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Astalavista landscape AS gtf file output
rna-seq Astalavista
updated 13 months ago by • 0 • written 5.8 years ago by ▴ 170
0
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0
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3.8k
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Comment: C: Convert Log2 (FPKM+1) to FPKM in an expression matrix outputted from RSEM
3.5 years ago by dina.hesham139 ▴ 170
0
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1
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3.8k
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Comment: C: Convert Log2 (FPKM+1) to FPKM in an expression matrix outputted from RSEM
3.5 years ago by dina.hesham139 ▴ 170
0
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1
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3.8k
views
Comment: C: Convert Log2 (FPKM+1) to FPKM in an expression matrix outputted from RSEM
3.5 years ago by dina.hesham139 ▴ 170
3
votes
7
replies
3.8k
views
Convert Log2 (FPKM+1) to FPKM in an expression matrix outputted from RSEM
RNA-Seq RSEM Log2(x+1) revert to x
updated 3.5 years ago by 3.2k • written 3.5 years ago by ▴ 170
0
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2
replies
3.6k
views
Comment: C: Mapping percent difference between hg38 and hg19
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 170
0
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1
reply
3.6k
views
Comment: C: Mapping percent difference between hg38 and hg19
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 170
0
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1
reply
19k
views
Comment: A: HISAT2 command help
updated 4.3 years ago by 43k • written 8.2 years ago by ▴ 170
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0
replies
9.0k
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Comment: A: Minimum requirements for a laptop for RNA-seq
updated 4.3 years ago by 43k • written 8.3 years ago by ▴ 170
0
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0
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5.8k
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Answer: A: Why Does Cufflinks With Mask (-M) Option Have Lower Fpkm For Mrna Genes?
updated 4.4 years ago by 43k • written 8.3 years ago by ▴ 170
0
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2
replies
2.5k
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Comment: C: RNAseq of total RNA
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 170
0
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1
reply
2.5k
views
Comment: C: RNAseq of total RNA
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 170
0
votes
7
replies
1.7k
views
Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
RNA-Seq IsoformSwitchAnalyzeR
updated 4.8 years ago by ▴ 30 • written 5.0 years ago by ▴ 170
1
vote
4
replies
935
views
IsoformSwitchAnalyzeR and cuffdiff data error
RNA-Seq IsoformSwitchAnalyzeR
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 170
0
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0
replies
935
views
Comment: C: IsoformSwitchAnalyzeR and cuffdiff data error
4.8 years ago by dina.hesham139 ▴ 170
0
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1
reply
1.7k
views
Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
5.0 years ago by dina.hesham139 ▴ 170
0
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1
reply
5.1k
views
Comment: C: Alternative splicing analysis following kallisto?
5.0 years ago by dina.hesham139 ▴ 170
0
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5
replies
2.6k
views
No CDS in Cuffdiff output !
RNA-Seq cummeRbund cuffdif
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 170
0
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0
replies
1.5k
views
AStalavista for rice alternative splicing analysis?
RNA-Seq Alternative Splicing
5.8 years ago by dina.hesham139 ▴ 170
0
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0
replies
1.4k
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Comment: C: ASPLI (RNAseq AS) R package error
5.8 years ago by dina.hesham139 ▴ 170
0
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3
replies
1.4k
views
ASPLI (RNAseq AS) R package error
RNA-Seq R ASPLI
updated 5.8 years ago by 43k • written 5.8 years ago by ▴ 170
0
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1
reply
5.1k
views
Comment: C: Alternative splicing analysis following kallisto?
6.0 years ago by dina.hesham139 ▴ 170
10
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7
replies
5.1k
views
Alternative splicing analysis following kallisto?
RNA-Seq kallisto alternative splicing
updated 6.0 years ago by ★ 4.0k • written 6.0 years ago by ▴ 170
0
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0
replies
1.5k
views
Comment: C: RNAseq Rice: multiple condition testing and annotation
6.1 years ago by dina.hesham139 ▴ 170
0
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2
replies
1.5k
views
RNAseq Rice: multiple condition testing and annotation
RNA-Seq Rice
updated 6.1 years ago by 35k • written 6.1 years ago by ▴ 170
2
votes
3
replies
4.1k
views
"makeTxDbFromGFF" error ?!
