Biostar Beta. Not for public use.
nchuang • 200
Status: New
Handle: @nchuang18948
Reputation: 200
Joined: 19 months ago
Last seen: 2.3 years ago
Location: United States

Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : forum
0
Votes
0
Replies
295
Views
Possible to call variants from PacBio reads from a mixed sample?
pacbio long reads SNP
2.3 years ago
nchuang • 200
0
Votes
1
Reply
311
Views
Comment: C: CpG Methylation data from PacBio sequencing
2.3 years ago
nchuang • 200
5
Votes
10
Replies
311
Views
CpG Methylation data from PacBio sequencing
sequencing next-gen pacbio epigenetics
2.3 years ago
nchuang • 200 • updated 2.3 years ago
Antonio R. Franco ♦ 4.0k
0
Votes
1
Reply
311
Views
Comment: C: CpG Methylation data from PacBio sequencing
2.3 years ago
nchuang • 200
6
Votes
5
Replies
5.9k
Views
Best way to convert VCF to PLINK file format and merge chromosomes?
plink
5.4 years ago
nchuang • 200 • updated 2.4 years ago
Kevin Blighe 43k
0
Votes
0
Replies
1.1k
Views
Comment: C: VIew reads sorted by name in IGV
3.3 years ago
nchuang • 200
1
Vote
6
Replies
1.1k
Views
VIew reads sorted by name in IGV
bam igv samtools
3.3 years ago
nchuang • 200 • updated 3.3 years ago
d-cameron ♦ 2.0k
0
Votes
0
Replies
1.1k
Views
Comment: C: VIew reads sorted by name in IGV
3.3 years ago
nchuang • 200
0
Votes
0
Replies
1.1k
Views
Comment: C: VIew reads sorted by name in IGV
3.3 years ago
nchuang • 200
0
Votes
0
Replies
471
Views
Is it possible to map prior to Pregap4 and Gap4?
staden gap4 pregap4
3.4 years ago
nchuang • 200
0
Votes
0
Replies
554
Views
Assemblying Sanger traces and error threshold
sanger abi assembly
3.6 years ago
nchuang • 200
1
Vote
3
Replies
1.1k
Views
Reliable alignment tool for similar sequences of similar length other than Mummer?
alignment Mummer
4.7 years ago
nchuang • 200 • updated 3.6 years ago
novice • 920
0
Votes
1
Reply
564
Views
Jalview and Windows 10 scaling not working
jalview
3.9 years ago
nchuang • 200
0
Votes
0
Replies
961
Views
Comment: C: Edit a single base in SeqRecord object in Biopython?
4.1 years ago
nchuang • 200
0
Votes
2
Replies
961
Views
Edit a single base in SeqRecord object in Biopython?
biopython
4.1 years ago
nchuang • 200 • updated 4.1 years ago
Vijay Lakhujani 4.1k
3
Votes
8
Replies
883
Views
Popen Blat has different behavior than same syntax in shell
python blat
4.3 years ago
nchuang • 200
1
Vote
1
Reply
883
Views
Comment: C: Popen Blat has different behavior than same syntax in shell
4.3 years ago
nchuang • 200
0
Votes
0
Replies
883
Views
Comment: C: Popen Blat has different behavior than same syntax in shell
4.3 years ago
nchuang • 200
0
Votes
0
Replies
883
Views
Comment: C: Popen Blat has different behavior than same syntax in shell
4.3 years ago
nchuang • 200
1
Vote
1
Reply
883
Views
Comment: C: Popen Blat has different behavior than same syntax in shell
4.3 years ago
nchuang • 200
1
Vote
0
Replies
905
Views
Answer: A: Can NUCmer align a short sequence with a much longer sequence (local alignment)?
4.4 years ago
nchuang • 200
1
Vote
3
Replies
905
Views
Can NUCmer align a short sequence with a much longer sequence (local alignment)?
nucmer mummer local alignment
4.4 years ago
nchuang • 200
0
Votes
0
Replies
905
Views
Comment: C: Can NUCmer align a short sequence with a much longer sequence (local alignment)?
4.4 years ago
nchuang • 200
0
Votes
0
Replies
949
Views
Comment: C: Fast way to extract hg19 sequences with Biopython?
