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st.ph.n ♦ 2.5k
Status: New
Handle: @st.ph.n10041
Reputation: 2450
Email: t**********@temple.edu
Joined: 13 months ago
Last seen: 15 months ago
Location: Philadelphia, PA

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2.5k
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C: Using trimmomatic on multiple single-end read files
13 months ago
st.ph.n ♦ 2.5k
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0
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142
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C: Plotting Bar charts in R
14 months ago
st.ph.n ♦ 2.5k
1
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1
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162
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A: Writing a bash loop to convert sams to bams
14 months ago
st.ph.n ♦ 2.5k
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1
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223
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C: Trouble with BLAST using Biopython
14 months ago
st.ph.n ♦ 2.5k
1
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1
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215
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A: Split comma seperated list of GO terms into multiple rows and maintain gene iden
15 months ago
st.ph.n ♦ 2.5k
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303
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C: Mapping both PE reads and Single-end reads into transcriptome
20 months ago
st.ph.n ♦ 2.5k
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1
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423
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C: BioPython local blast different results than blast+ local blast
24 months ago
st.ph.n ♦ 2.5k
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1.4k
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C: tab to fasta file conversion
2.0 years ago
st.ph.n ♦ 2.5k
1
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294
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C: changing the position of a column from a file to another in perl
2.0 years ago
st.ph.n ♦ 2.5k
1
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0
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807
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C: Batch rename *fastq.gz files using regular expression
2.0 years ago
st.ph.n ♦ 2.5k
1
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1
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807
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C: Batch rename *fastq.gz files using regular expression
2.0 years ago
st.ph.n ♦ 2.5k
4
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1
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807
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A: Batch rename *fastq.gz files using regular expression
2.0 years ago
st.ph.n ♦ 2.5k
2
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0
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635
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A: headers from multifasta files
2.2 years ago
st.ph.n ♦ 2.5k
1
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1
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653
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C: Finding pairwise alignment between two multifasta files for similarity search
2.2 years ago
st.ph.n ♦ 2.5k
2
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0
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410
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C: downloading 1000 genomes project bam files in the background
2.2 years ago
st.ph.n ♦ 2.5k
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236
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C: Translating Plant DNA to protein
2.2 years ago
st.ph.n ♦ 2.5k
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582
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C: help in converting a table
2.3 years ago
st.ph.n ♦ 2.5k
2
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0
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463
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C: Removing a chromosome from a fasta file
2.3 years ago
st.ph.n ♦ 2.5k
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0
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582
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C: help in converting a table
2.3 years ago
st.ph.n ♦ 2.5k
0
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1
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582
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C: help in converting a table
2.3 years ago
st.ph.n ♦ 2.5k
1
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2
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582
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A: help in converting a table
2.3 years ago
st.ph.n ♦ 2.5k
2
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0
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740
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C: changing header name in fasta file
2.3 years ago
st.ph.n ♦ 2.5k
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2
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461
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C: how to separate/split numbers
2.3 years ago
st.ph.n ♦ 2.5k
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1
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461
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C: how to separate/split numbers
2.3 years ago
st.ph.n ♦ 2.5k
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1
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461
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A: how to separate/split numbers
2.3 years ago
st.ph.n ♦ 2.5k
1
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0
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447
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C: extract postion motif from fasta file
2.3 years ago
st.ph.n ♦ 2.5k
1
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0
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2.4k
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C: blast using python
2.4 years ago
st.ph.n ♦ 2.5k
1
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0
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864
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C: Any ideas on converting IUPAC ambiguity codes in a fasta file
2.4 years ago
st.ph.n ♦ 2.5k
2
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1
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864
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A: Any ideas on converting IUPAC ambiguity codes in a fasta file
2.4 years ago
st.ph.n ♦ 2.5k
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1
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1.3k
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C: Rename FASTA files according to FASTA file header
2.4 years ago
st.ph.n ♦ 2.5k
2
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1
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1.3k
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C: Rename FASTA files according to FASTA file header
2.4 years ago
st.ph.n ♦ 2.5k
0
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0
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516
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C: split seq in fasta file in groups according to seq similarity?
