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kristoffer.vittingseerup ♦ 1.8k
Status: New
Handle: @kristoffer.vittingseerup17025
Reputation: 1800
Email: k*********@bio.ku.dk
Joined: 8 months ago
Twitter: @kvittingseerup
Last seen: 15 months ago
Location: European Union

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Answer: A: denovo transcriptome assembly
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Analysis rMATS of RNA Seq data
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Alternative splicing analysis following kallisto?
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: RNA seq data shows no gene expression but qPCR shows the same gene is upregulate
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: What is the most suitable normalisation technique for RNASeq data?
1 Vote | 1 Reply
8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: Analysis rMATS of RNA Seq data
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Analysis rMATS of RNA Seq data
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Salmon quasi Index upgrade
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: A: de novo assembly of raw illumina reads of RNA seq experiment (24gb data)
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Can I convert from PSI to RPKM?
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Can I convert from PSI to RPKM?
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8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: Can I convert from PSI to RPKM?
1 Vote | 1 Reply
8 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: How to group gene dataset and run t.test for each row for every gene in R?
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9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: trim data with trimmomatic
1 Vote | 1 Reply
9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
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9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: SpliceJumper installation issues. Particularly with make
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9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: SpliceJumper installation issues. Particularly with make
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9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Error IsoformSwitchAnalyzeR with kallisto data and ensembl annotation gtf
0 Votes | 1 Reply
9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: Stringtie: use htseq-count or prepDE.py to extract reads?
1 Vote | 0 Replies
9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: FastQC results interpretation
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9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: How to find SSR location i.e whether it is in CDS, or UTR
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9 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Transcriptome analysis between two sample.
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10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: Can we directly use batch corrected gene expression (Bulk RNA-seq) for further d
1 Vote | 1 Reply
10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Mean-variance trend in voom
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10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: General question about batch effect, read trimming and what to do when the adapt
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10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: Robust RNA-seq normalization
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10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: How to make a plot with gProfileR results?
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10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: [rMATS] Number of AS Events from one sample
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10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: [rMATS] Number of AS Events from one sample
1 Vote | 0 Replies
10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: [rMATS] Number of AS Events from one sample
1 Vote | 1 Reply
10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: TopHat error: IOError [errno 2] No such file or directory: '-o'
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10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: [rMATS] Number of AS Events from one sample
1 Vote | 1 Reply
10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: [rMATS] Number of AS Events from one sample
1 Vote | 0 Replies
10 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: ADVOCATE R package
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11 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: ADVOCATE R package
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11 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: how to deal with batch effect in TCGA RNA-seq dataset
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11 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Tools To Do the Alternative Splicing Analysis
1 Vote | 1 Reply
11 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: rowVars function, used in ballgown analysis not available for R 3.5.2, alternati
4 Votes | 1 Reply
11 months ago
kristoffer.vittingseerup ♦ 1.8k
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Answer: A: When exactly is a gene "expressed"?
3 Votes | 1 Reply
11 months ago
kristoffer.vittingseerup ♦ 1.8k
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Comment: C: Cufflinks transcriptome (To build or not to build?)
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11 months ago
kristoffer.vittingseerup ♦ 1.8k
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