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EagleEye ♦ 6.4k
Role: Moderator
Status: New
Handle: @EagleEye12958
Reputation: 6360
Email: s*********@gmail.com
Joined: 9 months ago
Twitter: gridhrahakshi
Google Scholar: 2VNo654AAAAJ
Last seen: 10 months ago
Location: Sweden

Investigating field of biology by applying logics of computer science, statistics and mathematics.

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216
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C: Where can I download GO terms and their associated E. coli genes?
0 Votes | 0 Replies
10 months ago
EagleEye 6.4k
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216
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C: Where can I download GO terms and their associated E. coli genes?
1 Vote | 1 Reply
10 months ago
EagleEye 6.4k
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1
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216
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C: Where can I download GO terms and their associated E. coli genes?
0 Votes | 1 Reply
10 months ago
EagleEye 6.4k
1
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216
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A: Where can I download GO terms and their associated E. coli genes?
1 Vote | 1 Reply
10 months ago
EagleEye 6.4k
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6.8k
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A: How To Get Gene List From Each Gene Ontology Term?
1 Vote | 0 Replies
10 months ago
EagleEye 6.4k
4
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1.9k
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GeneSCF (Gene Enrichment Tool): Advice to users
4 Votes | 2 Replies
genescf kegg GO annotation GeneSCF News
10 months ago
EagleEye 6.4k
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146
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A: Tool to perform GSEA on mapped genes
1 Vote | 0 Replies
10 months ago
EagleEye 6.4k
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1
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17k
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C: Retrieve All Genes Associated With A Go Term
0 Votes | 1 Reply
11 months ago
EagleEye 6.4k
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164
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C: Publicly available brain tissue (any part) Histone (H3K27me3 and H3K4me3) ChIP-s
0 Votes | 0 Replies
11 months ago
EagleEye 6.4k
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1
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164
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C: Publicly available brain tissue (any part) Histone (H3K27me3 and H3K4me3) ChIP-s
0 Votes | 1 Reply
11 months ago
EagleEye 6.4k
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164
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C: Publicly available brain tissue (any part) Histone (H3K27me3 and H3K4me3) ChIP-s
0 Votes | 0 Replies
11 months ago
EagleEye 6.4k
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6
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164
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Publicly available brain tissue (any part) Histone (H3K27me3 and H3K4me3) ChIP-seq samples
3 Votes | 6 Replies
ChIP-Seq sequencing next-gen
11 months ago
EagleEye 6.4k
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651
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C: How can i extract FPKM from my GTF file which is created by stringtie?
0 Votes | 0 Replies
11 months ago
EagleEye 6.4k
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282
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A: What to do after differential expression
0 Votes | 0 Replies
11 months ago
EagleEye 6.4k
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25k
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C: Gene Set Clustering based on Functional annotation (GeneSCF)
0 Votes | 0 Replies
12 months ago
EagleEye 6.4k
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1
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25k
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C: Gene Set Clustering based on Functional annotation (GeneSCF)
0 Votes | 1 Reply
12 months ago
EagleEye 6.4k
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180
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A: GO terms from keywords in R
0 Votes | 0 Replies
13 months ago
EagleEye 6.4k
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453
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C: can lnc-RNA target coding RNA?
2 Votes | 0 Replies
13 months ago
EagleEye 6.4k
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1
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453
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C: can lnc-RNA target coding RNA?
0 Votes | 1 Reply
13 months ago
EagleEye 6.4k
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215
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A: DE and enrichment analysis pipeline
0 Votes | 0 Replies
14 months ago
EagleEye 6.4k
2
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1
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305
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C: How to separate lncRNA and mRNA from RNA-Seq data for differential expression?
2 Votes | 1 Reply
14 months ago
EagleEye 6.4k
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3
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453
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C: can lnc-RNA target coding RNA?
1 Vote | 3 Replies
14 months ago
EagleEye 6.4k
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1
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373
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C: how to install Juicer hi-c
1 Vote | 1 Reply
14 months ago
EagleEye 6.4k
2
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1
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373
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A: how to install Juicer hi-c
2 Votes | 1 Reply
14 months ago
EagleEye 6.4k
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270
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C: gene ontology analysis based on transcript biotype
0 Votes | 0 Replies
14 months ago
EagleEye 6.4k
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1
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270
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A: gene ontology analysis based on transcript biotype
1 Vote | 1 Reply
14 months ago
EagleEye 6.4k
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25k
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C: Gene Set Clustering based on Functional annotation (GeneSCF)
0 Votes | 0 Replies
14 months ago
EagleEye 6.4k
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1
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25k
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C: Gene Set Clustering based on Functional annotation (GeneSCF)
0 Votes | 1 Reply
14 months ago
EagleEye 6.4k
1
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441
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A: What's your preferred pathway enrichment analysis tool after DEG analysis and wh
1 Vote | 0 Replies
14 months ago
EagleEye 6.4k
1
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235
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A: some questions to do GO enrichment analysis
1 Vote | 0 Replies
14 months ago
EagleEye 6.4k
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240
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A: Do the gene sets of parent terms contains the gene sets of child terms in go ont
0 Votes | 0 Replies
15 months ago
EagleEye 6.4k
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1
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365
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A: bash & quickGO to download gene symbols of a GO term
1 Vote | 1 Reply
15 months ago
EagleEye 6.4k
2
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462
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C: Pathway analysis and Gene enrichment Analysis Queries
2 Votes | 0 Replies
16 months ago
EagleEye 6.4k
2
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428
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A: HUGO and Ensembl ids
2 Votes | 0 Replies
16 months ago
EagleEye 6.4k
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225
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A: Chip-seq data of bivalent regions in hESC
0 Votes | 0 Replies
16 months ago
EagleEye 6.4k
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476
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A: How can implement ensembl gene annotation pipeline for my data?