2.4 years ago
st.ph.n ♦ 2.5k
1
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1
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441
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C: Comparing 2 Columns at once
2.4 years ago
st.ph.n ♦ 2.5k
0
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1
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516
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C: split seq in fasta file in groups according to seq similarity?
2.4 years ago
st.ph.n ♦ 2.5k
1
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0
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1.1k
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C: How to rename multiple file name
2.4 years ago
st.ph.n ♦ 2.5k
9
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4
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1.4k
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Get trace data for all four bases from ab1 file
ab1 sanger trace chromatogram
2.5 years ago
st.ph.n ♦ 2.5k • updated 2.5 years ago
sacha ♦ 1.7k
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1
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1.4k
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C: Get trace data for all four bases from ab1 file
2.5 years ago
st.ph.n ♦ 2.5k
4
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0
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701
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A: Binning fasta sequences by size?
2.5 years ago
st.ph.n ♦ 2.5k
0
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0
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574
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C: Python: grep the strings whiitn "[ ]"
2.5 years ago
st.ph.n ♦ 2.5k
1
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1
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916
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C: How Can I get a list of sequences in fasta format from the Blast output hits?
2.5 years ago
st.ph.n ♦ 2.5k
1
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0
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574
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A: Python: grep the strings whiitn "[ ]"
2.5 years ago
st.ph.n ♦ 2.5k
0
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0
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1.6k
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C: How to remove reads from fastq flle that match to a set of reads in my fasta fil
2.5 years ago
st.ph.n ♦ 2.5k
0
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1
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1.6k
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C: How to remove reads from fastq flle that match to a set of reads in my fasta fil
2.5 years ago
st.ph.n ♦ 2.5k
1
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1
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1.6k
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C: How to remove reads from fastq flle that match to a set of reads in my fasta fil
2.5 years ago
st.ph.n ♦ 2.5k
0
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0
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825
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C: Difficulty in python while loop
2.6 years ago
st.ph.n ♦ 2.5k
2
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0
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1.3k
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A: parsing fastq files in python
2.6 years ago
st.ph.n ♦ 2.5k
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0
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2.9k
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A: How to remove Bad Nucleotides represented by "N" from FASTA file by using UNIX?
2.6 years ago
st.ph.n ♦ 2.5k
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1
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2.9k
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C: How to remove Bad Nucleotides represented by "N" from FASTA file by using UNIX?
2.6 years ago
st.ph.n ♦ 2.5k
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0
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607
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C: Dual demultiplexing on illumina sequences
2.6 years ago
st.ph.n ♦ 2.5k
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0
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607
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C: Dual demultiplexing on illumina sequences
2.6 years ago
st.ph.n ♦ 2.5k
2
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0
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2.8k
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A: Find consensus sequence of several DNA sequences
2.6 years ago
st.ph.n ♦ 2.5k
0
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0
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552
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C: Trying to get a GREP of things...
2.6 years ago
st.ph.n ♦ 2.5k
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1
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552
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C: Trying to get a GREP of things...
2.6 years ago
st.ph.n ♦ 2.5k
0
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1
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734
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C: Help with Fastq-Tools Install
2.6 years ago
st.ph.n ♦ 2.5k
0
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1
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734
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C: Help with Fastq-Tools Install
2.6 years ago
st.ph.n ♦ 2.5k
0
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0
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772
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C: Fail running blastdb and blastn on my own computer
2.6 years ago
st.ph.n ♦ 2.5k
0
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0
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772
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C: Fail running blastdb and blastn on my own computer
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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772
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C: Fail running blastdb and blastn on my own computer
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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772
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C: Fail running blastdb and blastn on my own computer
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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772
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C: Fail running blastdb and blastn on my own computer
2.7 years ago
st.ph.n ♦ 2.5k
0
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2
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1.1k
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C: installing bwa for linux 32 bits
2.7 years ago
st.ph.n ♦ 2.5k
1
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0
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388
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A: Write List of subject ID numbers to a new text file(s)
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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573
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C: Looking for Zebrafish v10 multiple genome alignment or phastCons track
2.7 years ago
st.ph.n ♦ 2.5k
0
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0
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1.6k
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C: Extract Sequence From Fasta and remove some characters before printing
2.7 years ago
st.ph.n ♦ 2.5k
2
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1
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1.6k
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A: Extract Sequence From Fasta and remove some characters before printing
2.7 years ago
st.ph.n ♦ 2.5k
2
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1
