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Keith Callenberg • 890
Status: New
Handle: @Keith Callenberg1165
Reputation: 890
Email: k*********@gmail.com
Joined: 15 months ago
Twitter: keithcallenberg
Google Scholar: zkloJroAAAAJ
Last seen: 19 months ago
Location: Pittsburgh, PA

Lead Machine Learning Engineer, UPMC Enterprises

PhD, Computational Biology, Carnegie Mellon University-University of Pittsburgh

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9
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Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
protein modeling structure protein
9.3 years ago
Keith Callenberg • 890 • updated 3.3 years ago
Biostar 20
0
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1
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1.3k
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Comment: C: Download error 1000g2015aug for annovar
3.6 years ago
Keith Callenberg • 890
2
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1.4k
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Answer: A: Bioinformatics in a clinical diagnostic setting versus research (academia)
3.7 years ago
Keith Callenberg • 890
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Comment: C: How to analyze NGS data: An overview of nine different IT solutions
3.9 years ago
Keith Callenberg • 890
4
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1
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14k
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Comment: C: Trimming adapter sequences - is it necessary?
4.0 years ago
Keith Callenberg • 890
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Answer: A: Variant calling for sanger reads
4.1 years ago
Keith Callenberg • 890
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Comment: C: 23andme files uses GRCh37 or GRCh38 ?
4.3 years ago
Keith Callenberg • 890
1
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1
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1.0k
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Comment: C: Number of SNPs by target sequencing
4.3 years ago
Keith Callenberg • 890
10
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1.2k
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Forum: How can I illustrate the importance of open source software in bioinformatics for people outside the field?
genome Forum
4.3 years ago
Keith Callenberg • 890 • updated 4.3 years ago
LLTommy ♦ 1.2k
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Comment: C: How can I illustrate the importance of open source software in bioinformatics fo
4.3 years ago
Keith Callenberg • 890
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Answer: A: Is there a way to translate amino acid sequences into atomic sequences?
4.4 years ago
Keith Callenberg • 890
1
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Answer: A: List Of Cloud Genomics Companies
4.4 years ago
Keith Callenberg • 890
4
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1
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1.9k
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Answer: A: Ion Torrent sample data
4.6 years ago
Keith Callenberg • 890
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Comment: C: LIMS software for clinical NGS
4.7 years ago
Keith Callenberg • 890
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Comment: C: Tophat: # reads mapping to CDS, rRNA, intergenic?
4.9 years ago
Keith Callenberg • 890
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Comment: C: Tophat: # reads mapping to CDS, rRNA, intergenic?
4.9 years ago
Keith Callenberg • 890
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7.5k
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Answer: A: Which program, tool, or strategy do you use to visualize genomic rearrangements?
5.0 years ago
Keith Callenberg • 890
3
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2.3k
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Answer: A: combining multiple gz files in subfolders
5.1 years ago
Keith Callenberg • 890
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Job: Bioinformatics Engineer at University of Pittsburgh Medical Center, Pittsburgh, PA, USA
clinical sequencing Python Linux Job
5.1 years ago
Keith Callenberg • 890
0
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1.9k
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Comment: C: Rna-Seq : Check For Fusions With A Known Position
5.3 years ago
Keith Callenberg • 890
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Comment: C: Guessing The Quality Scale In Fastq Files
5.3 years ago
Keith Callenberg • 890
1
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19k
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Comment: C: Help a graduate student going into Bioinformatics looking for a new personal lap
5.4 years ago
Keith Callenberg • 890
1
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1
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19k
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Comment: C: Help a graduate student going into Bioinformatics looking for a new personal lap
5.4 years ago
Keith Callenberg • 890
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1
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1.0k
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Comment: C: Invitation Research Collaborations
5.5 years ago
Keith Callenberg • 890
9
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2
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1.9k
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What is the best way to transfer HiSeq data from the instrument to compute resources and/or storage?
