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Keith Callenberg • 890
Status: New
Handle: @Keith Callenberg1165
Reputation: 890
Joined: 20 months ago
Twitter: keithcallenberg
Google Scholar: zkloJroAAAAJ
Last seen: 24 months ago
Location: Pittsburgh, PA

Lead Machine Learning Engineer, UPMC Enterprises

PhD, Computational Biology, Carnegie Mellon University-University of Pittsburgh

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9
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2.7k
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Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
protein modeling structure protein
9.8 years ago
Keith Callenberg • 890 • updated 3.7 years ago
Biostar 20
0
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1
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1.3k
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Comment: C: Download error 1000g2015aug for annovar
4.0 years ago
Keith Callenberg • 890
2
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1.4k
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Answer: A: Bioinformatics in a clinical diagnostic setting versus research (academia)
4.1 years ago
Keith Callenberg • 890
3
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2
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1.1k
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Comment: C: How to analyze NGS data: An overview of nine different IT solutions
4.3 years ago
Keith Callenberg • 890
4
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1
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14k
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Comment: C: Trimming adapter sequences - is it necessary?
4.4 years ago
Keith Callenberg • 890
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Answer: A: Variant calling for sanger reads
4.5 years ago
Keith Callenberg • 890
1
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Comment: C: 23andme files uses GRCh37 or GRCh38 ?
4.7 years ago
Keith Callenberg • 890
1
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1
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1.0k
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Comment: C: Number of SNPs by target sequencing
4.7 years ago
Keith Callenberg • 890
10
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1.2k
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Forum: How can I illustrate the importance of open source software in bioinformatics for people outside the field?
genome Forum
4.7 years ago
Keith Callenberg • 890 • updated 4.7 years ago
LLTommy ♦ 1.2k
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Comment: C: How can I illustrate the importance of open source software in bioinformatics fo
4.7 years ago
Keith Callenberg • 890
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Answer: A: Is there a way to translate amino acid sequences into atomic sequences?
4.8 years ago
Keith Callenberg • 890
1
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Answer: A: List Of Cloud Genomics Companies
4.8 years ago
Keith Callenberg • 890
4
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1
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1.9k
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Answer: A: Ion Torrent sample data
5.0 years ago
Keith Callenberg • 890
0
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1.1k
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Comment: C: LIMS software for clinical NGS
5.1 years ago
Keith Callenberg • 890
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Comment: C: Tophat: # reads mapping to CDS, rRNA, intergenic?
5.4 years ago
Keith Callenberg • 890
1
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Comment: C: Tophat: # reads mapping to CDS, rRNA, intergenic?
5.4 years ago
Keith Callenberg • 890
1
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7.5k
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Answer: A: Which program, tool, or strategy do you use to visualize genomic rearrangements?
5.4 years ago
Keith Callenberg • 890
3
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2.3k
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Answer: A: combining multiple gz files in subfolders
5.5 years ago
Keith Callenberg • 890
0
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0
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2.3k
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Job: Bioinformatics Engineer at University of Pittsburgh Medical Center, Pittsburgh, PA, USA
clinical sequencing Python Linux Job
5.5 years ago
Keith Callenberg • 890
0
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0
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1.9k
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Comment: C: Rna-Seq : Check For Fusions With A Known Position
5.7 years ago
Keith Callenberg • 890
0
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8.8k
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Comment: C: Guessing The Quality Scale In Fastq Files
5.7 years ago
Keith Callenberg • 890
1
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19k
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Comment: C: Help a graduate student going into Bioinformatics looking for a new personal lap
5.8 years ago
Keith Callenberg • 890
1
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1
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19k
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Comment: C: Help a graduate student going into Bioinformatics looking for a new personal lap
5.8 years ago
Keith Callenberg • 890
0
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1
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1.0k
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Comment: C: Invitation Research Collaborations
5.9 years ago
Keith Callenberg • 890
9
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2
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1.9k
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What is the best way to transfer HiSeq data from the instrument to compute resources and/or storage?
next-gen sequencing HiSeq
6.0 years ago
Keith Callenberg • 890 • updated 5.9 years ago
zerbeb • 50
0
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0
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3.8k