0 Votes | 0 Replies
16 months ago
EagleEye 6.4k
1
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1
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10k
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A: extract only geneID and gene symbol from GTF file
1 Vote | 1 Reply
16 months ago
EagleEye 6.4k
1
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0
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545
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A: limitations of Edge R or DEseq
1 Vote | 0 Replies
16 months ago
EagleEye 6.4k
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1
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651
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C: How can i extract FPKM from my GTF file which is created by stringtie?
0 Votes | 1 Reply
17 months ago
EagleEye 6.4k
2
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1
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651
Views
A: How can i extract FPKM from my GTF file which is created by stringtie?
2 Votes | 1 Reply
17 months ago
EagleEye 6.4k
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1
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741
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C: hisat2 and RSEM pipeline
0 Votes | 1 Reply
17 months ago
EagleEye 6.4k
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1
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741
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A: hisat2 and RSEM pipeline
0 Votes | 1 Reply
17 months ago
EagleEye 6.4k
1
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1
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549
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C: eQTL analysis considering P-values
1 Vote | 1 Reply
17 months ago
EagleEye 6.4k
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2
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549
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A: eQTL analysis considering P-values
1 Vote | 2 Replies
17 months ago
EagleEye 6.4k
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257
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A: No replicates in 1 group, which idea is the best to apply?
1 Vote | 0 Replies
17 months ago
EagleEye 6.4k
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441
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A: For multiple testing correction in GO analysis, is it ok to remove GO terms with
0 Votes | 0 Replies
17 months ago
EagleEye 6.4k
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428
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C: HUGO and Ensembl ids
0 Votes | 0 Replies
17 months ago
EagleEye 6.4k
2
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0
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500
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C: Problem with extracting read counts from RNA seq file
2 Votes | 0 Replies
17 months ago
EagleEye 6.4k
1
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1
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500
Views
C: Problem with extracting read counts from RNA seq file
1 Vote | 1 Reply
17 months ago
EagleEye 6.4k
1
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1
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500
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C: Problem with extracting read counts from RNA seq file
1 Vote | 1 Reply
17 months ago
EagleEye 6.4k
1
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1.9k
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C: Gene ontology and KEGG pathway analysis of rice RNA-seq data
1 Vote | 1 Reply
17 months ago
EagleEye 6.4k
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1
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551
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A: Plot to show expression of a gene between two groups
0 Votes | 1 Reply
18 months ago
EagleEye 6.4k
2
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371
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A: Sorting RNA-seq data
2 Votes | 0 Replies
18 months ago
EagleEye 6.4k • updated 18 months ago
zx8754 7.5k
3
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0
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435
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C: what is the easiest/fastest way to convert from BAM to GTF
3 Votes | 0 Replies
18 months ago
EagleEye 6.4k
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554
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A: Run a GO analysis for an non-model organism with annotation file
1 Vote | 0 Replies
18 months ago
EagleEye 6.4k
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496
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A: Extract a chromosome from a WIG file
0 Votes | 0 Replies
18 months ago
EagleEye 6.4k
1
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262
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A: how to find out which cellular pathways a gene belongs to?
