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Daniel ♦ 3.7k
Status: New
Handle: @Daniel1123
Reputation: 3740
Email: d**************@googlemail.com
Joined: 15 months ago
Last seen: 16 months ago
Location: Cardiff University

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1
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1
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330
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Comment: C: Research Associate in Genomics / Statistical Genetics (USA)
19 months ago
Daniel ♦ 3.7k
1
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0
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319
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Answer: A: Bioinformatic tools for MyCOBIOME analysis.
21 months ago
Daniel ♦ 3.7k
1
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0
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670
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Comment: C: Bioinformatics terms that might be confusing for beginners
2.0 years ago
Daniel ♦ 3.7k
0
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1
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8.3k
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Comment: C: how to read a specific CSV file in R
4.6 years ago
Daniel ♦ 3.7k • updated 2.0 years ago
RamRS 21k
0
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1
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8.3k
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Comment: C: how to read a specific CSV file in R
4.6 years ago
Daniel ♦ 3.7k • updated 2.0 years ago
RamRS 21k
0
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0
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263
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Comment: C: Statistically defining deep branching clades in phylogenetic tree
2.1 years ago
Daniel ♦ 3.7k
1
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2
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263
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Statistically defining deep branching clades in phylogenetic tree
phylogenetics trees
2.1 years ago
Daniel ♦ 3.7k
20
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10
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6.5k
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Looking For A Command Line Version Of Ncbi Taxonomy 'Stratification' Tool
ncbi tool pipeline blast taxonomy
8.7 years ago
Daniel ♦ 3.7k • updated 2.1 years ago
gtrwst9 • 0
4
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1
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580
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Answer: A: fasta to bed format with more information that just chr locations
2.4 years ago
Daniel ♦ 3.7k
0
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0
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580
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Comment: C: fasta to bed format with more information that just chr locations
2.4 years ago
Daniel ♦ 3.7k
1
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0
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580
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Comment: C: fasta to bed format with more information that just chr locations
2.4 years ago
Daniel ♦ 3.7k
0
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0
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642
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Tutorial: How to get full taxonomy classification using taxize and myTAI
taxonomy tool R Tutorial
2.5 years ago
Daniel ♦ 3.7k
53
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13
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3.5k
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Tool: I made a DNA/gene/bioinformatics-y workshop for 11-16 year olds which people may find useful
school-outreach Tool
5.3 years ago
Daniel ♦ 3.7k • updated 2.7 years ago
Selenocysteine • 550
4
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3
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950
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Error passing generated fasta to blastn in biopython
biopython blast blastn
4.0 years ago
Daniel ♦ 3.7k • updated 2.8 years ago
Biostar 20
0
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1
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649
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Comment: C: convert illumina to fastq Sanger
2.9 years ago
Daniel ♦ 3.7k
2
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0
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4.1k
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Answer: A: FASTA file into excel file format?
3.0 years ago
Daniel ♦ 3.7k
3
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1
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2.0k
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Answer: A: Preparation for Bioinformatics.SE closing
3.3 years ago
Daniel ♦ 3.7k
2
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0
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2.0k
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Comment: C: Preparation for Bioinformatics.SE closing
3.3 years ago
Daniel ♦ 3.7k
4
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0
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2.0k
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Comment: C: Preparation for Bioinformatics.SE closing
3.3 years ago
Daniel ♦ 3.7k
1
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0
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1.1k
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Comment: C: else condition in awk
3.5 years ago
Daniel ♦ 3.7k
1
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1
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6.0k
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Comment: C: How many lanes does the Nextseq (illumina) flow cell have?
3.6 years ago
Daniel ♦ 3.7k
6
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5
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2.8k
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What is the limiting factor for trimmomatic speed and how can it be increased?
trimmomatic fastq
3.6 years ago
Daniel ♦ 3.7k
0
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0
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2.8k
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Comment: C: What is the limiting factor for trimmomatic speed and how can it be increased?
3.6 years ago
Daniel ♦ 3.7k
2
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1
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961
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Answer: A: Progress bar to measure blast running time?
