Biostar Beta. Not for public use.
st.ph.n ♦ 2.5k
Status: New
Handle: @st.ph.n10041
Reputation: 2450
Email: t**********@temple.edu
Joined: 16 months ago
Last seen: 19 months ago
Location: Philadelphia, PA

Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
Votes
0
Replies
2.5k
Views
Comment: C: Using trimmomatic on multiple single-end read files
17 months ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
147
Views
Comment: C: Plotting Bar charts in R
17 months ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
163
Views
Answer: A: Writing a bash loop to convert sams to bams
18 months ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
234
Views
Comment: C: Trouble with BLAST using Biopython
18 months ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
223
Views
Answer: A: Split comma seperated list of GO terms into multiple rows and maintain gene iden
18 months ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
305
Views
Comment: C: Mapping both PE reads and Single-end reads into transcriptome
2.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
424
Views
Comment: C: BioPython local blast different results than blast+ local blast
2.3 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
1.4k
Views
Comment: C: tab to fasta file conversion
2.3 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
296
Views
Comment: C: changing the position of a column from a file to another in perl
2.3 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
812
Views
Comment: C: Batch rename *fastq.gz files using regular expression
2.3 years ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
812
Views
Comment: C: Batch rename *fastq.gz files using regular expression
2.3 years ago
st.ph.n ♦ 2.5k
4
Votes
1
Reply
812
Views
Answer: A: Batch rename *fastq.gz files using regular expression
2.3 years ago
st.ph.n ♦ 2.5k
2
Votes
0
Replies
637
Views
Answer: A: headers from multifasta files
2.5 years ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
654
Views
Comment: C: Finding pairwise alignment between two multifasta files for similarity search
2.5 years ago
st.ph.n ♦ 2.5k
2
Votes
0
Replies
411
Views
Comment: C: downloading 1000 genomes project bam files in the background
2.5 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
236
Views
Comment: C: Translating Plant DNA to protein
2.5 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
592
Views
Comment: C: help in converting a table
2.6 years ago
st.ph.n ♦ 2.5k
2
Votes
0
Replies
466
Views
Comment: C: Removing a chromosome from a fasta file
2.6 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
592
Views
Comment: C: help in converting a table
2.6 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
592
Views
Comment: C: help in converting a table
2.6 years ago
st.ph.n ♦ 2.5k
1
Vote
2
Replies
592
Views
Answer: A: help in converting a table
2.6 years ago
st.ph.n ♦ 2.5k
2
Votes
0
Replies
741
Views
Comment: C: changing header name in fasta file
2.6 years ago
st.ph.n ♦ 2.5k
0
Votes
2
Replies
464
Views
Comment: C: how to separate/split numbers
2.6 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
464
Views
Comment: C: how to separate/split numbers
2.6 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
464
Views
Answer: A: how to separate/split numbers
2.6 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
449
Views
Comment: C: extract postion motif from fasta file
2.6 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
2.4k
Views
Comment: C: blast using python
2.7 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
867
Views
Comment: C: Any ideas on converting IUPAC ambiguity codes in a fasta file
2.7 years ago
st.ph.n ♦ 2.5k
2
Votes
1
Reply
867
Views
Answer: A: Any ideas on converting IUPAC ambiguity codes in a fasta file
2.7 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
1.3k
Views
Comment: C: Rename FASTA files according to FASTA file header
2.7 years ago
st.ph.n ♦ 2.5k
2
Votes
1
Reply
1.3k
Views
Comment: C: Rename FASTA files according to FASTA file header
2.7 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
518
Views
Comment: C: split seq in fasta file in groups according to seq similarity?
2.7 years ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
443
Views
Comment: C: Comparing 2 Columns at once
2.7 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
518
Views
Comment: C: split seq in fasta file in groups according to seq similarity?
2.7 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
1.1k
Views
Comment: C: How to rename multiple file name
2.7 years ago
st.ph.n ♦ 2.5k
9
Votes
4
Replies
1.5k
Views
Get trace data for all four bases from ab1 file
ab1 sanger trace chromatogram
2.8 years ago
st.ph.n ♦ 2.5k • updated 2.8 years ago
sacha ♦ 1.7k
0
Votes
1
Reply
1.5k
Views
Comment: C: Get trace data for all four bases from ab1 file
2.8 years ago
st.ph.n ♦ 2.5k
4
Votes
0
Replies
704
Views
Answer: A: Binning fasta sequences by size?
2.8 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
574
Views
Comment: C: Python: grep the strings whiitn "[ ]"
2.8 years ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
923
Views
Comment: C: How Can I get a list of sequences in fasta format from the Blast output hits?
2.8 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
574
Views
Answer: A: Python: grep the strings whiitn "[ ]"
2.8 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
1.6k
Views
Comment: C: How to remove reads from fastq flle that match to a set of reads in my fasta fil
2.8 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
1.6k
Views
Comment: C: How to remove reads from fastq flle that match to a set of reads in my fasta fil
2.8 years ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
1.6k
Views
Comment: C: How to remove reads from fastq flle that match to a set of reads in my fasta fil
2.8 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
827
Views
Comment: C: Difficulty in python while loop
2.9 years ago
st.ph.n ♦ 2.5k
2
Votes
0
Replies
1.3k
Views
Answer: A: parsing fastq files in python
2.9 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
2.9k
Views
Answer: A: How to remove Bad Nucleotides represented by "N" from FASTA file by using UNIX?
2.9 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
2.9k
Views
Comment: C: How to remove Bad Nucleotides represented by "N" from FASTA file by using UNIX?
