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1
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Comment:
Comment: transcriptomic data for molecular subtyping
5 weeks ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
361
views
Answer:
Answer: How to find GO function from GEO2R results
5 weeks ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
310
views
Answer:
Answer: transcriptomic data for molecular subtyping
5 weeks ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
183
views
Answer:
Answer: Aneuploidy analysis from WGS
5 weeks ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
412
views
Comment:
Comment: Simulation of gene level methylation data
5 weeks ago by
mark.ziemann
★ 1.9k
1
vote
2
replies
531
views
Answer:
Answer: Geo2R troubleshooting
6 weeks ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
412
views
Answer:
Answer: Simulation of gene level methylation data
7 weeks ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
474
views
Answer:
Answer: Methods to analyze EM-seq data
8 weeks ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
437
views
Comment:
Comment: Error in mitch reports in R
9 weeks ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
411
views
Answer:
Answer: mitch analysis report priority by standard deviation
9 weeks ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
234
views
Answer:
Answer: How to get differntial Protein expression from protein abundance?
9 weeks ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
460
views
Comment:
Comment: Single-end strand specific Rna-Seq: Which strand that the reads from.
7 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
544
views
Comment:
Comment: ClusterProfiler GeneRatio demoninator not the same for all values
7 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
676
views
Answer:
Answer: Biological replicates in RNA-seq
10 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
445
views
Answer:
Answer: clusterprofile enrichment analysis
10 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.2k
views
Comment:
Comment: Clusterprofiler error: No gene can be mapped (different from previous posts)
14 months ago by
mark.ziemann
★ 1.9k
3
votes
1
reply
838
views
Answer:
Answer: What exactly are unmappable regions?
14 months ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
1.5k
views
Answer:
Answer: gseGO by fold-change returns errors
14 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
548
views
Comment:
Comment: How can I quantify degradation of DNA present in the sample after sequencing?
15 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
699
views
Answer:
Answer: Combining multiple datasets increases the fgsea p-value
15 months ago by
mark.ziemann
★ 1.9k
4
votes
0
replies
1.3k
views
Answer:
Answer: How to create a new gene signature from RNAseq data
20 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
537
views
Comment:
Comment: Finding the similarity between two arrays of sequences
20 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
599
views
Answer:
Answer: Horizontal Gene Tranfer/Recombination
20 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.3k
views
Comment:
Comment: feature counts invalid parameter
20 months ago by
mark.ziemann
★ 1.9k
3
votes
1
reply
588
views
Answer:
Answer: Removing or Setting pairs to NA based on conditions in another data frame (R)
20 months ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
796
views
Comment:
Comment: GSEA - Software or R
20 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
659
views
Comment:
Comment: blastn command line
20 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
701
views
Answer:
Answer: sequence error
20 months ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
1.1k
views
Answer:
Answer: GC content calculation in percentage
20 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
534
views
Answer:
Answer: Pathway Enrichment Analysis according to tumor mutation burden.
20 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: How can I do an inner_join with multiple .csv files on the linux command line?
20 months ago by
mark.ziemann
★ 1.9k
3
votes
2
replies
1.4k
views
Answer:
Answer: How can I do an inner_join with multiple .csv files on the linux command line?
20 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
683
views
Comment:
Comment: DNA sequencing from cord blood stem cells
20 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
484
views
Comment:
Comment: Differential Gene Expression of lncRNAs analysis from GENCODE reference file?
20 months ago by
mark.ziemann
★ 1.9k
2
votes
1
reply
683
views
Answer:
Answer: DNA sequencing from cord blood stem cells
20 months ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
547
views
Answer:
Answer: Accessing particular gene set with msigdbr on R
20 months ago by
mark.ziemann
★ 1.9k
4
votes
1
reply
674
views
Answer:
Answer: Repeats/Transposons finding
20 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
550
views
Answer:
Answer: How to get gene expression data from list of gene
20 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
847
views
Comment:
Comment: 3d plot in matplotlib of my own data
20 months ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
617
views
Comment:
Comment: Good statistics for RNA-seq alignments using RSEM
20 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
369
views
Answer:
Answer: Bacterial small-rna analysis
20 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
2.6k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
20 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: RepeatMasker error
20 months ago by
mark.ziemann
★ 1.9k
0
votes
1
reply
2.6k
views
Comment:
Comment: mapping reads using kallisto - rna seq analysis
20 months ago by
mark.ziemann
★ 1.9k
2
votes
0
replies
528
views
Answer:
Answer: GO Term Analysis in scRNASeq data with low number of genes expressed
20 months ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
460
views
Answer:
Answer: How to identify the genome build a dataset was aligned too?
20 months ago by
mark.ziemann
★ 1.9k
0
votes
0
replies
829
views
Comment:
Comment: NGS reads calculation
20 months ago by
mark.ziemann
★ 1.9k
1
vote
1
reply
1.4k
views
Comment:
Comment: RepeatMasker error
20 months ago by
mark.ziemann
★ 1.9k
15
votes
11
replies
4.6k
views
9 follow
Forum:
Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA
DAVID
enrichment-analysis
-geneontology
updated 10 months ago by
Ram
43k • written 2.0 years ago by
mark.ziemann
★ 1.9k
1
vote
0
replies
1.4k
views
Comment:
Comment: DMR calling for EWAS meta-analysis
2.3 years ago by
mark.ziemann
★ 1.9k
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