next-gen sequencing HiSeq
5.6 years ago
Keith Callenberg • 890 • updated 5.5 years ago
zerbeb • 50
0
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Comment: C: Running Tophat --Fusion-Search On A Filtered Bam That Was Generated By Tophat
5.5 years ago
Keith Callenberg • 890
6
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22k
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Answer: A: How To Determine If Paired–End Illumina Rnaseq Reads Are Strand–Specific
5.5 years ago
Keith Callenberg • 890
0
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2.1k
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Comment: C: Problem with Pymol's orient function in certain cases
5.6 years ago
Keith Callenberg • 890
0
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1
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981
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Comment: C: corresponding gene names for probeIDs
5.6 years ago
Keith Callenberg • 890
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1.8k
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Comment: C: Bulk water residues from pdb files
5.6 years ago
Keith Callenberg • 890
0
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1
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1.8k
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Comment: C: Bulk water residues from pdb files
5.6 years ago
Keith Callenberg • 890
1
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1.8k
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Answer: A: Bulk water residues from pdb files
5.6 years ago
Keith Callenberg • 890
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1.5k
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Comment: C: bcl2fasta writing file in read only directory
5.6 years ago
Keith Callenberg • 890
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2.4k
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Comment: C: Converting .Bcl To Fasta
5.6 years ago
Keith Callenberg • 890
3
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2
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8.1k
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Answer: A: Biostar 2.0 released
6.4 years ago
Keith Callenberg • 890
3
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3
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1.4k
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How Much Energy Is Required To Unfold One Turn Of An Alpha-Helix?
protein structure secondary
8.5 years ago
Keith Callenberg • 890 • updated 8.5 years ago
Priyabrata • 60
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Comment: C: How Much Energy Is Required To Unfold One Turn Of An Alpha-Helix?
8.5 years ago
Keith Callenberg • 890
1
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2.4k
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Answer: A: The System Is Not Getting Well Minimized - Gromacs
8.6 years ago
Keith Callenberg • 890
1
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Answer: A: Best Protein Structure Minimization Algorithm
8.6 years ago
Keith Callenberg • 890
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3.1k
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Comment: C: Easy Retrieval Of Mutant Pdb Structures
8.7 years ago
Keith Callenberg • 890
2
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2.1k
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Comment: C: Need: Bowtie Executable On Ia64
8.7 years ago
Keith Callenberg • 890
3
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11k
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Answer: A: Software For Hydrogen Bond Detection In Pdb Data?
8.7 years ago
Keith Callenberg • 890
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4.4k
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Comment: C: Extracting Coordinates From Pdb File & Extracting The Region Of Interest
8.7 years ago
Keith Callenberg • 890
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Comment: C: Extracting Coordinates From Pdb File & Extracting The Region Of Interest
8.7 years ago
Keith Callenberg • 890
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6.2k
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Comment: C: Pymol-Generate Pymol Movie To Mpeg
8.7 years ago
Keith Callenberg • 890
4
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6
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4.4k
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Answer: A: Extracting Coordinates From Pdb File & Extracting The Region Of Interest
8.7 years ago
Keith Callenberg • 890
2
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0
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1.3k
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Answer: A: Replace Image To Jmol Representation After Click
8.7 years ago
Keith Callenberg • 890
1
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1.7k
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Answer: A: Library For Generating Protein Conformations
8.7 years ago
Keith Callenberg • 890
2
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2.7k
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Answer: A: Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
8.7 years ago
Keith Callenberg • 890
0
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0
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1.9k
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Comment: C: Surface Amino-Acid From Sequence Only
8.7 years ago
Keith Callenberg • 890
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1.9k
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Comment: C: Surface Amino-Acid From Sequence Only
8.7 years ago
Keith Callenberg • 890
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1.9k
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Comment: C: Surface Amino-Acid From Sequence Only
8.7 years ago
Keith Callenberg • 890
0
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0
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6.4k
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Comment: C: Free Virtual Ligand Screening Software
8.8 years ago
Keith Callenberg • 890
2
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0
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6.4k
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Answer: A: Free Virtual Ligand Screening Software
8.8 years ago
Keith Callenberg • 890
3
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1.7k
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Answer: A: Best Graphic For Homology Modeling?
