Biostar Beta. Not for public use.
F ♦ 3.4k
Status: New
Handle: @F15530
Reputation: 3410
Email: f*********@yahoo.com
Joined: 14 months ago
Last seen: 14 months ago
Location: Iran

I am learning everyday

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1
Vote
8
Replies
2.5k
Views
Downloading SRA data using the SRA Toolkit
RNA-Seq rna-seq sequencing
5.2 years ago
F ♦ 3.4k • updated 14 months ago
Andy.Judell • 0
6
Votes
9
Replies
289
Views
Getting this specific information from gene- annotation enrichment analysis
DAVID R PANTHER annotation
14 months ago
F ♦ 3.4k • updated 14 months ago
annie.wong • 20
3
Votes
3
Replies
187
Views
Plotting heatmap by binary values
r heatmap
14 months ago
F ♦ 3.4k
0
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0
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261
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Comment: C: How I reproduce such a plot
14 months ago
F ♦ 3.4k
0
Votes
2
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261
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Comment: C: How I reproduce such a plot
14 months ago
F ♦ 3.4k
0
Votes
1
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261
Views
Comment: C: How I reproduce such a plot
14 months ago
F ♦ 3.4k
4
Votes
11
Replies
261
Views
How I reproduce such a plot
Pathway r single cell RNA-seq Protomics
14 months ago
F ♦ 3.4k • updated 14 months ago
SMK ♦ 1.3k
0
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0
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261
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Comment: C: How I reproduce such a plot
14 months ago
F ♦ 3.4k
0
Votes
1
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261
Views
Comment: C: How I reproduce such a plot
14 months ago
F ♦ 3.4k
0
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0
Replies
265
Views
Comment: C: How to annotate structural variants in VCF with esv/nsv identifiers
14 months ago
F ♦ 3.4k
0
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0
Replies
289
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Comment: A: Getting this specific information from gene- annotation enrichment analysis
14 months ago
F ♦ 3.4k
0
Votes
1
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289
Views
Comment: C: Getting this specific information from gene- annotation enrichment analysis
14 months ago
F ♦ 3.4k
0
Votes
1
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289
Views
Comment: C: Getting this specific information from gene- annotation enrichment analysis
14 months ago
F ♦ 3.4k
0
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0
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129
Views
Best way to combine single cell RNA-seq and proteomics
Single cell RNA-seq Proteomics R
14 months ago
F ♦ 3.4k
25
Votes
19
Replies
507
Views
Getting the number of SNPs in some ranges
R wgs CNV LINUX
15 months ago
F ♦ 3.4k • updated 15 months ago
RamRS 21k
0
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0
Replies
176
Views
Answer: A: Creating marker file for GICTIC2
15 months ago
F ♦ 3.4k • updated 15 months ago
RamRS 21k
0
Votes
2
Replies
176
Views
Creating marker file for GICTIC2
GISTIC2 Copy number Segmentation WGS
15 months ago
F ♦ 3.4k • updated 15 months ago
RamRS 21k
0
Votes
1
Reply
1.3k
Views
Comment: C: GISTIC 2.0 all threshold file versus genome browser
15 months ago
F ♦ 3.4k
0
Votes
1
Reply
215
Views
Comment: C: Running time in different callers
15 months ago
F ♦ 3.4k
1
Vote
4
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215
Views
Running time in different callers
mutect varscan SNV WGS
15 months ago
F ♦ 3.4k
1
Vote
2
Replies
507
Views
Answer: A: Getting the number of SNPs in some ranges
15 months ago
F ♦ 3.4k • updated 15 months ago
RamRS 21k
0
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2
Replies
507
Views
Comment: C: Getting the number of SNPs in some ranges
15 months ago
F ♦ 3.4k
0
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2
Replies
507
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Comment: C: Getting the number of SNPs in some ranges
15 months ago
F ♦ 3.4k
0
Votes
1
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241
Views
Comment: C: Creating a PON in GATK
15 months ago
F ♦ 3.4k
0
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1
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241
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Comment: C: Creating a PON in GATK
15 months ago
F ♦ 3.4k
2
Votes
5
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241
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Creating a PON in GATK
GATK wgs mutect2
15 months ago
F ♦ 3.4k
0
Votes
1
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507
Views
Comment: C: Getting the number of SNPs in some ranges
15 months ago
F ♦ 3.4k
1
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1
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6.8k
Views
Comment: C: R - removing column names from matrix
4.6 years ago
F ♦ 3.4k • updated 16 months ago
RamRS 21k
5
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0
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6.8k
Views
Answer: A: R - removing column names from matrix
4.6 years ago
F ♦ 3.4k • updated 16 months ago
RamRS 21k
36
Votes
15
Replies
6.8k
Views
R - removing column names from matrix
R
4.6 years ago
F ♦ 3.4k • updated 16 months ago
RamRS 21k
0
Votes
0
Replies
402
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Comment: C: Problem with vcf2maf
16 months ago
F ♦ 3.4k
0
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1
