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F ♦ 3.4k
Status: New
Handle: @F15530
Reputation: 3410
Email: f*********@yahoo.com
Joined: 10 months ago
Last seen: 10 months ago
Location: Iran

I am learning everyday

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1
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8
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2.5k
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Downloading SRA data using the SRA Toolkit
RNA-Seq rna-seq sequencing
4.9 years ago
F ♦ 3.4k • updated 10 months ago
Andy.Judell • 0
6
Votes
9
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258
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Getting this specific information from gene- annotation enrichment analysis
DAVID R PANTHER annotation
10 months ago
F ♦ 3.4k • updated 10 months ago
annie.wong • 20
3
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3
Replies
161
Views
Plotting heatmap by binary values
r heatmap
10 months ago
F ♦ 3.4k
0
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0
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233
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C: How I reproduce such a plot
10 months ago
F ♦ 3.4k
0
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2
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233
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C: How I reproduce such a plot
10 months ago
F ♦ 3.4k
0
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1
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233
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C: How I reproduce such a plot
10 months ago
F ♦ 3.4k
4
Votes
11
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233
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How I reproduce such a plot
Pathway r single cell RNA-seq Protomics
10 months ago
F ♦ 3.4k • updated 10 months ago
SMK ♦ 1.3k
0
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0
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233
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C: How I reproduce such a plot
10 months ago
F ♦ 3.4k
0
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1
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233
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C: How I reproduce such a plot
10 months ago
F ♦ 3.4k
0
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0
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245
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C: How to annotate structural variants in VCF with esv/nsv identifiers
10 months ago
F ♦ 3.4k
0
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0
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258
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A: Getting this specific information from gene- annotation enrichment analysis
10 months ago
F ♦ 3.4k
0
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1
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258
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C: Getting this specific information from gene- annotation enrichment analysis
10 months ago
F ♦ 3.4k
0
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1
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258
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C: Getting this specific information from gene- annotation enrichment analysis
10 months ago
F ♦ 3.4k
0
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0
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117
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Best way to combine single cell RNA-seq and proteomics
Single cell RNA-seq Proteomics R
10 months ago
F ♦ 3.4k
25
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19
Replies
473
Views
Getting the number of SNPs in some ranges
R wgs CNV LINUX
11 months ago
F ♦ 3.4k • updated 11 months ago
RamRS 21k
0
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0
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162
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A: Creating marker file for GICTIC2
11 months ago
F ♦ 3.4k • updated 11 months ago
RamRS 21k
0
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2
Replies
162
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Creating marker file for GICTIC2
GISTIC2 Copy number Segmentation WGS
11 months ago
F ♦ 3.4k • updated 11 months ago
RamRS 21k
0
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1
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1.2k
Views
C: GISTIC 2.0 all threshold file versus genome browser
11 months ago
F ♦ 3.4k
0
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1
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195
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C: Running time in different callers
11 months ago
F ♦ 3.4k
1
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4
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195
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Running time in different callers
mutect varscan SNV WGS
11 months ago
F ♦ 3.4k
1
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2
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473
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A: Getting the number of SNPs in some ranges
11 months ago
F ♦ 3.4k • updated 11 months ago
RamRS 21k
0
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2
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473
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C: Getting the number of SNPs in some ranges
11 months ago
F ♦ 3.4k
0
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2
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473
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C: Getting the number of SNPs in some ranges
11 months ago
F ♦ 3.4k
0
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1
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218
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C: Creating a PON in GATK
11 months ago
F ♦ 3.4k
0
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1
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218
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C: Creating a PON in GATK
11 months ago
F ♦ 3.4k
2
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5
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218
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Creating a PON in GATK
GATK wgs mutect2
11 months ago
F ♦ 3.4k
0
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1
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473
Views
C: Getting the number of SNPs in some ranges
11 months ago
F ♦ 3.4k
1
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1
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6.8k
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C: R - removing column names from matrix
4.2 years ago
F ♦ 3.4k • updated 11 months ago
RamRS 21k
5
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0
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6.8k
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A: R - removing column names from matrix
4.2 years ago
F ♦ 3.4k • updated 11 months ago
RamRS 21k
36
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15
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6.8k
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R - removing column names from matrix
R
4.2 years ago
F ♦ 3.4k • updated 11 months ago
RamRS 21k
0
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0
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334
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C: Problem with vcf2maf
11 months ago
F ♦ 3.4k
0
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1
