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Rory Stark • 510
Status: New
Handle: @Rory Stark10855
Reputation: 510
Joined: 19 months ago
Last seen: 20 months ago
Location: University of Cambridge, Cancer Research UK - Cambridge Institute

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110
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Answer: A: Diffbind affinity based analysis
20 months ago
Rory Stark • 510
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251
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Answer: A: how to retrieve binding affinity matrix in diffbind
21 months ago
Rory Stark • 510
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2
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384
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Comment: C: DiffBind: Error in `.rowNamesDF<-`(x, value = value) : invalid 'row.names' lengt
22 months ago
Rory Stark • 510
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374
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Answer: A: create a RC matrix with narrowPeak data
2.5 years ago
Rory Stark • 510
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502
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Answer: A: How to correlate chip seq peaks?
2.5 years ago
Rory Stark • 510
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536
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Comment: C: question about DiffBind
2.5 years ago
Rory Stark • 510
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1.1k
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Answer: A: Diffbind for ATAC-seq data with no controls
2.7 years ago
Rory Stark • 510
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1.1k
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Answer: A: Diffbind - Very high proportion of significant peaks
2.8 years ago
Rory Stark • 510
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534
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Answer: A: Diffbind error : sequences from an unspecified genome; no seqlengths
2.8 years ago
Rory Stark • 510
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1.8k
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Answer: A: What is the best method ChIPseq differential binding analysis?
2.9 years ago
Rory Stark • 510
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760
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Comment: C: DiffBind - Erroneous Affinity Shift In One Direction
3.0 years ago
Rory Stark • 510
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1
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760
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Answer: A: DiffBind - Erroneous Affinity Shift In One Direction
3.0 years ago
Rory Stark • 510
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512
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Answer: A: Diffbind package DESeq2 analysis
3.0 years ago
Rory Stark • 510
5
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1.7k
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Answer: A: Huge difference between differential peaks with EdgeR and DESeq2 using Diffbind
3.3 years ago
Rory Stark • 510
3
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1000
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Answer: A: [How to Save plots in R] DiffBind
3.3 years ago
Rory Stark • 510
5
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1
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3.6k
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Answer: A: Visualization for ChIP-seq analysis
3.3 years ago
Rory Stark • 510
2
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914
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Answer: A: Convert DiffBind output to standard BED or NarrowPeak format
3.3 years ago
Rory Stark • 510
3
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2.0k
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Answer: A: How many biological replicates needed for ChIP seq experiments?
3.3 years ago
Rory Stark • 510
1
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1
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2.5k
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Answer: A: Converting narrowPeak to bed
3.3 years ago
Rory Stark • 510
1
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1
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808
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Answer: A: Comparison of ChIPseq enrichment in specific regions
3.7 years ago
Rory Stark • 510
10
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3.2k
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Tool: ChIPQC: a package for assessing quality of ChIP-seq samples and experiments
ChIP-Seq quality assessment quality control Tool
6.8 years ago
Rory Stark • 510 • updated 5.8 years ago
Ming Tang ♦ 2.5k
5
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4.8k
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Answer: A: Chips-Seq Replicates And Motif Discovery: What Is The Most Sound Way To Deal Wit
6.8 years ago
Rory Stark • 510
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3.3k
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Comment: C: Replicates In Chip-Seq
6.8 years ago
Rory Stark • 510
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