Biostars beta testing.
James Ashmore ♦ 2.6k
Status: New
Handle: @James Ashmore13632
Reputation: 2600
Email: j**********@icloud.com
Joined: 8 months ago
Twitter: jma1991
Last seen: 8 months ago
Location: UK/Edinburgh/MRC Centre for Regenerative Medicine

I am a PhD student in Simon Tomlinson's research group at the MRC Centre for Regenerative Medicine. My interests lie in the biology of reprogramming, and developing methods to analyse the reprogramming process.

Comment: C: Software to extract run information from FASTQ headers?
0 Votes | 0 Replies
12 months ago
James Ashmore
♦ 2.6k
Comment: C: Software to extract run information from FASTQ headers?
1 Vote | 0 Replies
12 months ago
James Ashmore
♦ 2.6k
Software to extract run information from FASTQ headers?
4 Votes | 8 Replies
12 months ago
James Ashmore
♦ 2.6k
• updated 12 months ago
Pierre Lindenbaum
120k
Comment: C: Software to extract run information from FASTQ headers?
0 Votes | 0 Replies
12 months ago
James Ashmore
♦ 2.6k
Answer: A: mitochondrial blacklists ATAC-Seq
1 Vote | 0 Replies
4.0 years ago
James Ashmore
♦ 2.6k
• updated 17 months ago
RamRS
21k
Comment: C: using bash variable in picard MarkDuplicates command
2 Votes | 1 Reply
19 months ago
James Ashmore
♦ 2.6k
Comment: C: Analysis of gene expression data
1 Vote | 0 Replies
20 months ago
James Ashmore
♦ 2.6k
Answer: A: Processing ATAC-seq data after peak calling
2 Votes | 0 Replies
20 months ago
James Ashmore
♦ 2.6k
Comment: C: A question about Homer ChIP-seq analysis
0 Votes | 1 Reply
20 months ago
James Ashmore
♦ 2.6k
Comment: C: A question about Homer ChIP-seq analysis
0 Votes | 1 Reply
20 months ago
James Ashmore
♦ 2.6k
Comment: C: ATAC-seq DE analysis
1 Vote | 1 Reply
20 months ago
James Ashmore
♦ 2.6k
Comment: C: Creating pseudo-replicates from a paired-end BAM file
0 Votes | 1 Reply
20 months ago
James Ashmore
♦ 2.6k
Comment: C: Creating pseudo-replicates from a paired-end BAM file
0 Votes | 1 Reply
20 months ago
James Ashmore
♦ 2.6k
Answer: A: output TMM normalized counts with edgeR
3 Votes | 1 Reply
20 months ago
James Ashmore
♦ 2.6k
Comment: C: output TMM normalized counts with edgeR
0 Votes | 1 Reply
20 months ago
James Ashmore
♦ 2.6k
Comment: C: Problem with getGEO
1 Vote | 1 Reply
21 months ago
James Ashmore
♦ 2.6k
Comment: C: Diffbind - Very high proportion of significant peaks
1 Vote | 1 Reply
22 months ago
James Ashmore
♦ 2.6k
Answer: A: Error in BioMartVersion
0 Votes | 0 Replies
2.1 years ago
James Ashmore
♦ 2.6k
Comment: C: Normalizing transcriptome data by tissue type
1 Vote | 0 Replies
2.1 years ago
James Ashmore
♦ 2.6k
Answer: A: Parse FASTQC data
1 Vote | 1 Reply
2.1 years ago
James Ashmore
♦ 2.6k
Comment: C: Is possible to convert BSgenome object to GRange?
3 Votes | 1 Reply
2.1 years ago
James Ashmore
♦ 2.6k
Comment: C: Changes log2FC values of DESeq2
2 Votes | 1 Reply
2.2 years ago
James Ashmore
♦ 2.6k
Comment: C: High Speed Downloading of SRA, SAM and Fastq Files
1 Vote | 1 Reply
2.2 years ago
James Ashmore
♦ 2.6k
Comment: C: Generate artificial reads
0 Votes | 1 Reply
2.2 years ago
James Ashmore
♦ 2.6k
Answer: A: Generate artificial reads
2 Votes | 1 Reply
2.2 years ago
James Ashmore
♦ 2.6k
Comment: C: edgeR Pvalue/FDR results
0 Votes | 1 Reply
2.2 years ago
James Ashmore
♦ 2.6k
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