2.9 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
609
Views
Comment: C: Dual demultiplexing on illumina sequences
2.9 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
609
Views
Comment: C: Dual demultiplexing on illumina sequences
2.9 years ago
st.ph.n ♦ 2.5k
2
Votes
0
Replies
2.8k
Views
Answer: A: Find consensus sequence of several DNA sequences
2.9 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
555
Views
Comment: C: Trying to get a GREP of things...
2.9 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
555
Views
Comment: C: Trying to get a GREP of things...
2.9 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
735
Views
Comment: C: Help with Fastq-Tools Install
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
735
Views
Comment: C: Help with Fastq-Tools Install
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
775
Views
Comment: C: Fail running blastdb and blastn on my own computer
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
775
Views
Comment: C: Fail running blastdb and blastn on my own computer
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
775
Views
Comment: C: Fail running blastdb and blastn on my own computer
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
775
Views
Comment: C: Fail running blastdb and blastn on my own computer
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
775
Views
Comment: C: Fail running blastdb and blastn on my own computer
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
2
Replies
1.1k
Views
Comment: C: installing bwa for linux 32 bits
3.0 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
390
Views
Answer: A: Write List of subject ID numbers to a new text file(s)
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
574
Views
Comment: C: Looking for Zebrafish v10 multiple genome alignment or phastCons track
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
1.6k
Views
Comment: C: Extract Sequence From Fasta and remove some characters before printing
3.0 years ago
st.ph.n ♦ 2.5k
2
Votes
1
Reply
1.6k
Views
Answer: A: Extract Sequence From Fasta and remove some characters before printing
3.0 years ago
st.ph.n ♦ 2.5k
2
Votes
1
Reply
981
Views
Comment: C: For loop script
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
621
Views
Comment: C: Set up a blast remote server
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
621
Views
Answer: A: Set up a blast remote server
3.0 years ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
766
Views
Answer: A: How to retrieve rows from OTU table
3.0 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
550
Views
Answer: A: Extract the targeted txt using python
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
692
Views
Comment: C: Remove lines of BLAST output based on two criteria
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
1.4k
Views
Answer: A: VCF files examples
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
742
Views
Comment: C: transcript and fasta sequence
3.0 years ago
st.ph.n ♦ 2.5k
2
Votes
1
Reply
552
Views
Comment: C: added missing bases at the beginning of a sequences
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
762
Views
Comment: C: how to make short custom reference sequence to use in RNA-seq alignment
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
6.5k
Views
Comment: C: Extraction of first sequences from a big fasta file
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
762
Views
Comment: C: how to make short custom reference sequence to use in RNA-seq alignment
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
762
Views
Comment: C: how to make short custom reference sequence to use in RNA-seq alignment
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
641
Views
Comment: C: blastn blastdbcheck errors
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
584
Views
Comment: C: Best Blast Hits from Tabular Outputs in Multiple files
3.0 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
783
Views
Comment: C: Error of Trinity Abundance estimation using RSEM
3.0 years ago
st.ph.n ♦ 2.5k
3
Votes
0
Replies
783
Views
Answer: A: Error of Trinity Abundance estimation using RSEM
3.0 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
505
Views
Comment: C: How to manage a database of sequences
3.1 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
985
Views
Comment: C: What does the "N" column mean of the TBLASTX output?
3.1 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
1.3k
Views
Comment: C: NGS DATA ANALYSIS
3.1 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
731
Views
Answer: A: RunningTBLASTN many times with python
3.1 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
1000
Views
Comment: C: How to limit/filter BLAST results using NcbiblastnCommandline
3.1 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
572
Views
Comment: C: conditional replacing rows with 9
3.1 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
1.6k
Views
Comment: C: How to Run the Script for Extracting Splice Sites from the Gene Annotation File
3.1 years ago
st.ph.n ♦ 2.5k
0
Votes
1
Reply
989
Views
Comment: C: Best Alignment tool of Denovo assembly Results.
3.1 years ago
st.ph.n ♦ 2.5k
2
Votes
1
Reply
553
Views
Answer: A: Iterating over different variables in bash script
3.1 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
553
Views
Comment: C: Iterating over different variables in bash script
3.1 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
629
Views
Comment: C: Genomics book for a computer scientist
3.1 years ago
st.ph.n ♦ 2.5k
2
Votes
0
Replies
1.2k
Views
Comment: C: Convert a FASTA Amino Acid Sequence to RNA (Reverse Central Dogma)
3.1 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
1.2k
Views
Comment: C: perl script for concatenating (multiple fasta sequences in a single file), creat
3.1 years ago
st.ph.n ♦ 2.5k
6
Votes
1
Reply
1.2k
Views
Answer: A: perl script for concatenating (multiple fasta sequences in a single file), creat
3.1 years ago
st.ph.n ♦ 2.5k
0
Votes
0
Replies
692
Views
Comment: C: Trimming local GB file with Biopython
3.1 years ago
st.ph.n ♦ 2.5k
2
Votes
1
Reply
572
Views
Answer: A: conditional replacing rows with 9
3.1 years ago
st.ph.n ♦ 2.5k
1
Vote
1
Reply
692
Views
Comment: C: Trimming local GB file with Biopython
3.1 years ago
st.ph.n ♦ 2.5k
1
Vote
0
Replies
2.7k
Views
Comment: C: Split the multiple sequences file into a separate files
3.1 years ago
st.ph.n ♦ 2.5k
Powered by the version 2.3.1