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4
votes
11
replies
6.3k
views
8 follow
Filtering out the spliced reads from bam file.
RNA-Seq BAM spliced-reads
updated 16 months ago by ★ 2.1k • written 7.8 years ago by ▴ 610
0
votes
0
replies
552
views
Genomic intervals to transcriptomic intervals
RNA-Seq bed
3.9 years ago by EVR ▴ 610
2
votes
1
reply
655
views
Statistically overrepresented gene types from Differentially expressed genes.
RNA-Seq next-gen gene-types enrichment
updated 4.1 years ago by 19k • written 4.1 years ago by ▴ 610
0
votes
1
reply
3.6k
views
Comment: C: If loop in snakemake
4.1 years ago by EVR ▴ 610
1
vote
1
reply
4.9k
views
Comment: C: Heatmap of Differentially Expressed Genes
updated 4.4 years ago by 43k • written 8.4 years ago by ▴ 610
1
vote
1
reply
9.7k
views
Comment: C: Finding the iIllumina index read from raw fastq file
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 610
0
votes
0
replies
1.4k
views
Comment: C: RNA half-life calculation using SlamDunk
4.5 years ago by EVR ▴ 610
0
votes
2
replies
1.5k
views
LRT test in DESeq2 gives weird volcano plot
DEseq2 LRT RNA-Seq VolcanoPlot
updated 4.6 years ago by 81k • written 4.6 years ago by ▴ 610
2
votes
0
replies
1.4k
views
Answer: A: Filter transcripts based on CDS length
4.6 years ago by EVR ▴ 610
0
votes
1
reply
1.5k
views
Comment: C: LRT test in DESeq2 giveswierd volcanplot
4.6 years ago by EVR ▴ 610
0
votes
0
replies
17k
views
Comment: C: How to determine if SRA file is single or paired end?
4.9 years ago by EVR ▴ 610
3
votes
12
replies
4.0k
views
Counting mutated reads from RNA Seq data
Mutation Variant-analysis RNA-Seq Samtools
updated 18 months ago by 43k • written 8.7 years ago by ▴ 610
0
votes
1
reply
3.0k
views
Comment: C: Aligning reads to genome together with transcriptome
updated 5.6 years ago by 43k • written 8.2 years ago by ▴ 610
3
votes
3
replies
2.8k
views
Identifying miRNA, RNA-binding sites in UTRs
UTRs miNRA RNA-binding protein
updated 6.4 years ago by ▴ 500 • written 6.4 years ago by ▴ 610
2
votes
1
reply
13k
views
Answer: A: Visualization of Gene Ontology using bubble plot.
6.4 years ago by EVR ▴ 610
0
votes
4
replies
5.1k
views
Tool for predicting RNA binding protein
RNA-Seq RNA-binding-proteins
updated 23 months ago by 43k • written 9.1 years ago by ▴ 610
0
votes
1
reply
1.8k
views
Comment: C: Merging bed intervals within a group
6.7 years ago by EVR ▴ 610
0
votes
3
replies
1.8k
views
Merging bed intervals within a group
Bedtools bedops BED
6.7 years ago by EVR ▴ 610
5
votes
10
replies
2.9k
views
6 follow
Average intron length in Drosophila melagnoster
Drosophila Intron_length
updated 6.7 years ago by ★ 1.5k • written 6.7 years ago by ▴ 610
2
votes
5
replies
3.2k
views
IGV error: Error loading SAM header: For sequence 34711, text and binary have different lengths in file.