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334
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C: Problem with vcf2maf
11 months ago
F ♦ 3.4k
0
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1
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334
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C: Problem with vcf2maf
11 months ago
F ♦ 3.4k
0
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1
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334
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C: Problem with vcf2maf
11 months ago
F ♦ 3.4k
6
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8
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334
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Problem with vcf2maf
maf vcf wgs path
11 months ago
F ♦ 3.4k • updated 11 months ago
RamRS 21k
0
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0
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242
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C: Problem with .vcf annovar
12 months ago
F ♦ 3.4k
1
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3
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242
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Problem with .vcf annovar
vcf annovar maf
12 months ago
F ♦ 3.4k • updated 12 months ago
onemoreuser • 10
1
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0
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242
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A: Problem with .vcf annovar
12 months ago
F ♦ 3.4k
0
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0
Replies
243
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C: Ensembl gene annotation GRCh37.87
12 months ago
F ♦ 3.4k
0
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1
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243
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C: Ensembl gene annotation GRCh37.87
12 months ago
F ♦ 3.4k
0
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0
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243
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C: Ensembl gene annotation GRCh37.87
12 months ago
F ♦ 3.4k
0
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1
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243
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C: Ensembl gene annotation GRCh37.87
12 months ago
F ♦ 3.4k
8
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9
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243
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Ensembl gene annotation GRCh37.87
RNA-Seq ensembl salmon
12 months ago
F ♦ 3.4k • updated 12 months ago
genomax 68k
0
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0
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5.6k
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C: how to choose optimal K in Consensus clustering
12 months ago
F ♦ 3.4k
19
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16
Replies
1.9k
Views
mireap procedure short tutorial
miRNA mireap
3.5 years ago
F ♦ 3.4k • updated 12 months ago
b.d237 • 100
0
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0
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2.0k
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C: Who are the Greatest Bioinformaticians Of All Time (GBOAT)
12 months ago
F ♦ 3.4k
0
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0
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424
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C: Getting read depth for normal and tumour
12 months ago
F ♦ 3.4k
0
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0
Replies
424
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C: Getting read depth for normal and tumour
12 months ago
F ♦ 3.4k
0
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1
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424
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C: Getting read depth for normal and tumour
12 months ago
F ♦ 3.4k
0
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1
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424
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C: Getting read depth for normal and tumour
12 months ago
F ♦ 3.4k
0
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2
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424
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C: Getting read depth for normal and tumour
12 months ago
F ♦ 3.4k
0
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2
Replies
424
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C: Getting read depth for normal and tumour
12 months ago
F ♦ 3.4k
0
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1
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424
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C: Getting read depth for normal and tumour
12 months ago
F ♦ 3.4k
0
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2
Replies
424
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C: Getting read depth for normal and tumour
12 months ago
F ♦ 3.4k
8
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20
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424
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Getting read depth for normal and tumour
R WGS vcf
12 months ago
F ♦ 3.4k
2
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1
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358
Views
C: Extracting this data frame from a .vcf file
12 months ago
F ♦ 3.4k
1
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0
Replies
246
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A: Extracting information from gatk VariantFiltration output
12 months ago
F ♦ 3.4k
1
Vote
1
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246
Views
Extracting information from gatk VariantFiltration output
gatk WGS
12 months ago
F ♦ 3.4k
0
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1
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3.5k
Views
C: How to extract the list of genes from TCGA CNV data
12 months ago
F ♦ 3.4k
0
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0
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1.1k
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C: how can i convert position to SNP ID
12 months ago
F ♦ 3.4k
0
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1
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1.1k
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C: how can i convert position to SNP ID
12 months ago
F ♦ 3.4k
0
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1
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1.1k
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C: how can i convert position to SNP ID
12 months ago
F ♦ 3.4k
0
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1
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1.1k
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C: how can i convert position to SNP ID
12 months ago
F ♦ 3.4k
0
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1
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172
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C: Visualizing called somatic copy number variation
12 months ago
F ♦ 3.4k
2
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3
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172
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Visualizing called somatic copy number variation
WGS CNV
12 months ago
F ♦ 3.4k
0
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1
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230
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C: Do you recommend marking duplicates for WGS or WES?