3.6 years ago
Daniel ♦ 3.7k
1
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0
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1.0k
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Comment: C: Senior Bioinformatician (Jones Group, Hinxton, Cambridge UK)
3.6 years ago
Daniel ♦ 3.7k
0
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0
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1.5k
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Comment: C: fasta seq header
3.6 years ago
Daniel ♦ 3.7k
0
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1
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1.5k
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Comment: C: fasta seq header
3.6 years ago
Daniel ♦ 3.7k
1
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1
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700
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Answer: A: Fasta file edition
3.6 years ago
Daniel ♦ 3.7k
0
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0
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753
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Answer: A: analysing retrieved RNAseq datasets from GEO
3.6 years ago
Daniel ♦ 3.7k
0
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1
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17k
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Comment: C: How To Download Full Genome Sequence
3.6 years ago
Daniel ♦ 3.7k
0
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0
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1.6k
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Answer: A: Which value to be considered as significant for RNAseq pvalue or qvalue
3.6 years ago
Daniel ♦ 3.7k
0
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0
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2.6k
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Comment: C: how to analyse gene expression using RNA-seq data
3.7 years ago
Daniel ♦ 3.7k
1
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1
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1.7k
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Comment: C: 16S rRNA seq software
3.7 years ago
Daniel ♦ 3.7k
2
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1
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1.7k
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Answer: A: 16S rRNA seq software
3.7 years ago
Daniel ♦ 3.7k
0
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1.7k
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Comment: C: 16S rRNA seq software
3.7 years ago
Daniel ♦ 3.7k
3
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1
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841
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Answer: A: How to print 2 lines if first has "*" in it
3.8 years ago
Daniel ♦ 3.7k
2
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0
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841
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Comment: C: How to print 2 lines if first has "*" in it
3.8 years ago
Daniel ♦ 3.7k
1
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1
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841
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Comment: C: How to print 2 lines if first has "*" in it
3.8 years ago
Daniel ♦ 3.7k
1
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2
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4.0k
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Comment: C: MinION nanopore sequencing quality
3.8 years ago
Daniel ♦ 3.7k
1
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2
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38k
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Answer: A: The Biostar Handbook, a bioinformatics e-book for beginners
3.8 years ago
Daniel ♦ 3.7k
1
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1
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38k
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Comment: C: The Biostar Handbook, a bioinformatics e-book for beginners
3.8 years ago
Daniel ♦ 3.7k
1
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0
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1.2k
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Answer: A: Fastq to Fasta file
3.8 years ago
Daniel ♦ 3.7k
0
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0
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1.2k
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Comment: C: Fastq to Fasta file
3.8 years ago
Daniel ♦ 3.7k
0
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1
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1.2k
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Comment: C: Fastq to Fasta file
3.8 years ago
Daniel ♦ 3.7k
1
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1
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2.9k
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Answer: A: Validate QIIME pipeline using 16S rDNA amplicon data (Illumina MiSeq) already de
3.8 years ago
Daniel ♦ 3.7k
2
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0
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730
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Comment: C: Suppose you have a sequencer that can read the genome end-to-end. What aspects o
4.0 years ago
Daniel ♦ 3.7k
0
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0
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950
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Comment: C: Error passing generated fasta to blastn in biopython
4.0 years ago
Daniel ♦ 3.7k
2
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1
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800
Views
Comment: C: Biostars Logo Resized?
4.1 years ago
Daniel ♦ 3.7k
0
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1
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2.0k
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Comment: C: How to identify Transcription start sites (TSS)
4.2 years ago
Daniel ♦ 3.7k
0
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1
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1.2k
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Comment: C: condition bedtools on name column
4.2 years ago
Daniel ♦ 3.7k
0
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1
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1.2k
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Comment: C: condition bedtools on name column
4.2 years ago
Daniel ♦ 3.7k
5
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2
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1.8k
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Using pysam to parse bamfile and fetch based on bedfile, looking to speed up code.
python pysam
4.2 years ago
Daniel ♦ 3.7k
1
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0
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1.2k
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Comment: C: Error when using NcbiblastnCommandline
4.2 years ago
Daniel ♦ 3.7k
1
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0
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1.6k
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Answer: A: Learn to develop bioinformatics tools
4.2 years ago
Daniel ♦ 3.7k
0
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0
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1.6k
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Answer: A: Biopython construct a sequence from multiple reads
4.2 years ago
Daniel ♦ 3.7k
1
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0
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1.3k
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Answer: A: Very slow Bio-linux on VirtualBox?
4.2 years ago
Daniel ♦ 3.7k
0
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0
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1.3k
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Comment: C: Oncology Bioinformatics - System Administrator Clinical Genomics Platform (m/f)
4.2 years ago
Daniel ♦ 3.7k
0
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0
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664
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Comment: C: Good text or video explaining what sequence alignment is to an undergrad
4.2 years ago
Daniel ♦ 3.7k
4
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1
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3.5k
Views
Comment: C: I made a DNA/gene/bioinformatics-y workshop for 11-16 year olds which people may
4.2 years ago
Daniel ♦ 3.7k
1
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1
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629
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Answer: A: How to subset the fasta sequence starting with "G"?
4.3 years ago
Daniel ♦ 3.7k
4
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2
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4.0k
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Otu Percentage Identity Related To Taxon Level
taxonomy
7.6 years ago
Daniel ♦ 3.7k • updated 4.3 years ago
Rob • 0
0
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0
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2.6k
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Answer: A: Fastest way to search barcode string with two mismatchs in fastq file using perl
4.3 years ago
Daniel ♦ 3.7k
0
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0
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798
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Comment: C: Best way to determine gene positions in a related strain, from a well annotated
4.4 years ago
Daniel ♦ 3.7k
1
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2
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798
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Best way to determine gene positions in a related strain, from a well annotated reference? (and plus some RNAseq?)
maker anotation
4.4 years ago
Daniel ♦ 3.7k • updated 4.4 years ago
shaun • 80
1
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0
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816
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Answer: A: perl programming for finding sequenc
4.4 years ago
Daniel ♦ 3.7k
0
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0
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2.8k
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Comment: C: Qiime file for Krona pie chart?
