRS 21k
1
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348
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Comment: C: problem for gene survival analysis through "Survival" package in R
20 months ago
chris86 • 290
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852
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Answer: A: Best method to do clustering (sub-group) single cell RNA-Seq data?
20 months ago
chris86 • 290
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1
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5.7k
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Comment: C: how to choose optimal K in Consensus clustering
22 months ago
chris86 • 290
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2
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1.3k
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Comment: C: Heatmap : why scaling ?
2.0 years ago
chris86 • 290
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1.3k
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Comment: C: Heatmap : why scaling ?
2.0 years ago
chris86 • 290
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1
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5.7k
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Comment: C: how to choose optimal K in Consensus clustering
2.0 years ago
chris86 • 290
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4
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503
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Find transcription factors that may regulate list of genes
gene
2.2 years ago
chris86 • 290 • updated 2.2 years ago
Biojl ♦ 1.6k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
3.6 years ago
chris86 • 290
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1.1k
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Answer: A: how to score the values in a dictionary in python
3.7 years ago
chris86 • 290
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597
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Comment: C: Randomising gene expression data
3.7 years ago
chris86 • 290
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911
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Comment: C: Python implementation for enrichment of terms on already annotated genes
3.7 years ago
chris86 • 290
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1.1k
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Comment: C: Search for reads aligned to multiple chromosomes
3.7 years ago
chris86 • 290
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1.5k
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Comment: C: Using Random Forest as a supervised cluster algorithm?
3.7 years ago
chris86 • 290
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1.0k
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Comment: C: Measure the correlation between genes
3.7 years ago
chris86 • 290
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4.2k
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Answer: A: Combining Microarray and RNAseq data
4.0 years ago
chris86 • 290
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696
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Comment: C: R sharing code website for bioinformatics analysis
4.0 years ago
chris86 • 290
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1.5k
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Comment: C: Trimming adapters from miRNA-seq
4.0 years ago
chris86 • 290
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847
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Comment: C: trouble with tophat
4.1 years ago
chris86 • 290
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847
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Comment: C: trouble with tophat
4.1 years ago
chris86 • 290
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3.2k
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Comment: C: read trimming for small RNA NGS data
4.1 years ago
chris86 • 290
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Comment: C: read trimming for small RNA NGS data
4.1 years ago
chris86 • 290
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3.2k
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Comment: C: read trimming for small RNA NGS data
4.1 years ago
chris86 • 290
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980
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Comment: C: FastQC on rna-seq data
4.1 years ago
chris86 • 290
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984
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Comment: C: Flexibility of inner distance parameter for Tophat
4.1 years ago
chris86 • 290
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980
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Comment: C: FastQC on rna-seq data
4.1 years ago
chris86 • 290
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980
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Comment: C: FastQC on rna-seq data
4.1 years ago
chris86 • 290
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980
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Comment: C: FastQC on rna-seq data
4.1 years ago
chris86 • 290
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821
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Comment: C: ELI5: Different methods to analyse differential expression other than limma?
4.1 years ago
chris86 • 290
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1.2k
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Answer: A: Combined p-values for DE genes from RNA-seq meta-analysis
4.2 years ago
chris86 • 290
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1
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1.2k
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Comment: C: Combined p-values for DE genes from RNA-seq meta-analysis
4.2 years ago
chris86 • 290
1
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7.4k
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Answer: A: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
4.2 years ago
chris86 • 290
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814
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Comment: C: Meta analysis of healthy and diseased data
4.2 years ago
chris86 • 290
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814
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Meta analysis of healthy and diseased data
next-gen
4.2 years ago
chris86 • 290
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1.1k
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Comment: C: WGNCA RNASeq without time series
4.3 years ago
chris86 • 290
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1.2k
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Comment: C: Sample size too small for ARACNE
4.4 years ago
chris86 • 290
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2
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930
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The same statistical test for all multi omics features
RNA-Seq next-gen sequencing
4.5 years ago
chris86 • 290
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1.4k
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Comment: C: Deriving p values for gene correlations by permutation analysis
4.5 years ago
chris86 • 290
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1.4k
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Deriving p values for gene correlations by permutation analysis
RNA-Seq next-gen
4.5 years ago
chris86 • 290
3
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1
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884
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Example mRNA and miRNA normalised data
Latest
4.5 years ago
chris86 • 290 • updated 4.5 years ago
hakimelakhrass • 70
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955
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Extraction of modules from networks generated using minet, e.g. CLR, MRNET, etc
RNA-Seq
4.5 years ago
chris86 • 290
1
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1.0k
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Integrated genomic analysis - mRNA, proteomics, flow, miRNA-seq
genome RNA-Seq
4.5 years ago
chris86 • 290
1
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3
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2.2k
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Limma contrast matrix help
next-gen
5.0 years ago
chris86 • 290 • updated 4.9 years ago
Biostar 20
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2.2k
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Comment: C: Limma contrast matrix help
5.0 years ago
chris86 • 290
1
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1.3k
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Detecting batch effects not via PCA
Latest next-gen
5.0 years ago
chris86 • 290 • updated 5.0 years ago
vassialk • 190
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1.3k
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Tactics for analysis of large number of highly similar diseased samples from RNA-seq&microarray data
RNA-Seq gene R genome sequencing
5.1 years ago
chris86 • 290
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