RNA-Seq tximport
updated 6.4 years ago by 5.3k • written 6.4 years ago by ▴ 170
0
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0
replies
4.1k
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Comment: C: "makeTxDbFromGFF" error ?!
6.4 years ago by dina.hesham139 ▴ 170
1
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0
replies
3.2k
views
Comment: C: What to use after Salmon
7.1 years ago by dina.hesham139 ▴ 170
10
votes
3
replies
3.2k
views
What to use after Salmon
RNA-Seq
updated 7.1 years ago by 13k • written 7.1 years ago by ▴ 170
16
votes
7
replies
38k
views
6 follow
hg38 annotation file (gtf) UCSC format
RNA-Seq alignment
updated 21 months ago by 43k • written 8.2 years ago by ▴ 170
0
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0
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4.7k
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Comment: C: Visualization of rMATS output
8.0 years ago by dina.hesham139 ▴ 170
4
votes
3
replies
4.7k
views
Visualization of rMATS output
RNA-Seq
updated 6 months ago by • 0 • written 8.0 years ago by ▴ 170
0
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1
reply
4.1k
views
Comment: C: Annotation file (gff3) for hg38 to be used with MISO
8.1 years ago by dina.hesham139 ▴ 170
1
vote
4
replies
4.1k
views
Annotation file (gff3) for hg38 to be used with MISO
RNA-Seq
updated 8.1 years ago by 141k • written 8.1 years ago by ▴ 170
5
votes
1
reply
4.1k
views
Is there a way to add xs tag to a sam file?
rna-seq
updated 20 months ago by 43k • written 8.3 years ago by ▴ 170
0
votes
0
replies
3.0k
views
From HISAT2 to cuffdiff?
RNA-Seq
8.1 years ago by dina.hesham139 ▴ 170
0
votes
0
replies
3.6k
views
Comment: C: Mapping percent difference between hg38 and hg19
8.2 years ago by dina.hesham139 ▴ 170
0
votes
2
replies
3.6k
views
Comment: C: Mapping percent difference between hg38 and hg19
8.2 years ago by dina.hesham139 ▴ 170
1
vote
9
replies
3.6k
views
Mapping percent difference between hg38 and hg19
rna-seq alignment
8.2 years ago by dina.hesham139 ▴ 170
1
vote
1
reply
38k
views
Comment: C: hg38 annotation file (gtf) UCSC format
8.2 years ago by dina.hesham139 ▴ 170
0
votes
0
replies
1.1k
views
tophat2 incomplete mapping of reads
RNA-Seq
updated 20 months ago by 43k • written 8.4 years ago by ▴ 170
0
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1
reply
19k
views
Comment: C: HISAT2 command help
8.2 years ago by dina.hesham139 ▴ 170
0
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0
replies
19k
views
Comment: C: HISAT2 command help
8.2 years ago by dina.hesham139 ▴ 170
14
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17
replies
19k
views
6 follow
HISAT2 command help
RNA-Seq alignment
updated 3 months ago by ★ 4.3k • written 8.2 years ago by ▴ 170
0
votes
3
replies
4.6k
views
Can I use sorted bam files from STAR with Stringtie?
RNA-Seq Assembly
updated 20 months ago by 43k • written 8.3 years ago by ▴ 170
0
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0
replies
4.6k
views
Comment: A: Can I use sorted bam files from STAR with Stringtie?
8.3 years ago by dina.hesham139 ▴ 170
0
votes
1
reply
9.0k
views
Comment: C: Minimum requirements for a laptop for RNA-seq
8.3 years ago by dina.hesham139 ▴ 170
1
vote
1
reply
1.8k
views
The suitable Amazon EC2 reserved instance for analyzing RNAseq dataset
RNA-Seq
updated 19 months ago by 43k • written 8.5 years ago by ▴ 170
5
votes
7
replies
2.5k
views
RNAseq of total RNA
RNA-Seq
updated 20 months ago by 43k • written 8.4 years ago by ▴ 170
3
votes
3
replies
3.7k
views
Filtering fastq (by quality score and length), optimum criteria?
RNA-Seq galaxy
updated 20 months ago by 43k • written 8.5 years ago by ▴ 170
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