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Antonio R. Franco ♦ 4.0k
Status: New
Handle: @Antonio R. Franco13770
Reputation: 4040
Email: a******@uco.es
Joined: 11 months ago
Last seen: 12 months ago
Location: Spain. Universidad de Córdoba

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1
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0
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189
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A: How can I compare two reference genome
12 months ago
Antonio R. Franco ♦ 4.0k
2
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1
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6.8k
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A: R - removing column names from matrix
4.4 years ago
Antonio R. Franco ♦ 4.0k • updated 13 months ago
RamRS 21k
2
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1
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6.8k
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C: R - removing column names from matrix
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 13 months ago
RamRS 21k
2
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1
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6.8k
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C: R - removing column names from matrix
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 13 months ago
RamRS 21k
1
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0
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879
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A: Integrating DMR data
14 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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4.4k
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A: Any Free Software Similar To Sequencher?
14 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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221
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A: How to remove the contaminant reads from metagenome sequencing
14 months ago
Antonio R. Franco ♦ 4.0k
1
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0
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169
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A: How to join DESeq2 object "res" to the gene annotation with dplyr?
14 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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227
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C: How to remove bam files that don't contain matching reads
15 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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293
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C: Difficulty in Host removal by Bowtie2,samtools and bedtools
15 months ago
Antonio R. Franco ♦ 4.0k
1
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0
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293
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A: Difficulty in Host removal by Bowtie2,samtools and bedtools
15 months ago
Antonio R. Franco ♦ 4.0k
1
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0
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104k
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C: How To Update R In Ubuntu ?
4.0 years ago
Antonio R. Franco ♦ 4.0k • updated 15 months ago
RamRS 21k
0
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1
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3.9k
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C: normalization with DEseq2
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 16 months ago
RamRS 21k
0
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1
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3.9k
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C: normalization with DEseq2
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 16 months ago
RamRS 21k
1
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1
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3.9k
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C: normalization with DEseq2
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 16 months ago
RamRS 21k
1
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1
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3.9k
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C: normalization with DEseq2
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 16 months ago
RamRS 21k
1
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1
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3.9k
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C: normalization with DEseq2
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 16 months ago
RamRS 21k
2
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1
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3.9k
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A: normalization with DEseq2
4.6 years ago
Antonio R. Franco ♦ 4.0k • updated 16 months ago
RamRS 21k
2
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0
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260
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A: FastQ ColorSpace to BaseSpace format in 2018
18 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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210
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A: weird number in log2FC
18 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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746
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C: Orientation of PE reads a review of --fr --ff and --rf meanings
19 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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456
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C: Installing samtools from sourceforge
19 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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456
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A: Installing samtools from sourceforge
19 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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322
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A: Per base GC content with a shoulder after adapter removal and trimming
20 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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297
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C: CpG Methylation data from PacBio sequencing
20 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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297
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A: CpG Methylation data from PacBio sequencing
20 months ago
Antonio R. Franco ♦ 4.0k
2
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0
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525
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A: design matrix for time point comparision [1 treatment] in time course RNA Seq -
20 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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309
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A: How to use simultaneously long and short reads to assemble de novo a transcript
20 months ago
Antonio R. Franco ♦ 4.0k
3
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0
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417
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A: Organizing tools/ software
20 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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1.5k
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C: SE reads in fr-firststrand, fr-secondstrand
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
1
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1
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1.5k
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A: SE reads in fr-firststrand, fr-secondstrand
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
1
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0
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300
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A: sequence alignment of protein sequence
20 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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4.5k
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C: Problem In running read.Table function in R
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
0
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1
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4.5k
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C: Problem In running read.Table function in R
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
2
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1
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4.5k
Views
A: Problem In running read.Table function in R
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
0
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0
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1.4k
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A: blast running for several splitted query
5.1 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
1
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1
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571
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C: BLAST multiple database against each other
20 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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5.3k
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A: Best trimming tool
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
0
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0
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11k
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C: Heatmap.2 R for differentially expressed genes DeSEQ2
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
0
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0
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1.3k
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A: Find patterns in DNA sequence
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
1
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1
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607
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A: returning the gene name back to my matrix
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
1
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1
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607
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A: returning the gene name back to my matrix
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
2
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1
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607
Views
A: returning the gene name back to my matrix
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
0
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0
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30k
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C: Extracting Sequence From A 3Gb Fasta File
4.3 years ago
Antonio R. Franco ♦ 4.0k • updated 20 months ago
RamRS 21k
0
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3
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865
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How to order a gff3 file by coordinates
gff3 ordering
2.3 years ago
Antonio R. Franco ♦ 4.0k • updated 22 months ago
EagleEye 6.4k
0
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2
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407
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C: micro-array analysis without FoldChange
22 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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565
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A: Conversion of Fasta file
22 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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406
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A: Exonic SNPs extraction
22 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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1.1k
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A: rRNA remove from RNAseq data
22 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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1.2k
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A: De novo plant genome assembly
23 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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405
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A: how can we create heat map for only upregulated gene list
23 months ago
Antonio R. Franco ♦ 4.0k
5
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3
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302
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Asking about programs and methods to get gene methylation profiles
methylation profiles
23 months ago
Antonio R. Franco ♦ 4.0k • updated 23 months ago
igor 7.7k
1
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0
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584
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A: Salmon choosing library type
23 months ago
Antonio R. Franco ♦ 4.0k
3
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1
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1.2k
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A: What are the best tools for visualizing DNA methylation result?
