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219
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Troubleshooting error with BSmooth: `error in serialize(data, node$con)`
message methylation sequencing R error
3 months ago by Jautis ▴ 530
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0
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306
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Comment: Comment: Match variants for allele frequency, LD score, and other features
4 months ago by Jautis ▴ 530
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0
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554
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Comment: Comment: bcftools mipileup error: format error, unexpected A at line 1
5 months ago by Jautis ▴ 530
1
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0
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497
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Answer: Answer: improving genome sequence read depth and confidence by combining sequences from
5 months ago by Jautis ▴ 530
1
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1
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306
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Match variants for allele frequency, LD score, and other features
snp
4 months ago by Jautis ▴ 530
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6
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2.4k
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Getting matrix of QDs from VCF file
vcf snp
updated 13 months ago by • 0 • written 7.5 years ago by ▴ 530
2
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1
reply
408
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Extract read position where a base is covered, and the allele at that base
samtools bam bwa
updated 10 months ago by 43k • written 17 months ago by ▴ 530
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0
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13k
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Comment: Comment: How to download dbSNP153 vcf files in hg19/GRCH37 version
17 months ago by Jautis ▴ 530
0
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1
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438
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Extract mapped SE and properly paired PE reads from a bam file
properly single bam end mapped paired
updated 23 months ago by ★ 1.8k • written 23 months ago by ▴ 530
0
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1
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973
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Answer: Answer: My PCA plot looks good but i don't have differentially expressed genes
2.1 years ago by Jautis ▴ 530
2
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0
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913
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Comment: Comment: Should I normalize the data before or after filtering to a particular cell type?
2.1 years ago by Jautis ▴ 530
4
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0
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649
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Comment: Comment: Differntial Gene Expression analysis
2.1 years ago by Jautis ▴ 530
0
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0
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660
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Comment: Comment: SNPs with multiple nucleotides
2.1 years ago by Jautis ▴ 530
2
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1
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660
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Answer: Answer: SNPs with multiple nucleotides
2.1 years ago by Jautis ▴ 530
0
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1
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616
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Comment: Comment: Capture Hi-C processing yields sparse matrices
2.1 years ago by Jautis ▴ 530
0
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0
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852
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Comment: Comment: Alternatives to TMM normalization
2.1 years ago by Jautis ▴ 530
7
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4
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852
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Alternatives to TMM normalization
voom expression R limma
2.1 years ago by Jautis ▴ 530
1
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0
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3.3k
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Answer: Answer: How can I colour UMAP by sample batches
2.3 years ago by Jautis ▴ 530
0
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0
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1.4k
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Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
2.3 years ago by Jautis ▴ 530
0
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0
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664
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Comment: Comment: Can I do differential analysis without phenodata?
2.3 years ago by Jautis ▴ 530
3
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1
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928
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Answer: Answer: mutation not in RNAseq read
2.3 years ago by Jautis ▴ 530
1
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1
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1.4k
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Comment: Comment: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
2.3 years ago by Jautis ▴ 530
0
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0
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1.9k
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Comment: Comment: Merge two vcf's, keep only intersection of REF/ALT alleles
2.3 years ago by Jautis ▴ 530
0
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0
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368
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Using bcftools to merge files of different individuals, getting only shared sites
vcf genotypes bcftools
2.3 years ago by Jautis ▴ 530
1
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2
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1.4k
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Answer: Answer: single cell RNA-seq: Is there a way to tell if one dataset is more similar to an
2.3 years ago by Jautis ▴ 530
2
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3
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1.3k
views
Error running smartpca from eigensoft: failed to create thread
pca genotypes smartpca eigensoft
2.4 years ago by Jautis ▴ 530
1
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0
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1.3k
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Comment: Comment: Error running smartpca from eigensoft: failed to create thread
2.4 years ago by Jautis ▴ 530
0
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1
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1.3k
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Comment: Comment: Error running smartpca from eigensoft: failed to create thread
2.4 years ago by Jautis ▴ 530
1
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0
replies
805
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Comment: Comment: Finding a sequence
2.4 years ago by Jautis ▴ 530
1
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1
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4.3k
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Comment: Comment: fastqc html file
2.4 years ago by Jautis ▴ 530
0
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1
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4.3k
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Comment: Comment: multiqc could not generate results
2.4 years ago by Jautis ▴ 530
0
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0
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879
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Comment: Comment: Conserved regions in multiple fasta files (multiple species)?
2.4 years ago by Jautis ▴ 530
0
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0
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4.3k
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Comment: Comment: fastqc html file
2.4 years ago by Jautis ▴ 530
2
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2
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1.1k
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Trim 100bp PE sequencing to 50bp reads
unix bash sequencing fastq
updated 2.4 years ago by 21k • written 2.4 years ago by ▴ 530
0
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0
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1.2k
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Comment: Comment: Bam file: replace low quality bases with "N"
2.5 years ago by Jautis ▴ 530
2
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2
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1.2k
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Bam file: replace low quality bases with "N"
quality base bam
2.5 years ago by Jautis ▴ 530
0
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1
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1.7k
views
Comment: Comment: limma+voom flips the sign of the effect from CPM?
2.6 years ago by Jautis ▴ 530
1
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4
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1.7k
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limma+voom flips the sign of the effect from CPM?
voom expression limma R
updated 2.6 years ago by ★ 7.0k • written 2.6 years ago by ▴ 530
0
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1
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1.7k
views
Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
2.6 years ago by Jautis ▴ 530
0
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1
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1.7k
views
Comment: Comment: voom mean-variance plot has set of genes where variance increases with expressio
2.6 years ago by Jautis ▴ 530
5
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5
replies
1.7k
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voom mean-variance plot has set of genes where variance increases with expression level
voom expression limma R
updated 2.6 years ago by ★ 7.0k • written 2.6 years ago by ▴ 530
0
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0
replies
2.2k
views
Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
3.0 years ago by Jautis ▴ 530
1
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1
reply
2.2k
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Comment: Comment: unable to impute with beagle after filtering VCF table using vcftools
3.0 years ago by Jautis ▴ 530
0
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0
replies
986
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Comment: Comment: Could someone help me check what genomic position is this variant nomenclature r
3.0 years ago by Jautis ▴ 530
0
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1
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3.0k
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Comment: Comment: How to calculate percent coverage of each read for nanopore
3.0 years ago by Jautis ▴ 530
1
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0
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3.0k
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Comment: Comment: How to calculate percent coverage of each read for nanopore
3.0 years ago by Jautis ▴ 530
0
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0
replies
1.8k
views
Comment: Comment: Cannot color cells with 0 expression in certain color
3.0 years ago by Jautis ▴ 530
0
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0
replies
583
views
Calculating Fst from low coverage data using genotype likelihoods
vcftools fst population_differentiation
3.0 years ago by Jautis ▴ 530
0
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0
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4.1k
views
Comment: C: Calculating Tajima's D from SNP frequency data
3.3 years ago by Jautis ▴ 530
0
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0
replies
3.8k
views
Comment: C: A strange R limma voom function mean-variance trend
3.3 years ago by Jautis ▴ 530
150 results • Page 1 of 3
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