8.8 years ago
Keith Callenberg • 890
1
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6.5k
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Comment: C: Gromacs: How Do I Move A Box?
8.8 years ago
Keith Callenberg • 890
1
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1.2k
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Comment: C: Joining Of Models
8.9 years ago
Keith Callenberg • 890
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3.6k
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Comment: C: Homology Modelling Steps
8.9 years ago
Keith Callenberg • 890
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2.6k
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Comment: C: Protein Structure Reconstruction
8.9 years ago
Keith Callenberg • 890
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3.0k
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Comment: C: Bioinformatics From Different Background With Different Education
8.9 years ago
Keith Callenberg • 890
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4.6k
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Comment: C: Hydrophobic Core Of Protein, Pdb
8.9 years ago
Keith Callenberg • 890
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Comment: C: Complete Protein Structure When Only Alpha Carbons Are Known
8.9 years ago
Keith Callenberg • 890
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4.1k
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Comment: C: Complete Protein Structure When Only Alpha Carbons Are Known
8.9 years ago
Keith Callenberg • 890
1
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1
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2.4k
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Answer: A: Assign Vdw Radii To A Protein Structure File (Pdb, Mol2, Etc)
8.9 years ago
Keith Callenberg • 890
0
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Comment: C: Ab-Intio Prediction Of Proteins
8.9 years ago
Keith Callenberg • 890
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0
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3.0k
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Answer: A: Structure Based Drug Designing When Active Site Is Known But No Known Inhibitors
8.9 years ago
Keith Callenberg • 890
1
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1
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5.8k
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Answer: A: Capri Criteria For Evaluating Docked Protein Complexes
8.9 years ago
Keith Callenberg • 890
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Comment: C: Capri Criteria For Evaluating Docked Protein Complexes
8.9 years ago
Keith Callenberg • 890
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0
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4.6k
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Comment: C: Hydrophobic Core Of Protein, Pdb
8.9 years ago
Keith Callenberg • 890
1
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0
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1.5k
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Answer: A: Chat Rooms For Biostar
8.9 years ago
Keith Callenberg • 890
1
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1
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1.6k
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Comment: C: Animation Of Changes In 3D Protein Conformation Due To Ph Change?
9.3 years ago
Keith Callenberg • 890
0
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1
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18k
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Answer: A: Tools To Visualize Hydrogen Bondings Between Two Different Binding Proteins?
9.3 years ago
Keith Callenberg • 890
0
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0
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2.7k
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Comment: C: Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
9.3 years ago
Keith Callenberg • 890
0
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0
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2.7k
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Comment: C: Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
9.3 years ago
Keith Callenberg • 890
1
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0
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2.7k
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Comment: C: Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
9.3 years ago
Keith Callenberg • 890
0
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0
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2.7k
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Comment: C: Command-Line Tool For Swapping Amino Acid Side-Chain Rotamers
9.3 years ago
Keith Callenberg • 890
0
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0
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7.6k
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Comment: C: Any Local Gui-Guided Blast Tools?
9.4 years ago
Keith Callenberg • 890
4
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0
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16k
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Answer: A: What Wetlab Techniques Does A Bioinformatician Need To Be Able To Perform, If An
9.4 years ago
Keith Callenberg • 890
2
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0
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2.0k
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Answer: A: How To Read And Write Several Sequences In The Format Fasta Placed In One File I
9.4 years ago
Keith Callenberg • 890
3
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1
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5.5k
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Answer: A: Protein 3D Structure Principal Axes
9.5 years ago
Keith Callenberg • 890
2
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0
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3.5k
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Answer: A: Modelling A Transmembrane Protein
9.5 years ago
Keith Callenberg • 890
1
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3.0k
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Answer: A: Do You Know Any Outer Membrane Protein Which Do Not Have A Beta-Barrel Structure
9.5 years ago
Keith Callenberg • 890
0
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0
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13k
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Comment: C: Which Operating System Do You Prefer For Bioinformatics?
9.7 years ago
Keith Callenberg • 890
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