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402
Views
Comment: C: Problem with vcf2maf
16 months ago
F ♦ 3.4k
0
Votes
1
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402
Views
Comment: C: Problem with vcf2maf
16 months ago
F ♦ 3.4k
0
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1
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402
Views
Comment: C: Problem with vcf2maf
16 months ago
F ♦ 3.4k
6
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8
Replies
402
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Problem with vcf2maf
maf vcf wgs path
16 months ago
F ♦ 3.4k • updated 16 months ago
RamRS 21k
0
Votes
0
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257
Views
Comment: C: Problem with .vcf annovar
16 months ago
F ♦ 3.4k
1
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3
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257
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Problem with .vcf annovar
vcf annovar maf
16 months ago
F ♦ 3.4k • updated 16 months ago
onemoreuser • 10
1
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0
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257
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Answer: A: Problem with .vcf annovar
16 months ago
F ♦ 3.4k
0
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0
Replies
260
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Comment: C: Ensembl gene annotation GRCh37.87
16 months ago
F ♦ 3.4k
0
Votes
1
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260
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Comment: C: Ensembl gene annotation GRCh37.87
16 months ago
F ♦ 3.4k
0
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0
Replies
260
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Comment: C: Ensembl gene annotation GRCh37.87
16 months ago
F ♦ 3.4k
0
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1
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260
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Comment: C: Ensembl gene annotation GRCh37.87
16 months ago
F ♦ 3.4k
8
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9
Replies
260
Views
Ensembl gene annotation GRCh37.87
RNA-Seq ensembl salmon
16 months ago
F ♦ 3.4k • updated 16 months ago
genomax 68k
0
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0
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5.7k
Views
Comment: C: how to choose optimal K in Consensus clustering
16 months ago
F ♦ 3.4k
19
Votes
16
Replies
1.9k
Views
mireap procedure short tutorial
miRNA mireap
3.9 years ago
F ♦ 3.4k • updated 16 months ago
b.d237 • 100
0
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0
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2.1k
Views
Comment: C: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
16 months ago
F ♦ 3.4k
0
Votes
0
Replies
454
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Comment: C: Getting read depth for normal and tumour
16 months ago
F ♦ 3.4k
0
Votes
0
Replies
454
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Comment: C: Getting read depth for normal and tumour
16 months ago
F ♦ 3.4k
0
Votes
1
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454
Views
Comment: C: Getting read depth for normal and tumour
16 months ago
F ♦ 3.4k
0
Votes
1
Reply
454
Views
Comment: C: Getting read depth for normal and tumour
16 months ago
F ♦ 3.4k
0
Votes
2
Replies
454
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Comment: C: Getting read depth for normal and tumour
16 months ago
F ♦ 3.4k
0
Votes
2
Replies
454
Views
Comment: C: Getting read depth for normal and tumour
16 months ago
F ♦ 3.4k
0
Votes
1
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454
Views
Comment: C: Getting read depth for normal and tumour
16 months ago
F ♦ 3.4k
0
Votes
2
Replies
454
Views
Comment: C: Getting read depth for normal and tumour
16 months ago
F ♦ 3.4k
8
Votes
20
Replies
454
Views
Getting read depth for normal and tumour
R WGS vcf
16 months ago
F ♦ 3.4k
2
Votes
1
Reply
367
Views
Answer: C: Extracting this data frame from a .vcf file
16 months ago
F ♦ 3.4k
1
Vote
0
Replies
259
Views
Answer: A: Extracting information from gatk VariantFiltration output
16 months ago
F ♦ 3.4k
1
Vote
1
Reply
259
Views
Extracting information from gatk VariantFiltration output
gatk WGS
16 months ago
F ♦ 3.4k
0
Votes
1
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3.6k
Views
Comment: C: How to extract the list of genes from TCGA CNV data
16 months ago
F ♦ 3.4k
0
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0
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1.1k
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Comment: C: how can i convert position to SNP ID
16 months ago
F ♦ 3.4k
0
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1
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1.1k
Views
Comment: C: how can i convert position to SNP ID
16 months ago
F ♦ 3.4k
0
Votes
1
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1.1k
Views
Comment: C: how can i convert position to SNP ID
16 months ago
F ♦ 3.4k
0
Votes
1
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1.1k
Views
Comment: C: how can i convert position to SNP ID
16 months ago
F ♦ 3.4k
0
Votes
1
Reply
189
Views
Comment: C: Visualizing called somatic copy number variation
16 months ago
F ♦ 3.4k
2
Votes
3
Replies
189
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Visualizing called somatic copy number variation
WGS CNV
16 months ago
F ♦ 3.4k
0
Votes
1
Reply
246
Views
Comment: C: Do you recommend marking duplicates for WGS or WES?
