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Antonio R. Franco ♦ 4.0k
Status: New
Handle: @Antonio R. Franco13770
Reputation: 4040
Email: a******@uco.es
Joined: 15 months ago
Last seen: 16 months ago
Location: Spain. Universidad de Córdoba

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1
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197
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Answer: A: How can I compare two reference genome
16 months ago
Antonio R. Franco ♦ 4.0k
2
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1
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6.8k
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Answer: A: R - removing column names from matrix
4.7 years ago
Antonio R. Franco ♦ 4.0k • updated 17 months ago
RamRS 21k
2
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1
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6.8k
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Comment: C: R - removing column names from matrix
4.7 years ago
Antonio R. Franco ♦ 4.0k • updated 17 months ago
RamRS 21k
2
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1
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6.8k
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Comment: C: R - removing column names from matrix
4.7 years ago
Antonio R. Franco ♦ 4.0k • updated 17 months ago
RamRS 21k
1
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0
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906
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Answer: A: Integrating DMR data
18 months ago
Antonio R. Franco ♦ 4.0k
0
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4.4k
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Answer: A: Any Free Software Similar To Sequencher?
18 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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227
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Answer: A: How to remove the contaminant reads from metagenome sequencing
19 months ago
Antonio R. Franco ♦ 4.0k
1
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176
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Answer: A: How to join DESeq2 object "res" to the gene annotation with dplyr?
19 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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241
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Comment: C: How to remove bam files that don't contain matching reads
19 months ago
Antonio R. Franco ♦ 4.0k
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306
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Comment: C: Difficulty in Host removal by Bowtie2,samtools and bedtools
19 months ago
Antonio R. Franco ♦ 4.0k
1
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306
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Answer: A: Difficulty in Host removal by Bowtie2,samtools and bedtools
19 months ago
Antonio R. Franco ♦ 4.0k
1
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104k
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Comment: C: How To Update R In Ubuntu ?
4.4 years ago
Antonio R. Franco ♦ 4.0k • updated 19 months ago
RamRS 21k
0
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1
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3.9k
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Comment: C: normalization with DEseq2
5.0 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
0
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1
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3.9k
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Comment: C: normalization with DEseq2
5.0 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
1
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1
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3.9k
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Comment: C: normalization with DEseq2
5.0 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
1
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1
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3.9k
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Comment: C: normalization with DEseq2
5.0 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
1
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1
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3.9k
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Comment: C: normalization with DEseq2
5.0 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
2
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1
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3.9k
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Answer: A: normalization with DEseq2
5.0 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
2
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0
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266
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Answer: A: FastQ ColorSpace to BaseSpace format in 2018
23 months ago
Antonio R. Franco ♦ 4.0k
0
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219
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Answer: A: weird number in log2FC
23 months ago
Antonio R. Franco ♦ 4.0k
0
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756
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Comment: C: Orientation of PE reads a review of --fr --ff and --rf meanings
23 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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465
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Comment: C: Installing samtools from sourceforge
23 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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465
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Answer: A: Installing samtools from sourceforge
23 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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329
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Answer: A: Per base GC content with a shoulder after adapter removal and trimming
24 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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309
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Comment: C: CpG Methylation data from PacBio sequencing
24 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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309
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Answer: A: CpG Methylation data from PacBio sequencing
24 months ago
Antonio R. Franco ♦ 4.0k
2
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532
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Answer: A: design matrix for time point comparision [1 treatment] in time course RNA Seq -
24 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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315
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Answer: A: How to use simultaneously long and short reads to assemble de novo a transcript
2.0 years ago
Antonio R. Franco ♦ 4.0k
3
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425
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Answer: A: Organizing tools/ software
2.0 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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1.5k
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Comment: C: SE reads in fr-firststrand, fr-secondstrand
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
1
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1
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1.5k
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Answer: A: SE reads in fr-firststrand, fr-secondstrand
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
1
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310
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Answer: A: sequence alignment of protein sequence
2.0 years ago
Antonio R. Franco ♦ 4.0k
0
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4.5k
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Comment: C: Problem In running read.Table function in R
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
0
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1
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4.5k
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Comment: C: Problem In running read.Table function in R
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
2
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1
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4.5k
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Answer: A: Problem In running read.Table function in R
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
0
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0
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1.4k
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Answer: A: blast running for several splitted query
5.4 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
1
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1
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578
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Comment: C: BLAST multiple database against each other
2.0 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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5.3k
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Answer: A: Best trimming tool
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
0
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0
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11k
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Comment: C: Heatmap.2 R for differentially expressed genes DeSEQ2
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
0
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0
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1.3k
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Answer: A: Find patterns in DNA sequence
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
1
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1
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610
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Answer: A: returning the gene name back to my matrix
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
1
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1
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610
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Answer: A: returning the gene name back to my matrix
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
2
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1
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610
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Answer: A: returning the gene name back to my matrix
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
RamRS 21k
0
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0
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30k
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Comment: C: Extracting Sequence From A 3Gb Fasta File
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.1 years ago
RamRS 21k
0
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3
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869
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How to order a gff3 file by coordinates
gff3 ordering
2.6 years ago
Antonio R. Franco ♦ 4.0k • updated 2.2 years ago
EagleEye 6.4k
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2
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416
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Comment: C: micro-array analysis without FoldChange
2.2 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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573
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Comment: A: Conversion of Fasta file
2.2 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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411
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Answer: A: Exonic SNPs extraction
2.2 years ago
Antonio R. Franco ♦ 4.0k
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0
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1.1k
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Answer: A: rRNA remove from RNAseq data
2.2 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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1.2k
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Comment: A: De novo plant genome assembly
2.2 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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408
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Answer: A: how can we create heat map for only upregulated gene list
2.2 years ago
Antonio R. Franco ♦ 4.0k
5
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3
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306
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Asking about programs and methods to get gene methylation profiles
methylation profiles
2.3 years ago
Antonio R. Franco ♦ 4.0k • updated 2.3 years ago
igor 7.7k
1
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0
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589
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Answer: A: Salmon choosing library type
2.3 years ago
Antonio R. Franco ♦ 4.0k
3
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1
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1.2k
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Answer: A: What are the best tools for visualizing DNA methylation result?