23 months ago
Antonio R. Franco ♦ 4.0k
0
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0
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4.3k
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A: Gallery: Computational tools for DNA methylation
23 months ago
Antonio R. Franco ♦ 4.0k
1
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0
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1.8k
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A: RPKM to TPM conversion?
23 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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711
Views
A: Extract uniquely mapped reads from one species
23 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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853
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A: Could somebody suggest free pathway visualization tool for omics data from plant
23 months ago
Antonio R. Franco ♦ 4.0k
2
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0
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886
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A: The best way to produce gene body coverage
23 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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604
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C: get identical number of read1 and read2 aligned
23 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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604
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C: get identical number of read1 and read2 aligned
23 months ago
Antonio R. Franco ♦ 4.0k
1
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1
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604
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A: how can I get identical read1 and read2?
23 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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398
Views
A: What is the exact number of gene that we can detect from differentially expresse
24 months ago
Antonio R. Franco ♦ 4.0k
0
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1
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600
Views
Need help with methylation bias
bismark bwameth methylation epigenesis
2.1 years ago
Antonio R. Franco ♦ 4.0k • updated 2.0 years ago
Devon Ryan 90k
0
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1
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2.4k
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C: Interpreting distance from clustal omega
2.1 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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2.4k
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A: Interpreting distance from clustal omega
2.1 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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2.4k
Views
C: Interpreting distance from clustal omega
2.1 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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2.4k
Views
A: Interpreting distance from clustal omega
2.1 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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2.4k
Views
C: Interpreting distance from clustal omega
2.1 years ago
Antonio R. Franco ♦ 4.0k
1
Vote
1
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700
Views
Clustal Omega and bootstrapping
clustal iq-tree bootstrap alignment
2.1 years ago
Antonio R. Franco ♦ 4.0k
1
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0
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887
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A: short RNA reads alignment
2.1 years ago
Antonio R. Franco ♦ 4.0k
2
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0
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889
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C: Remove singletons from bam
2.1 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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889
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A: Remove singletons from bam
2.1 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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276
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A: Preparing primary assembly in RNAseq
2.1 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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317
Views
Can you get information about variance of microarrays experiments from a MA plot ?
MA plot microarray
2.1 years ago
Antonio R. Franco ♦ 4.0k • updated 2.1 years ago
Devon Ryan 90k
0
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0
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2.2k
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C: Big news from Microsoft. BASH on windows.
2.2 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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508
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C: Is it normal a substantial reduction of BAM files after ordering ?
2.2 years ago
Antonio R. Franco ♦ 4.0k
3
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5
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508
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Is it normal a substantial reduction of BAM files after ordering ?
BAM samtools
2.2 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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508
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A: Is it normal a substantial reduction of BAM files after ordering ?
2.2 years ago
Antonio R. Franco ♦ 4.0k
0
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0
Replies
393
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C: Need some clarifications about the methylation mapper Bismark
2.2 years ago
Antonio R. Franco ♦ 4.0k
0
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1
Reply
393
Views
C: Need some clarifications about the methylation mapper Bismark
2.2 years ago
Antonio R. Franco ♦ 4.0k
0
Votes
3
Replies
393
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Need some clarifications about the methylation mapper Bismark
Bismark methylation
2.2 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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1.4k
Views
A: Does STAR give the reads that were mapped at intergenic regions? How can I get t
2.4 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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639
Views
A: finding contigs present in one assembly but missing from another
2.4 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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14k
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A: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
2.4 years ago
Antonio R. Franco ♦ 4.0k
0
Votes
1
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441
Views
A: Structure of a enzyme
2.5 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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552
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C: gene expression and RNA-Seq
2.5 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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696
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C: Alignment of the partial genome sequencing
2.5 years ago
Antonio R. Franco ♦ 4.0k
0
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0
Replies
696
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A: Alignment of the partial genome sequencing
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
Votes
1
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696
Views
C: Alignment of the partial genome sequencing
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
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0
Replies
696
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A: Alignment of the partial genome sequencing
2.6 years ago
Antonio R. Franco ♦ 4.0k
1
Vote
1
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696
Views
A: Alignment of the partial genome sequencing
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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696
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A: Alignment of the partial genome sequencing
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
Votes
1
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439
Views
A: Obtain fragments from RNA-Seq reads?
2.6 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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2.8k
Views
A: Kallisto pseudobam to IGV
2.8 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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4.0k
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C: HISAT2 rna-strandness option
2.9 years ago
Antonio R. Franco ♦ 4.0k
1
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1
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4.0k
Views
A: HISAT2 rna-strandness option
2.9 years ago
Antonio R. Franco ♦ 4.0k
5
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1
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4.0k
Views
A: HISAT2 rna-strandness option
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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0
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2.5k
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C: Gene Ontology Tool Selection
2.9 years ago
Antonio R. Franco ♦ 4.0k
0
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1
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950
Views
C: Using RPK counts as DESeq2 input
3.0 years ago
Antonio R. Franco ♦ 4.0k
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