4.4 years ago
Daniel ♦ 3.7k
3
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0
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732
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Answer: A: fasta sequence manupulation
4.4 years ago
Daniel ♦ 3.7k
3
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0
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5.5k
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Comment: C: Good Habit for Bioinformatics Analyst or Scientist
4.4 years ago
Daniel ♦ 3.7k
2
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1
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32k
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Answer: A: FPKM vs raw counts vs RPKM
4.4 years ago
Daniel ♦ 3.7k
1
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1
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855
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Answer: A: Genome Browsers with BAM viewing capabilitites - Debian
4.4 years ago
Daniel ♦ 3.7k
5
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0
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1.5k
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Answer: A: only a few differential expressed genes
4.4 years ago
Daniel ♦ 3.7k
2
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0
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629
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Answer: A: how we can get the accession number of an experiment
4.4 years ago
Daniel ♦ 3.7k
1
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2
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1.3k
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Comment: C: One Stop Solution for NGS Data Analysis
4.4 years ago
Daniel ♦ 3.7k
0
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0
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2.3k
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Answer: A: how to substitue Nth character in a string using linux commands
4.5 years ago
Daniel ♦ 3.7k
0
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2
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1.3k
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Answer: A: Venn diagram for annotation results
4.5 years ago
Daniel ♦ 3.7k
1
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0
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959
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Comment: C: Python or shell scripting code ro count individual mapped reads of amplicons
4.5 years ago
Daniel ♦ 3.7k
0
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0
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2.7k
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Answer: A: error of samtools sort
4.5 years ago
Daniel ♦ 3.7k
0
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1
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1.1k
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Comment: C: statistical value meaning
4.5 years ago
Daniel ♦ 3.7k
0
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0
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1.1k
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Comment: C: statistical value meaning
4.5 years ago
Daniel ♦ 3.7k
1
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0
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1.0k
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Answer: A: reference genome for 16S rDNA sequences in NGS analysis
4.5 years ago
Daniel ♦ 3.7k
1
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0
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6.0k
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Answer: A: How I can make an open reading frame finder with Python ?
4.5 years ago
Daniel ♦ 3.7k
15
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1
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9.7k
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Answer: A: venndiagram for 6 sets
4.5 years ago
Daniel ♦ 3.7k
0
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1
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1.9k
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Comment: C: SOAPaligner 2.21 - does it replace all Ns by Gs in reads?
4.5 years ago
Daniel ♦ 3.7k
1
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1
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1.3k
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Answer: A: How to download multiple sequences from a database (ie Genbank) in Perl given a
4.5 years ago
Daniel ♦ 3.7k
3
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17
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5.2k
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join non-overlapping paired-end reads
illumina paired-end
6.3 years ago
Daniel ♦ 3.7k • updated 4.6 years ago
infenit101 • 20
0
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1
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1.2k
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Comment: C: If I am right about fold change in RNA-seq
4.6 years ago
Daniel ♦ 3.7k
1
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1
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1.2k
Views
Comment: C: If I am right about fold change in RNA-seq
4.6 years ago
Daniel ♦ 3.7k
0
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1
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1.2k
Views
Comment: C: If I am right about fold change in RNA-seq
4.6 years ago
Daniel ♦ 3.7k
0
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1
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1.2k
Views
Comment: C: If I am right about fold change in RNA-seq
4.6 years ago
Daniel ♦ 3.7k
1
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1
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1.2k
Views
Answer: A: If I am right about fold change in RNA-seq
4.6 years ago
Daniel ♦ 3.7k
1
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0
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2.4k
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Comment: C: Explain bioinformatics to a 10 year old
4.6 years ago
Daniel ♦ 3.7k
1
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1
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1.1k
Views
Answer: A: getting annotation for a list of genes
4.6 years ago
Daniel ♦ 3.7k
1
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2
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3.8k
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Comment: C: Bioinformatics Mobile App
4.6 years ago
Daniel ♦ 3.7k
0
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1
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3.8k
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Comment: C: Bioinformatics Mobile App
4.6 years ago
Daniel ♦ 3.7k
0
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0
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650
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Comment: C: Can a lack of exome coverage disproportionately call snRNAs as significantly cha
4.6 years ago
Daniel ♦ 3.7k
2
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3
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650
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Can a lack of exome coverage disproportionately call snRNAs as significantly changing (and hide standard genes)?
RNA-Seq snRNA
4.6 years ago
Daniel ♦ 3.7k • updated 4.6 years ago
Dan Gaston 7.1k
1
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0
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2.1k
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Answer: A: Bacteria identification using 16s rRNA sequencing data
4.6 years ago
Daniel ♦ 3.7k
0
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0
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1.4k
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Comment: C: RNAseq comparisons (tophat->HTSeq->edgeR) return only a few sig diffs, and all s
4.6 years ago
Daniel ♦ 3.7k
0
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0
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2.1k
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Comment: C: Bacteria identification using 16s rRNA sequencing data
4.6 years ago
Daniel ♦ 3.7k
0
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1
Reply
1.4k
Views
Comment: C: RNAseq comparisons (tophat->HTSeq->edgeR) return only a few sig diffs, and all s
4.6 years ago
Daniel ♦ 3.7k
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