2.3 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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4.3k
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Answer: A: Gallery: Computational tools for DNA methylation
2.3 years ago
Antonio R. Franco ♦ 4.0k
1
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0
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1.8k
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Answer: A: RPKM to TPM conversion?
2.3 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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721
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Comment: A: Extract uniquely mapped reads from one species
2.3 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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859
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Answer: A: Could somebody suggest free pathway visualization tool for omics data from plant
2.3 years ago
Antonio R. Franco ♦ 4.0k
2
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0
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889
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Answer: A: The best way to produce gene body coverage
2.3 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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619
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Comment: C: get identical number of read1 and read2 aligned
2.3 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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619
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Comment: C: get identical number of read1 and read2 aligned
2.3 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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619
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Answer: A: how can I get identical read1 and read2?
2.3 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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404
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Answer: A: What is the exact number of gene that we can detect from differentially expresse
2.3 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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606
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Need help with methylation bias
bismark bwameth methylation epigenesis
2.4 years ago
Antonio R. Franco ♦ 4.0k • updated 2.4 years ago
Devon Ryan 90k
0
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1
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2.4k
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Comment: C: Interpreting distance from clustal omega
2.4 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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2.4k
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Answer: A: Interpreting distance from clustal omega
2.4 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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2.4k
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Comment: C: Interpreting distance from clustal omega
2.4 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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2.4k
Views
Answer: A: Interpreting distance from clustal omega
2.4 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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2.4k
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Comment: C: Interpreting distance from clustal omega
2.4 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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706
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Clustal Omega and bootstrapping
clustal iq-tree bootstrap alignment
2.5 years ago
Antonio R. Franco ♦ 4.0k
1
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0
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897
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Answer: A: short RNA reads alignment
2.5 years ago
Antonio R. Franco ♦ 4.0k
2
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0
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892
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Comment: C: Remove singletons from bam
2.5 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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892
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Answer: A: Remove singletons from bam
2.5 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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279
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Answer: A: Preparing primary assembly in RNAseq
2.5 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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324
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Can you get information about variance of microarrays experiments from a MA plot ?
MA plot microarray
2.5 years ago
Antonio R. Franco ♦ 4.0k • updated 2.5 years ago
Devon Ryan 90k
0
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0
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2.2k
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Comment: C: Big news from Microsoft. BASH on windows.
2.5 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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512
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Comment: C: Is it normal a substantial reduction of BAM files after ordering ?
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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512
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Answer: A: Is it normal a substantial reduction of BAM files after ordering ?
2.6 years ago
Antonio R. Franco ♦ 4.0k
3
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5
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512
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Is it normal a substantial reduction of BAM files after ordering ?
BAM samtools
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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401
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Comment: C: Need some clarifications about the methylation mapper Bismark
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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401
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Comment: C: Need some clarifications about the methylation mapper Bismark
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
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3
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401
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Need some clarifications about the methylation mapper Bismark
Bismark methylation
2.6 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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1.4k
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Answer: A: Does STAR give the reads that were mapped at intergenic regions? How can I get t
2.7 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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651
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Answer: A: finding contigs present in one assembly but missing from another
2.7 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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14k
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Answer: A: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
2.8 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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446
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Answer: A: Structure of a enzyme
2.8 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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556
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Comment: C: gene expression and RNA-Seq
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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705
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Comment: C: Alignment of the partial genome sequencing
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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0
Replies
705
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Answer: A: Alignment of the partial genome sequencing
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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705
Views
Comment: C: Alignment of the partial genome sequencing
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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705
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Comment: A: Alignment of the partial genome sequencing
2.9 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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705
Views
Answer: A: Alignment of the partial genome sequencing
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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705
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Comment: A: Alignment of the partial genome sequencing
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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444
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Comment: A: Obtain fragments from RNA-Seq reads?
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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2.8k
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Comment: A: Kallisto pseudobam to IGV
3.2 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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4.0k
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Comment: C: HISAT2 rna-strandness option
3.2 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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4.0k
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Answer: A: HISAT2 rna-strandness option
3.2 years ago
Antonio R. Franco ♦ 4.0k
5
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1
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4.0k
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Answer: A: HISAT2 rna-strandness option
3.2 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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2.5k
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Comment: C: Gene Ontology Tool Selection
3.2 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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957
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Comment: C: Using RPK counts as DESeq2 input
3.4 years ago
Antonio R. Franco ♦ 4.0k
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