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395
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cnetplot enrichment graph to cytoscape
clusterprofiler cnetplot enrichplot
10 months ago by Omics data mining ▴ 260
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1
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631
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Comment: Comment: Spatial transcriptome analysis
11 months ago by Omics data mining ▴ 260
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0
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1.6k
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from seurat to scanpy data conversion and re-scaling
transctiptome eurat scanpy conversion spatial
11 months ago by Omics data mining ▴ 260
1
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1
reply
939
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Right assay and slot for the extraction of normalized data after "sct normalization" and "anchor based integration"
single normalization integration cell sct anchor seurat based
updated 12 months ago by ★ 1.8k • written 12 months ago by ▴ 260
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1
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462
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pipeline for correlation of RNASeq and Methylation data
rnaseq methylation correlation normalization data
updated 12 months ago by ★ 2.9k • written 12 months ago by ▴ 260
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1
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556
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Customizable pvalue scales in clusterprofiler
clusterprofiler
updated 12 months ago by 13k • written 12 months ago by ▴ 260
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0
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841
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Comment: Comment: clusterprofiler dotplot facet_grid plot based on ONTOLOGY
12 months ago by Omics data mining ▴ 260
2
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2
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841
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clusterprofiler dotplot facet_grid plot based on ONTOLOGY
dotplot clusterprofiler facet_grid
12 months ago by Omics data mining ▴ 260
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0
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329
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normalization and integration of two independent single cell cohorts
single-cell batch-effect normalization
updated 12 months ago by 43k • written 12 months ago by ▴ 260
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1
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1.1k
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normalized score for SpatialFeaturePlot
Spatial Transcriptome normalization integration Seurat
updated 13 months ago by ★ 1.8k • written 13 months ago by ▴ 260
2
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1
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3.1k
views
Comment: Comment: How to include spatial coordinate data into anndata within scanpy
13 months ago by Omics data mining ▴ 260
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0
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634
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Comment: Comment: Visualization of Enrichment score for spatial 10x visium samples
14 months ago by Omics data mining ▴ 260
1
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2
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634
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Visualization of Enrichment score for spatial 10x visium samples
visium transctiptome 10x enrichment scores spatial
14 months ago by Omics data mining ▴ 260
1
vote
2
replies
602
views
deconvolution of spatial transcriptome
deconvolution spatial transcriptome
updated 14 months ago by ★ 3.9k • written 15 months ago by ▴ 260
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1
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1.7k
views
change color and scale in SpatialFeaturePlot
clustering Seurat spatial-transcriptome
updated 15 months ago by 43k • written 15 months ago by ▴ 260
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0
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950
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error plotting spatial data in scanpy
scanpy spatial-transcriptome
updated 15 months ago by 43k • written 15 months ago by ▴ 260
2
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0
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513
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Input at BINDetect step (for TOBIAS pipeline) with multiple files
differential ATAC-Seq tobias motifs
15 months ago by Omics data mining ▴ 260
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0
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3.2k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
15 months ago by Omics data mining ▴ 260
0
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1
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3.2k
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Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
15 months ago by Omics data mining ▴ 260
0
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1
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3.2k
views
Comment: Comment: error in pipeline installation dependent on numpy version 1.18.5
15 months ago by Omics data mining ▴ 260
1
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6
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3.2k
views
error in pipeline installation dependent on numpy version 1.18.5
cnn numpy imaging python
15 months ago by Omics data mining ▴ 260
3
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8
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6.3k
views
bait interval list for picard collecthsmetrices
picard alignment exome
12 months ago by Omics data mining ▴ 260
1
vote
1
reply
507
views
DESeq2 with multiple conditional data