RNA-Seq BAM IGV
updated 6.8 years ago by ▴ 310 • written 6.8 years ago by ▴ 610
0
votes
0
replies
3.2k
views
Comment: C: IGV error: Error loading SAM header: For sequence 34711, text and binary have di
6.8 years ago by EVR ▴ 610
0
votes
0
replies
3.2k
views
Comment: C: IGV error: Error loading SAM header: For sequence 34711, text and binary have di
6.8 years ago by EVR ▴ 610
0
votes
3
replies
1.5k
views
Finding fragemented transcriptome
transcriptome denovo_assembly
updated 6.9 years ago by ★ 1.5k • written 6.9 years ago by ▴ 610
0
votes
0
replies
4.7k
views
Comment: C: Normalize bedtools gene coverage by total number of reads
6.9 years ago by EVR ▴ 610
1
vote
1
reply
2.0k
views
Splitting the Spliced reads from genome Alignment
bed bedtools bedops bam Spliced_reads
6.9 years ago by EVR ▴ 610
0
votes
2
replies
2.0k
views
Answer: A: Mapping Reads to Reference Genome (Statistics)
7.0 years ago by EVR ▴ 610
0
votes
1
reply
1.8k
views
Answer: A: Smoothing densities of genes in R
7.1 years ago by EVR ▴ 610
3
votes
3
replies
2.5k
views
Indpendent Filtering in DESeq2
DESeq2 Independent filtering
updated 7.1 years ago by 104k • written 7.1 years ago by ▴ 610
0
votes
0
replies
1.6k
views
Answer: A: find the genes differentially expressed in 3 categories of samples
7.1 years ago by EVR ▴ 610
0
votes
2
replies
2.0k
views
Comment: C: Pairwise comparision in DESeq2
7.1 years ago by EVR ▴ 610
0
votes
1
reply
2.0k
views
Comment: C: Pairwise comparision in DESeq2
7.1 years ago by EVR ▴ 610
5
votes
6
replies
2.0k
views
Pairwise comparision in DESeq2
RNA-Seq DESeq2
updated 7.1 years ago by 8.6k • written 7.1 years ago by ▴ 610
0
votes
1
reply
3.2k
views
Comment: C: Finding Batch effects in RNAseq data
7.1 years ago by EVR ▴ 610
0
votes
2
replies
3.2k
views
Comment: C: Finding Batch effects in RNAseq data
7.1 years ago by EVR ▴ 610
7
votes
8
replies
3.2k
views
Finding Batch effects in RNAseq data
RNA-Seq batch-effect
7.1 years ago by EVR ▴ 610
0
votes
2
replies
4.1k
views
Comment: A: Is inspection and correction of pvalues still needed in DESeq2?
7.1 years ago by EVR ▴ 610
1
vote
0
replies
4.4k
views
Answer: A: Isoform Differential Expression Analysis
7.2 years ago by EVR ▴ 610
1
vote
0
replies
1.7k
views
Comment: C: How to extract sequences from multiple fasta files according to my list files
7.2 years ago by EVR ▴ 610
1
vote
1
reply
1.7k
views
Answer: A: How to extract sequences from multiple fasta files according to my list files
7.2 years ago by EVR ▴ 610
0
votes
0
replies
1.8k
views
Comment: C: Aligning reads to genome/transcriptome
7.2 years ago by EVR ▴ 610
0
votes
2
replies
1.8k
views
Aligning reads to genome/transcriptome
RNA-Seq Tophat2 bowtie2 bowtie
7.2 years ago by EVR ▴ 610
4
votes
6
replies
4.9k
views
Extracting entries from GTF file
GTF bed
updated 7.2 years ago by 35k • written 7.2 years ago by ▴ 610
0
votes
0
replies
4.9k
views
Comment: C: Extracting entries from GTF file
7.2 years ago by EVR ▴ 610
0
votes
1
reply
4.9k
views
Comment: C: Extracting entries from GTF file
7.2 years ago by EVR ▴ 610
0
votes
2
replies
2.4k
views
DESeq2 Normalization of time course
DESeq2 RNA-Seq Normalization
updated 7.2 years ago by ▴ 30 • written 7.3 years ago by ▴ 610
0
votes
0
replies
1.7k
views
Answer: A: Finding a downstream ORF
7.3 years ago by EVR ▴ 610
0
votes
0
replies
2.7k
views
Answer: A: error will using transdecoder.predict
7.4 years ago by EVR ▴ 610
0
votes
0
replies
2.6k
views
Answer: A: transcriptome shotgun assembly annotation
7.4 years ago by EVR ▴ 610
0
votes
0
replies
6.3k
views
Answer: A: P-value calculation for gene expression data
7.4 years ago by EVR ▴ 610
0
votes
1
reply
16k
views
Comment: C: Output from featureCounts() as input to DeSeq2
7.4 years ago by EVR ▴ 610
172 results • Page 1 of 4
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