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kristoffer.vittingseerup ♦ 1.8k
Status: New
Handle: @kristoffer.vittingseerup17025
Reputation: 1800
Joined: 20 months ago
Twitter: @kvittingseerup
Last seen: 2.3 years ago
Location: European Union

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Answer: A: denovo transcriptome assembly
20 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Analysis rMATS of RNA Seq data
20 months ago
kristoffer.vittingseerup ♦ 1.8k
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1.3k
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Comment: C: Alternative splicing analysis following kallisto?
20 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: RNA seq data shows no gene expression but qPCR shows the same gene is upregulate
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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274
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Comment: C: What is the most suitable normalisation technique for RNASeq data?
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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160
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Answer: A: Analysis rMATS of RNA Seq data
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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160
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Comment: C: Analysis rMATS of RNA Seq data
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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123
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Comment: C: Salmon quasi Index upgrade
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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215
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Comment: A: de novo assembly of raw illumina reads of RNA seq experiment (24gb data)
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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196
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Comment: C: Can I convert from PSI to RPKM?
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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196
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Comment: C: Can I convert from PSI to RPKM?
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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196
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Answer: A: Can I convert from PSI to RPKM?
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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139
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Comment: C: How to group gene dataset and run t.test for each row for every gene in R?
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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181
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Answer: A: trim data with trimmomatic
21 months ago
kristoffer.vittingseerup ♦ 1.8k
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170
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Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: SpliceJumper installation issues. Particularly with make
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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1.0k
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Comment: C: SpliceJumper installation issues. Particularly with make
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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1
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170
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Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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236
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Answer: A: Stringtie: use htseq-count or prepDE.py to extract reads?
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: FastQC results interpretation
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: How to find SSR location i.e whether it is in CDS, or UTR
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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211
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Comment: C: Transcriptome analysis between two sample.
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: Can we directly use batch corrected gene expression (Bulk RNA-seq) for further d
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Mean-variance trend in voom
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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1
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354
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: Robust RNA-seq normalization
22 months ago
kristoffer.vittingseerup ♦ 1.8k
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503
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Comment: C: How to make a plot with gProfileR results?
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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326
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Comment: C: [rMATS] Number of AS Events from one sample
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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326
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Comment: C: [rMATS] Number of AS Events from one sample
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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326
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Comment: C: [rMATS] Number of AS Events from one sample
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: TopHat error: IOError [errno 2] No such file or directory: '-o'
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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326
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Answer: A: [rMATS] Number of AS Events from one sample
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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326
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Comment: C: [rMATS] Number of AS Events from one sample
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: ADVOCATE R package
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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205
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Comment: C: ADVOCATE R package
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: how to deal with batch effect in TCGA RNA-seq dataset
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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1.6k
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Comment: C: Tools To Do the Alternative Splicing Analysis
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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300
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Answer: A: When exactly is a gene "expressed"?
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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200
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Comment: C: Cufflinks transcriptome (To build or not to build?)
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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200
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Comment: C: Cufflinks transcriptome (To build or not to build?)
23 months ago
kristoffer.vittingseerup ♦ 1.8k
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443
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Answer: A: How to extract normalized matrix after using calcNormFact function (with TMM met
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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221
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Answer: A: Filtering values for two group separately
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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123
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Sample level integration of two RNASeq datasets
RNA-Seq next-gen
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: download CNV file for breast cancer BRCA from TCGA website
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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419
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Comment: C: transcripts assemble by StringTie
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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419
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Answer: A: transcripts assemble by StringTie
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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205
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Answer: A: TPM normalization of transcript
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Fastest (non-pseudo) aligner for RNA-seq illumina seq data (year 2019)
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: Get 3'UTR sequence using RNAseq read coverage
24 months ago
kristoffer.vittingseerup ♦ 1.8k
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