1 Vote | 0 Replies
18 months ago
EagleEye 6.4k
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9.2k
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C: GO analysis: DAVID vs GREAT vs GOrilla
0 Votes | 0 Replies
3.2 years ago
EagleEye 6.4k • updated 18 months ago
RamRS 21k
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A: MuTect2 VCF file
1 Vote | 0 Replies
4.1 years ago
EagleEye 6.4k • updated 18 months ago
RamRS 21k
2
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1
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732
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A: Is it possible to analyze differentially expressed genes without sample replicat
2 Votes | 1 Reply
18 months ago
EagleEye 6.4k
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224
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A: Is there any way to create graphics of the Go enrichment, if I already have my G
0 Votes | 0 Replies
19 months ago
EagleEye 6.4k
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400
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A: Gene ontology analysis
0 Votes | 0 Replies
19 months ago
EagleEye 6.4k
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507
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C: How do you convert featureCounts output into composition of mapped reads by RNA
0 Votes | 0 Replies
19 months ago
EagleEye 6.4k
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342
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C: Mapsplice 2 error
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
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375
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C: GSEA analysis and pathway mapping
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
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1
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507
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C: How do you convert featureCounts output into composition of mapped reads by RNA
0 Votes | 1 Reply
20 months ago
EagleEye 6.4k
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507
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A: How do you convert featureCounts output into composition of mapped reads by RNA
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
1
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282
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A: Regarding cancer data analysis
1 Vote | 0 Replies
20 months ago
EagleEye 6.4k
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1
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342
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A: Mapsplice 2 error
0 Votes | 1 Reply
20 months ago
EagleEye 6.4k
1
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1
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343
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A: Human and animal (mouse) expression datasets for the same tissues
1 Vote | 1 Reply
20 months ago
EagleEye 6.4k
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1
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688
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A: How to integrate GTEx data for variant annotation to understand the tissue speci
0 Votes | 1 Reply
20 months ago
EagleEye 6.4k
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745
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C: circRNA database of TCGA
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
1
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944
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A: how can i get normalized gene expression matrix in TCGA?
1 Vote | 0 Replies
20 months ago
EagleEye 6.4k
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1
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745
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A: circRNA database of TCGA
0 Votes | 1 Reply
20 months ago
EagleEye 6.4k
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0
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404
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C: Sperm gene expression
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
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238
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A: Hi-C programs recommandations
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
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304
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A: can pathway analysis from mRNA from RNA seq be done on small set of selected gen
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
1
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0
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340
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A: How to approach QTL for transcriptomic data?
1 Vote | 0 Replies
20 months ago
EagleEye 6.4k
2
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2
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453
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A: can lnc-RNA target coding RNA?
2 Votes | 2 Replies
20 months ago
EagleEye 6.4k
1
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1
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1.5k
Views
A: how to produce Dot plots in R
1 Vote | 1 Reply
20 months ago
EagleEye 6.4k
1
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1
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674
Views
C: How to make a clear box plot or whatever beautiful for showing the ratio of two
1 Vote | 1 Reply
20 months ago
EagleEye 6.4k
1
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1
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674
Views
C: How to make a clear box plot or whatever beautiful for showing the ratio of two
1 Vote | 1 Reply
20 months ago
EagleEye 6.4k
0
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0
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479
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A: GO Analysis Clarification using GOstats using hyperGTest()
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
0
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1
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479
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A: GO Analysis Clarification using GOstats using hyperGTest()
0 Votes | 1 Reply
20 months ago
EagleEye 6.4k
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0
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479
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C: GO Analysis Clarification using GOstats using hyperGTest()
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
3
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0
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910
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A: RNASeq DGE : Kallisto-sleuth Vs Ballgown
3 Votes | 0 Replies
20 months ago
EagleEye 6.4k
2
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0
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1.0k
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A: P-value calculation for Gene Ontology Terms
2 Votes | 0 Replies
20 months ago
EagleEye 6.4k
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0
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381
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A: total reads for ChIP-seq and RNA-seq
0 Votes | 0 Replies
20 months ago
EagleEye 6.4k
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378
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A: visualization of chromatin interaction networks
0 Votes | 0 Replies
21 months ago
EagleEye 6.4k
1
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3.0k
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A: How to interpret the result of GO analysis using Ontologizer ?
1 Vote | 1 Reply
21 months ago
EagleEye 6.4k
3
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2
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674
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A: How to make a clear box plot or whatever beautiful
3 Votes | 2 Replies
21 months ago
EagleEye 6.4k
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1
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1.6k
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C: STAR alignment error- Segmentation fault (core dumped)
0 Votes | 1 Reply
21 months ago
EagleEye 6.4k
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3
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1.6k
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C: STAR alignment error- Segmentation fault (core dumped)
0 Votes | 3 Replies
21 months ago
EagleEye 6.4k
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1
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1.6k
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C: STAR alignment error- Segmentation fault (core dumped)
0 Votes | 1 Reply
21 months ago
EagleEye 6.4k
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1.6k
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C: STAR alignment error- Segmentation fault (core dumped)
0 Votes | 0 Replies
21 months ago
EagleEye 6.4k
3
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12
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1.6k
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STAR alignment error- Segmentation fault (core dumped)
3 Votes | 12 Replies
alignment software error RNA-Seq STAR
21 months ago
EagleEye 6.4k
3
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0
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487
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A: Venue to publish a bioinformatics tool
3 Votes | 0 Replies
21 months ago
EagleEye 6.4k
5
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553
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A: awk specific line from another file
5 Votes | 0 Replies
21 months ago
EagleEye 6.4k
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338
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A: Metabolic Pathways From KEGG.
0 Votes | 0 Replies
21 months ago
EagleEye 6.4k
0
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0
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553
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C: awk specific line from another file
0 Votes | 0 Replies
21 months ago
EagleEye 6.4k
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