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980
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C: For loop script
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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621
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C: Set up a blast remote server
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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621
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A: Set up a blast remote server
2.7 years ago
st.ph.n ♦ 2.5k
1
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1
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765
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A: How to retrieve rows from OTU table
2.7 years ago
st.ph.n ♦ 2.5k
1
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0
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550
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A: Extract the targeted txt using python
2.7 years ago
st.ph.n ♦ 2.5k
0
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0
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691
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C: Remove lines of BLAST output based on two criteria
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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1.4k
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A: VCF files examples
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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742
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C: transcript and fasta sequence
2.7 years ago
st.ph.n ♦ 2.5k
2
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1
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552
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C: added missing bases at the beginning of a sequences
2.7 years ago
st.ph.n ♦ 2.5k
0
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0
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761
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C: how to make short custom reference sequence to use in RNA-seq alignment
2.7 years ago
st.ph.n ♦ 2.5k
0
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0
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6.5k
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C: Extraction of first sequences from a big fasta file
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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761
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C: how to make short custom reference sequence to use in RNA-seq alignment
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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761
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C: how to make short custom reference sequence to use in RNA-seq alignment
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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640
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C: blastn blastdbcheck errors
2.7 years ago
st.ph.n ♦ 2.5k
0
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1
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583
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C: Best Blast Hits from Tabular Outputs in Multiple files
2.7 years ago
st.ph.n ♦ 2.5k
0
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0
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780
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C: Error of Trinity Abundance estimation using RSEM
2.7 years ago
st.ph.n ♦ 2.5k
3
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0
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780
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A: Error of Trinity Abundance estimation using RSEM
2.7 years ago
st.ph.n ♦ 2.5k
1
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0
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503
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C: How to manage a database of sequences
2.8 years ago
st.ph.n ♦ 2.5k
0
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0
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983
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C: What does the "N" column mean of the TBLASTX output?
2.8 years ago
st.ph.n ♦ 2.5k
0
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0
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1.3k
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C: NGS DATA ANALYSIS
2.8 years ago
st.ph.n ♦ 2.5k
1
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0
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730
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A: RunningTBLASTN many times with python
2.8 years ago
st.ph.n ♦ 2.5k
1
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0
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997
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C: How to limit/filter BLAST results using NcbiblastnCommandline
2.8 years ago
st.ph.n ♦ 2.5k
0
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0
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571
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C: conditional replacing rows with 9
2.8 years ago
st.ph.n ♦ 2.5k
0
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0
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1.6k
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C: How to Run the Script for Extracting Splice Sites from the Gene Annotation File
2.8 years ago
st.ph.n ♦ 2.5k
0
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1
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988
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C: Best Alignment tool of Denovo assembly Results.
2.8 years ago
st.ph.n ♦ 2.5k
2
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1
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553
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A: Iterating over different variables in bash script
2.8 years ago
st.ph.n ♦ 2.5k
1
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0
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553
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C: Iterating over different variables in bash script
2.8 years ago
st.ph.n ♦ 2.5k
1
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0
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626
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C: Genomics book for a computer scientist
2.8 years ago
st.ph.n ♦ 2.5k
2
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0
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1.2k
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C: Convert a FASTA Amino Acid Sequence to RNA (Reverse Central Dogma)
2.8 years ago
st.ph.n ♦ 2.5k
1
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0
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1.2k
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C: perl script for concatenating (multiple fasta sequences in a single file), creat
2.8 years ago
st.ph.n ♦ 2.5k
6
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1
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1.2k
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A: perl script for concatenating (multiple fasta sequences in a single file), creat
2.8 years ago
st.ph.n ♦ 2.5k
0
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0
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689
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C: Trimming local GB file with Biopython
2.8 years ago
st.ph.n ♦ 2.5k
2
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1
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571
Views
A: conditional replacing rows with 9
2.8 years ago
st.ph.n ♦ 2.5k
1
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1
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689
Views
C: Trimming local GB file with Biopython
2.8 years ago
st.ph.n ♦ 2.5k
1
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0
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2.7k
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C: Split the multiple sequences file into a separate files
2.8 years ago
st.ph.n ♦ 2.5k
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