16 months ago
F ♦ 3.4k
0
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0
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211
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Comment: C: Non zero existing of scatngs
16 months ago
F ♦ 3.4k
0
Votes
1
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211
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Comment: C: Non zero existing of scatngs
16 months ago
F ♦ 3.4k
0
Votes
1
Reply
211
Views
Comment: C: Non zero existing of scatngs
16 months ago
F ♦ 3.4k
4
Votes
6
Replies
211
Views
Non zero existing of scatngs
WGS software error scatngs
16 months ago
F ♦ 3.4k
0
Votes
1
Reply
16k
Views
Comment: C: the latest human reference genome fasta file
16 months ago
F ♦ 3.4k
0
Votes
0
Replies
357
Views
Comment: C: How I deal with this big data
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
357
Views
Comment: C: How I deal with this big data
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
357
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Comment: C: How I deal with this big data
17 months ago
F ♦ 3.4k
0
Votes
2
Replies
357
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Comment: C: How I deal with this big data
17 months ago
F ♦ 3.4k
0
Votes
1
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357
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Comment: C: How I deal with this big data
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
357
Views
Comment: C: How I deal with this big data
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
357
Views
Comment: C: How I deal with this big data
17 months ago
F ♦ 3.4k
0
Votes
2
Replies
357
Views
Comment: C: How I deal with this big data
17 months ago
F ♦ 3.4k
13
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23
Replies
357
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How I deal with this big data
WGS transfer
17 months ago
F ♦ 3.4k • updated 17 months ago
ATpoint 17k
0
Votes
0
Replies
224
Views
Comment: C: Converting this matrix to gene name or symbole
17 months ago
F ♦ 3.4k
0
Votes
0
Replies
224
Views
Comment: C: Converting this matrix to gene name or symbole
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
224
Views
Comment: C: Converting this matrix to gene name or symbole
17 months ago
F ♦ 3.4k
5
Votes
7
Replies
224
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Converting this matrix to gene name or symbole
Ensembl ID HTSeq RNA-Seq
17 months ago
F ♦ 3.4k
0
Votes
0
Replies
230
Views
Comment: C: Downloading public RNA-seq raw read counts
17 months ago
F ♦ 3.4k
0
Votes
0
Replies
230
Views
Comment: C: Downloading public RNA-seq raw read counts
17 months ago
F ♦ 3.4k
1
Vote
3
Replies
230
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Downloading public RNA-seq raw read counts
RNA-Seq TCGA firehose NIH
17 months ago
F ♦ 3.4k
0
Votes
0
Replies
13k
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Comment: C: Tutorial: Analyze exome Copy number variation (CNV) in single patient or in popu
17 months ago
F ♦ 3.4k
0
Votes
0
Replies
301
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Comment: C: Installation error CNVkit: could not find the executable 'Rscript'
17 months ago
F ♦ 3.4k
5
Votes
12
Replies
301
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Installation error CNVkit: could not find the executable 'Rscript'
CNVkit
17 months ago
F ♦ 3.4k
0
Votes
0
Replies
301
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Comment: C: I am not able to install CNVkit
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
301
Views
Comment: C: I am not able to install CNVkit
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
301
Views
Comment: C: I am not able to install CNVkit
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
301
Views
Comment: C: I am not able to install CNVkit
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
301
Views
Comment: C: I am not able to install CNVkit
17 months ago
F ♦ 3.4k
0
Votes
0
Replies
590
Views
Comment: C: dNdScv error: Zero coding substitutions found in this dataset
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
287
Views
Comment: C: Splitting .vcf file
17 months ago
F ♦ 3.4k
0
Votes
3
Replies
287
Views
Splitting .vcf file
WGS vcftools
17 months ago
F ♦ 3.4k
0
Votes
1
Reply
2.5k
Views
Comment: C: Downloading SRA data using the SRA Toolkit
17 months ago
F ♦ 3.4k • updated 17 months ago
ATpoint 17k
0
Votes
9
Replies
323
Views
Removing or not removing the duplicates in .bam file
picard GATK RNA-Seq WGS
17 months ago
F ♦ 3.4k
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