12 months ago
F ♦ 3.4k
0
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0
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196
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C: Non zero existing of scatngs
12 months ago
F ♦ 3.4k
0
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1
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196
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C: Non zero existing of scatngs
12 months ago
F ♦ 3.4k
0
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1
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196
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C: Non zero existing of scatngs
12 months ago
F ♦ 3.4k
4
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6
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196
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Non zero existing of scatngs
WGS software error scatngs
12 months ago
F ♦ 3.4k
0
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1
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16k
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C: the latest human reference genome fasta file
12 months ago
F ♦ 3.4k
0
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0
Replies
332
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C: How I deal with this big data
12 months ago
F ♦ 3.4k
0
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1
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332
Views
C: How I deal with this big data
12 months ago
F ♦ 3.4k
0
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1
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332
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C: How I deal with this big data
12 months ago
F ♦ 3.4k
0
Votes
2
Replies
332
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C: How I deal with this big data
12 months ago
F ♦ 3.4k
0
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1
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332
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C: How I deal with this big data
12 months ago
F ♦ 3.4k
0
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1
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332
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C: How I deal with this big data
12 months ago
F ♦ 3.4k
0
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1
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332
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C: How I deal with this big data
12 months ago
F ♦ 3.4k
0
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2
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332
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C: How I deal with this big data
12 months ago
F ♦ 3.4k
13
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23
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332
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How I deal with this big data
WGS transfer
12 months ago
F ♦ 3.4k • updated 12 months ago
ATpoint 17k
0
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0
Replies
207
Views
C: Converting this matrix to gene name or symbole
12 months ago
F ♦ 3.4k
0
Votes
0
Replies
207
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C: Converting this matrix to gene name or symbole
12 months ago
F ♦ 3.4k
0
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1
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207
Views
C: Converting this matrix to gene name or symbole
12 months ago
F ♦ 3.4k
5
Votes
7
Replies
207
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Converting this matrix to gene name or symbole
Ensembl ID HTSeq RNA-Seq
12 months ago
F ♦ 3.4k
0
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0
Replies
216
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C: Downloading public RNA-seq raw read counts
12 months ago
F ♦ 3.4k
0
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0
Replies
216
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C: Downloading public RNA-seq raw read counts
13 months ago
F ♦ 3.4k
1
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3
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216
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Downloading public RNA-seq raw read counts
RNA-Seq TCGA firehose NIH
13 months ago
F ♦ 3.4k
0
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0
Replies
13k
Views
C: Tutorial: Analyze exome Copy number variation (CNV) in single patient or in popu
13 months ago
F ♦ 3.4k
0
Votes
0
Replies
284
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C: Installation error CNVkit: could not find the executable 'Rscript'
13 months ago
F ♦ 3.4k
5
Votes
12
Replies
284
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Installation error CNVkit: could not find the executable 'Rscript'
CNVkit
13 months ago
F ♦ 3.4k
0
Votes
0
Replies
284
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C: I am not able to install CNVkit
13 months ago
F ♦ 3.4k
0
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1
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284
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C: I am not able to install CNVkit
13 months ago
F ♦ 3.4k
0
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1
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284
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C: I am not able to install CNVkit
13 months ago
F ♦ 3.4k
0
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1
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284
Views
C: I am not able to install CNVkit
13 months ago
F ♦ 3.4k
0
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1
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284
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C: I am not able to install CNVkit
13 months ago
F ♦ 3.4k
0
Votes
0
Replies
552
Views
C: dNdScv error: Zero coding substitutions found in this dataset
13 months ago
F ♦ 3.4k
0
Votes
1
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272
Views
C: Splitting .vcf file
13 months ago
F ♦ 3.4k
0
Votes
3
Replies
272
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Splitting .vcf file
WGS vcftools
13 months ago
F ♦ 3.4k
0
Votes
1
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2.5k
Views
C: Downloading SRA data using the SRA Toolkit
13 months ago
F ♦ 3.4k • updated 13 months ago
ATpoint 17k
0
Votes
9
Replies
313
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Removing or not removing the duplicates in .bam file
picard GATK RNA-Seq WGS
13 months ago
F ♦ 3.4k
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