4.6 years ago
nchuang • 200
0
Votes
0
Replies
949
Views
Comment: C: Fast way to extract hg19 sequences with Biopython?
4.6 years ago
nchuang • 200
2
Votes
4
Replies
949
Views
Fast way to extract hg19 sequences with Biopython?
python biopython
4.6 years ago
nchuang • 200
0
Votes
0
Replies
840
Views
How to force NUCmer to use exact match instead of unique match?
nucmer mummer alignment
4.6 years ago
nchuang • 200
0
Votes
0
Replies
1.2k
Views
Comment: C: Using a Multiple Seq Alignment tool for pairwise alignments possible?
4.7 years ago
nchuang • 200
0
Votes
0
Replies
777
Views
Comment: C: How to visualize a set of sequence alignments that all have the same reference s
4.7 years ago
nchuang • 200
0
Votes
0
Replies
952
Views
Comment: C: Substitution matrices to score variation between protein sequences?
4.7 years ago
nchuang • 200
6
Votes
3
Replies
952
Views
Substitution matrices to score variation between protein sequences?
alignment blosum62
4.7 years ago
nchuang • 200 • updated 4.7 years ago
Steven Lakin ♦ 1.4k
0
Votes
1
Reply
777
Views
Comment: C: How to visualize a set of sequence alignments that all have the same reference s
4.7 years ago
nchuang • 200
2
Votes
4
Replies
777
Views
How to visualize a set of sequence alignments that all have the same reference sequence?
alignment
4.7 years ago
nchuang • 200 • updated 4.7 years ago
bharata1803 • 420
0
Votes
0
Replies
1.2k
Views
Comment: C: Using a Multiple Seq Alignment tool for pairwise alignments possible?
4.7 years ago
nchuang • 200
1
Vote
4
Replies
1.2k
Views
Using a Multiple Seq Alignment tool for pairwise alignments possible?
multiple sequence alignment msa alignment
4.7 years ago
nchuang • 200
0
Votes
0
Replies
1.4k
Views
Comment: C: How to create empty Biopython MultipleSeqAlignment object?
4.8 years ago
nchuang • 200
0
Votes
0
Replies
1.4k
Views
Comment: C: How to create empty Biopython MultipleSeqAlignment object?
4.8 years ago
nchuang • 200
0
Votes
3
Replies
1.4k
Views
Comment: C: How to create empty Biopython MultipleSeqAlignment object?
4.8 years ago
nchuang • 200
5
Votes
6
Replies
1.4k
Views
How to create empty Biopython MultipleSeqAlignment object?
biopython
4.8 years ago
nchuang • 200 • updated 4.8 years ago
gearoid • 200
0
Votes
0
Replies
899
Views
Comment: C: LRE3 Retrotransposon sequence
4.9 years ago
nchuang • 200
0
Votes
1
Reply
899
Views
Comment: C: LRE3 Retrotransposon sequence
4.9 years ago
nchuang • 200
0
Votes
1
Reply
899
Views
Comment: C: LRE3 Retrotransposon sequence
4.9 years ago
nchuang • 200
2
Votes
6
Replies
899
Views
LRE3 Retrotransposon sequence
L1 LINE1 LRE3 retrotransposon
4.9 years ago
nchuang • 200
0
Votes
2
Replies
747
Views
Best way to look at nonsynonymous changes in a collection of sequences?
SNP
5.1 years ago
nchuang • 200
0
Votes
1
Reply
1.9k
Views
Answer: A: Calling large indels from NGS
5.2 years ago
nchuang • 200
0
Votes
1
Reply
3.1k
Views
Answer: A: Usage of GATK Joint genotyping and filtering, or filtering and then joint genoty
5.2 years ago
nchuang • 200
1
Vote
0
Replies
5.9k
Views
Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
5.4 years ago
nchuang • 200
1
Vote
0
Replies
5.9k
Views
Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
5.4 years ago
nchuang • 200
0
Votes
1
Reply
5.9k
Views
Comment: C: Best way to convert VCF to PLINK file format and merge chromosomes?
5.4 years ago
nchuang • 200
0
Votes
0
Replies
5.5k
Views
Comment: C: GWAS: when is it appropriate to add covariates?
5.4 years ago
nchuang • 200
66 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.3