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Comment: Comment: permutation test in edgeR
3 days ago by Gordon Smyth ★ 7.0k
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410
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Comment: Comment: Difference when using difference number of pathways score to compare between 3 g
4 days ago by Gordon Smyth ★ 7.0k
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Answer: Answer: Removing Illumina microarray probes with no expression HumanHT-12v4
4 days ago by Gordon Smyth ★ 7.0k
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371
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Answer: Answer: differential gene expression analysis when not all samples have an untreated cou
7 days ago by Gordon Smyth ★ 7.0k
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401
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Comment: Comment: Limma compare between 3 conditions vs 2 conditions
8 days ago by Gordon Smyth ★ 7.0k
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241
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Answer: Answer: Choosing an FC Threshold
28 days ago by Gordon Smyth ★ 7.0k
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1.0k
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Comment: Comment: Shrink logFC values after edgeR
4 weeks ago by Gordon Smyth ★ 7.0k
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455
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Comment: Comment: 'Invalid parameter' error to generate a count matrix using featurecounts
5 weeks ago by Gordon Smyth ★ 7.0k
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1
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455
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Answer: Answer: 'Invalid parameter' error to generate a count matrix using featurecounts
5 weeks ago by Gordon Smyth ★ 7.0k
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428
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Comment: Comment: Differential express genes in imbalance groups
5 weeks ago by Gordon Smyth ★ 7.0k
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3
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428
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Answer: Answer: Differential express genes in imbalance groups
5 weeks ago by Gordon Smyth ★ 7.0k
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205
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Comment: Comment: Computing mid parent value for DE analysis
6 weeks ago by Gordon Smyth ★ 7.0k
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631
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Answer: Answer: RNA-seq - Creating SAF from NCBI gff for Subread featureCounts - keep 'gene' or
7 weeks ago by Gordon Smyth ★ 7.0k
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1.2k
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Answer: Answer: MA graphs for EdgeR and Voom vary
7 weeks ago by Gordon Smyth ★ 7.0k
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1.0k
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Comment: Comment: Shrink logFC values after edgeR
7 weeks ago by Gordon Smyth ★ 7.0k
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710
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Answer: Answer: Seeking Beginner-Friendly Resources for Deepening Understanding of Bioinformatic
7 weeks ago by Gordon Smyth ★ 7.0k
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440
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Comment: Comment: Does the order of the batch variable matter in Limma design matrix?
7 weeks ago by Gordon Smyth ★ 7.0k
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3.8k
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Comment: Comment: Can one plot % of variance using the plotMDS function?
7 weeks ago by Gordon Smyth ★ 7.0k
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440
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Answer: Answer: Does the order of the batch variable matter in Limma design matrix?
5 weeks ago by Gordon Smyth ★ 7.0k
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1
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467
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Answer: Answer: Bayesian Differential Expression
9 weeks ago by Gordon Smyth ★ 7.0k
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442
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Comment: Comment: filtering lowly expressed reads
11 weeks ago by Gordon Smyth ★ 7.0k
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227
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Comment: Comment: Design matrix after RUVg correction
10 weeks ago by Gordon Smyth ★ 7.0k
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2.8k
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Comment: Comment: Converting LogCPM to raw counts for DESEQ2
11 weeks ago by Gordon Smyth ★ 7.0k
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910
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Answer: Answer: EdgeR: upregulated with respect to what group?
11 weeks ago by Gordon Smyth ★ 7.0k
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1.3k
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Answer: Answer: Is there a program to average read counts from technical replicates?
11 weeks ago by Gordon Smyth ★ 7.0k
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0
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898
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Comment: Comment: How do I work out which condition the genes are down-regulated in?
11 weeks ago by Gordon Smyth ★ 7.0k
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898
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Answer: Answer: How do I work out which condition the genes are down-regulated in?
11 weeks ago by Gordon Smyth ★ 7.0k
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0
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1.6k
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Answer: Answer: positive and negative Fold Change glmLRT test
11 weeks ago by Gordon Smyth ★ 7.0k
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0
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732
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Answer: Answer: logFoldChange computed by EdgeR different from naive log2FCcomputed based on rea
11 weeks ago by Gordon Smyth ★ 7.0k
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1
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1.0k
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Answer: Answer: Shrink logFC values after edgeR
11 weeks ago by Gordon Smyth ★ 7.0k
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470
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Comment: Comment: Differing p-value cutoffs of limma derived DEGs in volcanoplots
12 weeks ago by Gordon Smyth ★ 7.0k
3
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1
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470
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Answer: Answer: Differing p-value cutoffs of limma derived DEGs in volcanoplots
12 weeks ago by Gordon Smyth ★ 7.0k
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296
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago by Gordon Smyth ★ 7.0k
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269
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Comment: Comment: Gene expression of microarray data
3 months ago by Gordon Smyth ★ 7.0k
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1
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568
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Comment: Comment: Differential RNA editing using edgeR
3 months ago by Gordon Smyth ★ 7.0k
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1
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568
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Answer: Answer: Differential RNA editing using edgeR
3 months ago by Gordon Smyth ★ 7.0k
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1
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494
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Comment: Comment: how to start DEG analysis after featurecounts
3 months ago by Gordon Smyth ★ 7.0k
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0
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
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1
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
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0
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
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1
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
1
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0
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
1
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1
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1.6k
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Comment: Comment: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
1
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2
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1.6k
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Answer: Answer: how to test for differential expression in samples where a global increase in ge
4 months ago by Gordon Smyth ★ 7.0k
2
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0
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1.6k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
4 months ago by Gordon Smyth ★ 7.0k
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0
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512
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Comment: Comment: featureCounts error???
5 months ago by Gordon Smyth ★ 7.0k
3
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1
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668
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Answer: Answer: Microarray data analysis with and without contrast
5 months ago by Gordon Smyth ★ 7.0k
2
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0
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6.6k
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Comment: Comment: Illumina HumanHT-12 V4.0 expression beadchip
5 months ago by Gordon Smyth ★ 7.0k
1
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1
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6.6k
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Answer: Answer: Illumina HumanHT-12 V4.0 expression beadchip
5 months ago by Gordon Smyth ★ 7.0k
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1
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1.5k
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Job: Laboratory Head Artificial Intelligence and Machine Learning (WEHI, Australia)
Australia machine-learning
5 months ago by Gordon Smyth ★ 7.0k
498 results • Page 1 of 10
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