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Comment: Comment: First experiences matter
3 months ago by Michael Love ★ 2.6k
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0
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2.0k
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Comment: Comment: First experiences matter
3 months ago by Michael Love ★ 2.6k
3
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2
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2.0k
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Comment: Comment: First experiences matter
3 months ago by Michael Love ★ 2.6k
1
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0
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978
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Comment: Comment: Number of accessible regions included by DESeq2 to generate the PCA plot with th
6 months ago by Michael Love ★ 2.6k
1
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0
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1.1k
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Answer: Answer: Pre-Filtering and Independent Filtering DESeq2
9 months ago by Michael Love ★ 2.6k
2
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0
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948
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Comment: Comment: How reproducible is transcript quantification through salmon?
updated 9 months ago by 82k • written 9 months ago by ★ 2.6k
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2
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2.0k
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Answer: Answer: error with Tximport when txOut = TRUE
9 months ago by Michael Love ★ 2.6k
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0
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2.2k
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Comment: Comment: DESeq2 error while using apeglm - optimHess
11 months ago by Michael Love ★ 2.6k
0
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0
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757
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Comment: Comment: How does salmon uses polyester?
11 months ago by Michael Love ★ 2.6k
0
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0
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11k
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Comment: Comment: fold change vs standardized effect size
22 months ago by Michael Love ★ 2.6k
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0
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1.6k
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Comment: Comment: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
22 months ago by Michael Love ★ 2.6k
1
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0
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1.2k
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Comment: Comment: lfcShrink MA plot comparison
2.1 years ago by Michael Love ★ 2.6k
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0
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2.4k
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Comment: Comment: DESeq2 shrinking log fold-change
2.2 years ago by Michael Love ★ 2.6k
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1
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2.4k
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Comment: Comment: DESeq2 shrinking log fold-change
2.2 years ago by Michael Love ★ 2.6k
0
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1
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2.4k
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Answer: Answer: DESeq2 shrinking log fold-change
2.2 years ago by Michael Love ★ 2.6k
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1
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1.5k
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Answer: Answer: DESeq2/Differential expression analysis without replicates
2.2 years ago by Michael Love ★ 2.6k
6
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1
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1.1k
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Answer: Answer: Is there a minimum read count or number of genes for Salmon bias correction?
2.2 years ago by Michael Love ★ 2.6k
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0
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852
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Comment: Comment: fishpond RNA-seq analysis: Two genotype and four treatments
2.2 years ago by Michael Love ★ 2.6k
1
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1
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852
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Answer: Answer: fishpond RNA-seq analysis: Two genotype and four treatments
2.2 years ago by Michael Love ★ 2.6k
2
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0
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1.2k
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Answer: Answer: salmon quantification and then generating BAM files using STAR
2.3 years ago by Michael Love ★ 2.6k
0
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0
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1.1k
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Answer: Answer: Mendelian Randomisation with GTEx data
2.3 years ago by Michael Love ★ 2.6k
4
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0
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1.2k
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Answer: Answer: DEG analysis from Salmon quantification of 3' TagSeq reads with unannotated refe
2.3 years ago by Michael Love ★ 2.6k
2
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0
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1.9k
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Answer: Answer: how to understand the P value of the Deseq2 results
3.0 years ago by Michael Love ★ 2.6k
4
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0
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1.2k
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Comment: C: Gene ID problems when mapping and counting
3.1 years ago by Michael Love ★ 2.6k
1
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0
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2.1k
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Answer: A: DESEq2 error - 'DESeqDataSet' object superclass 'RectangularData' not defined in
3.2 years ago by Michael Love ★ 2.6k
1
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0
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2.8k
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Answer: C: How is the bootstrapping information from kallisto treated in DeSeq2 when import
3.6 years ago by Michael Love ★ 2.6k
2
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1
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4.0k
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Comment: C: DESeq2 analysis with covariates with and without log transformation
3.8 years ago by Michael Love ★ 2.6k
1
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1
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4.0k
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Answer: A: DESeq2 analysis with covariates with and without log transformation
3.8 years ago by Michael Love ★ 2.6k
1
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1
reply
2.1k
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Comment: C: Transcript level counts from full length scRNA data
3.8 years ago by Michael Love ★ 2.6k
1
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0
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2.5k
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Comment: C: When should one be concerned about the CG content in RNA-seq experiment?
4.0 years ago by Michael Love ★ 2.6k
7
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0
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5.7k
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Answer: A: How to import RSEM results to DESeq2 for differential analysis
updated 4.1 years ago by 82k • written 6.4 years ago by ★ 2.6k
2
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1
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9.8k
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Answer: C: Is a simple Wilcoxon rank sum test good enough to identify differentially expres
4.2 years ago by Michael Love ★ 2.6k
0
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1
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6.1k
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Comment: C: Reviewing a MOOC: HarvardX - PH525x Data Analysis for Genomics
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.6k
2
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1
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6.1k
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Comment: C: Reviewing a MOOC: HarvardX - PH525x Data Analysis for Genomics
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.6k
0
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1
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8.8k
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Answer: A: To What Degree Could We Determine Whether A Gene Is Expressed?
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 2.6k
1
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0
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5.7k
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Comment: C: R Deseq2 Error: Inv(): Matrix Appears To Be Singular
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 2.6k
1
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1
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6.7k
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Comment: C: DESeq2 multiple factor design clarification
updated 4.5 years ago by 43k • written 8.9 years ago by ★ 2.6k
0
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0
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1.4k
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Comment: C: model design in rna seq - deseq2
5.1 years ago by Michael Love ★ 2.6k
5
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1
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31k
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Comment: C: How is the design in DESeq2 work?
5.4 years ago by Michael Love ★ 2.6k
0
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0
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2.5k
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Comment: C: Pair-wise DESeq Analysis with 3 Factor Levels - RNA-Seq
5.4 years ago by Michael Love ★ 2.6k
3
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2
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4.2k
views
Answer: Answer: Is inspection and correction of pvalues still needed in DESeq2?
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.6k
1
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2
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8.1k
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Answer: A: "Duplicate rownames not allowed" when the rownames are not duplicated
5.5 years ago by Michael Love ★ 2.6k
0
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2
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4.3k
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Comment: C: Deseq2 question of a single factor with 3 levels
6.3 years ago by Michael Love ★ 2.6k
1
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0
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3.4k
views
Comment: C: Changes log2FC values of DESeq2
6.3 years ago by Michael Love ★ 2.6k
2
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1
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65k
views
Comment: C: How do I explain the difference between edgeR, LIMMA, DESeq etc. to experimental
6.4 years ago by Michael Love ★ 2.6k
0
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0
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2.7k
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Comment: C: Strange distribution of logFC
6.4 years ago by Michael Love ★ 2.6k
0
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0
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3.2k
views
Comment: C: Zero read count with deseq2
6.4 years ago by Michael Love ★ 2.6k
0
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0
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2.7k
views
Answer: A: what's the meaning of a Concordance at the Top plot(CAT plot)
6.5 years ago by Michael Love ★ 2.6k
7
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1
reply
26k
views
Answer: A: Gene Set Enrichment Analysis after DESeq2
6.5 years ago by Michael Love ★ 2.6k
1
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0
replies
4.1k
views
Comment: C: Changes to dispersion estimates in DESeq2?
6.6 years ago by Michael Love ★ 2.6k
131 results • Page 1 of 3
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