multi differential DESeq2 genes factor
updated 16 months ago by 13k • written 16 months ago by ▴ 260
8
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6
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3.1k
views
How to include spatial coordinate data into anndata within scanpy
scanpy visium transcriptome spatial 10X
updated 3 months ago by • 0 • written 18 months ago by ▴ 260
1
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1
reply
481
views
Batch effect of sequencing data that were sequenced in different locations
effect batch DESeq2
updated 18 months ago by 81k • written 18 months ago by ▴ 260
0
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0
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421
views
Error plotting the markers in sc.pl.rank_genes_groups_dotplot
scanpy trasncriptome seurat spatial
18 months ago by Omics data mining ▴ 260
0
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1
reply
473
views
identification of overlapped, proximal and distal gene for peak regions
chip idenfication peak seq gene
updated 18 months ago by ▴ 410 • written 18 months ago by ▴ 260
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0
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1.0k
views
Comment: Comment: nested elements in bed file using awk
19 months ago by Omics data mining ▴ 260
0
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0
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550
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Comment: Comment: cluster identification and DEGs in single cell data
19 months ago by Omics data mining ▴ 260
1
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2
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550
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cluster identification and DEGs in single cell data
deg cluster seurat analysis
19 months ago by Omics data mining ▴ 260
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2
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1.0k
views
Comment: Comment: nested elements in bed file using awk
19 months ago by Omics data mining ▴ 260
3
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6
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1.0k
views
nested elements in bed file using awk
coordinates bedops genome awk
19 months ago by Omics data mining ▴ 260
0
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1
reply
913
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Comment: Comment: MOTIF IDENTIFICATION IN RNA SEQUENCES
19 months ago by Omics data mining ▴ 260
4
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1
reply
1.0k
views
SCTransform in single cell
SCTransform seurat
updated 19 months ago by 141k • written 19 months ago by ▴ 260
0
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0
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606
views
Comment: Comment: overlap statistics among multiple bed files
19 months ago by Omics data mining ▴ 260
0
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0
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477
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Comment: Comment: exportFASTA not working
19 months ago by Omics data mining ▴ 260
0
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1
reply
606
views
Comment: Comment: overlap statistics among multiple bed files
19 months ago by Omics data mining ▴ 260
1
vote
4
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606
views
overlap statistics among multiple bed files
bedtools
updated 10 months ago by 43k • written 19 months ago by ▴ 260
0
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2
replies
477
views
exportFASTA not working
exportFASTA biomart getSeq
19 months ago by Omics data mining ▴ 260
0
votes
2
replies
512
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Filteration of uniquely mapped reads
samtools bam
updated 10 months ago by 43k • written 19 months ago by ▴ 260
1
vote
0
replies
624
views
Comment: Comment: Identifying DEG's on Integrated samples
19 months ago by Omics data mining ▴ 260
1
vote
2
replies
913
views
Comment: Comment: MOTIF IDENTIFICATION IN RNA SEQUENCES
19 months ago by Omics data mining ▴ 260
0
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0
replies
1.6k
views
Comment: Comment: conda env in snakemake
19 months ago by Omics data mining ▴ 260
0
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1
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1.6k
views
Comment: Comment: conda env in snakemake
19 months ago by Omics data mining ▴ 260
0
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4
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1.6k
views
conda env in snakemake
snakemake conda
19 months ago by Omics data mining ▴ 260
0
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1
reply
2.8k
views
SCTransform + Harmony in Seurat for batch correction
batch transcriptome spatial correction Seurat
updated 23 months ago by ▴ 10 • written 2.1 years ago by ▴ 260
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0
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556
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Comment: Comment: from dexseq results to alternative splicing events identification
2.1 years ago by Omics data mining ▴ 260
0
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0
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392
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calculate the variance across the samples
10X spatial cell single visium
2.1 years ago by Omics data mining ▴ 260
0
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2
replies
556
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from dexseq results to alternative splicing events identification
dexseq alternative splicing
2.1 years ago by Omics data mining ▴ 260
0
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2
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830
views
Differential transcript usage from Salmon data
DTU rnaseqDTU transcript differential stageR
updated 15 months ago by ▴ 120 • written 2.2 years ago by ▴ 260
161 results • Page 1 of 4
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