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Comment: C: Running Tophat --Fusion-Search On A Filtered Bam That Was Generated By Tophat
6.0 years ago
Keith Callenberg • 890
6
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0
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22k
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Answer: A: How To Determine If Paired–End Illumina Rnaseq Reads Are Strand–Specific
6.0 years ago
Keith Callenberg • 890
0
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0
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2.1k
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Comment: C: Problem with Pymol's orient function in certain cases
6.0 years ago
Keith Callenberg • 890
0
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1
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982
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Comment: C: corresponding gene names for probeIDs
6.0 years ago
Keith Callenberg • 890
0
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1.8k
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Comment: C: Bulk water residues from pdb files
6.0 years ago
Keith Callenberg • 890
0
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1
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1.8k
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Comment: C: Bulk water residues from pdb files
6.0 years ago
Keith Callenberg • 890
1
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1.8k
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Answer: A: Bulk water residues from pdb files
6.0 years ago
Keith Callenberg • 890
0
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1.5k
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Comment: C: bcl2fasta writing file in read only directory
6.0 years ago
Keith Callenberg • 890
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2.4k
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Comment: C: Converting .Bcl To Fasta
6.0 years ago
Keith Callenberg • 890
3
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2
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8.1k
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Answer: A: Biostar 2.0 released
6.9 years ago
Keith Callenberg • 890
3
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3
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1.4k
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How Much Energy Is Required To Unfold One Turn Of An Alpha-Helix?
protein structure secondary
9.0 years ago
Keith Callenberg • 890 • updated 9.0 years ago
Priyabrata • 60
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1.4k
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Comment: C: How Much Energy Is Required To Unfold One Turn Of An Alpha-Helix?
9.0 years ago
Keith Callenberg • 890
1
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0
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2.4k
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Answer: A: The System Is Not Getting Well Minimized - Gromacs
9.0 years ago
Keith Callenberg • 890
1
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0
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3.4k
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Answer: A: Best Protein Structure Minimization Algorithm
9.0 years ago
Keith Callenberg • 890
0
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0
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3.1k
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Comment: C: Easy Retrieval Of Mutant Pdb Structures
9.1 years ago
Keith Callenberg • 890
2
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0
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2.1k
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Comment: C: Need: Bowtie Executable On Ia64
9.1 years ago
Keith Callenberg • 890
3
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0
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11k
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Answer: A: Software For Hydrogen Bond Detection In Pdb Data?
9.1 years ago
Keith Callenberg • 890
0
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0
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4.4k
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Comment: C: Extracting Coordinates From Pdb File & Extracting The Region Of Interest
9.1 years ago
Keith Callenberg • 890
0
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0
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4.4k
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Comment: C: Extracting Coordinates From Pdb File & Extracting The Region Of Interest
9.1 years ago
Keith Callenberg • 890
0
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0
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6.2k
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Comment: C: Pymol-Generate Pymol Movie To Mpeg
9.1 years ago
Keith Callenberg • 890
4
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6
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4.4k
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Answer: A: Extracting Coordinates From Pdb File & Extracting The Region Of Interest
9.1 years ago
Keith Callenberg • 890
2
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0
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1.3k
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Answer: A: Replace Image To Jmol Representation After Click
9.1 years ago
Keith Callenberg • 890
1
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0
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1.7k
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Answer: A: Library For Generating Protein Conformations
9.1 years ago
Keith Callenberg • 890
2
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0
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2.7k
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Answer: A: Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
9.1 years ago
Keith Callenberg • 890
0
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0
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2.0k
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Comment: C: Surface Amino-Acid From Sequence Only
9.1 years ago
Keith Callenberg • 890
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