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Showing : vcftools • reset
1
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10
Replies
124
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How to apply vcftools --diff to identify vcf-specific variants/records
4 months ago Shicheng Guo ♦ 7.5k • updated 4 months ago Istvan Albert 80k
0
Votes
0
Replies
64
Views
Linkage disequilibrium from multi-sample vcf file
4 months ago felipead66 • 30 • updated 4 months ago RamRS 21k
3
Votes
1
Reply
83
Views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
4 months ago GabrielMontenegro • 520
2
Votes
3
Replies
133
Views
Replace missing SNPs of one individual with reference alleles in a VCF file
4 months ago amitgourav.ghosh12 • 50 • updated 4 months ago zx8754 7.5k
33
Votes
9
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9.0k
Views
How To Separate Snp Variants From Indel Variants In The Same Vcf File
8.5 years ago Jianfengmao • 310 • updated 4 months ago rodd • 40
3
Votes
4
Replies
120
Views
vcftools Warning: Expected at least 2 parts in FORMAT entry
4 months ago Zoey Zou • 30
1
Vote
0
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85
Views
vcftools counts output not written to file
5 months ago spider_monkey • 10
1
Vote
6
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959
Views
Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
19 months ago JSEM • 20 • updated 5 months ago seta ♦ 1.2k
0
Votes
1
Reply
171
Views
Tajima's D equation - VCFtools
5 months ago bwczech • 70
0
Votes
4
Replies
194
Views
BCF Tools Filter on 1000Genomes Annotation
6 months ago jon.klonowski • 10
0
Votes
5
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214
Views
How to turn current VCF into a VCF with genotype and rsID in same file
6 months ago austinkjensen5 • 0 • updated 6 months ago Kevin Blighe 43k
6
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5
Replies
4.6k
Views
Merge vcf files from Multiple Samples
5.5 years ago Ron • 950 • updated 6 months ago Biostar 20
6
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3
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2.4k
Views
How to add trio information to VCF or PED format (to compute Mendel error in Plink)
2.6 years ago olavur • 80 • updated 6 months ago Biostar 20
0
Votes
0
Replies
179
Views
How to detect outliers from either (a) SNP-Fst or (b) Window-Fst distributions?
6 months ago serpalma.v • 20 • updated 6 months ago h.mon 25k
2
Votes
1
Reply
1.2k
Views
Add rsid to LD output from vcftools
4.0 years ago jfertaj • 90 • updated 7 months ago zx8754 7.5k
1
Vote
2
Replies
264
Views
Filtering SNPS by minimum LD value in bcftools?
7 months ago RNAseqer • 110
0
Votes
2
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198
Views
VCFTOOLS won't read my vcf file
7 months ago wruzic1 • 0
0
Votes
3
Replies
238
Views
Splitting .vcf file
7 months ago F ♦ 3.4k
0
Votes
5
Replies
658
Views
How to extract proxy SNPs using 1000G vcf for a list of SNPs
7 months ago janhuang.cn • 150 • updated 7 months ago chrchang523 5.2k
12
Votes
3
Replies
23k
Views
Convert VCFf file to plink ped/map format while filtering the SNPs
5.1 years ago roll • 280 • updated 7 months ago hakimeazarafra • 0
1
Vote
3
Replies
433
Views
Allele frequency visualization
10 months ago jaafari.omid • 40 • updated 7 months ago msimmer92 • 180
4
Votes
14
Replies
303
Views
VCF file filtration
8 months ago jaafari.omid • 40
0
Votes
1
Reply
464
Views
How vcftools calculate Fst value?
8 months ago seta ♦ 1.2k
0
Votes
1
Reply
1.1k
Views
vcftool negative relatedness values for family members
3.3 years ago marcusanaymik • 10 • updated 8 months ago Biostar 20
1
Vote
2
Replies
999
Views
"Error: --recode 23 cannot be used with multi-character allele names." when converting VCF to 23andme
2.4 years ago beneficii • 60 • updated 8 months ago nuria.mauri • 0
4
Votes
4
Replies
1.9k
Views
How to convert .vcf files into .csv?
2.5 years ago feng9oly • 0 • updated 9 months ago Biostar 20
5
Votes
7
Replies
1.3k
Views
Extracting certain columns from VCF file
16 months ago gradstudentNew • 10 • updated 9 months ago zx8754 7.5k
3
Votes
2
Replies
278
Views
Filtering VCFs and Phasing
9 months ago miles.thorburn • 80
0
Votes
1
Reply
510
Views
VCFtools calculate SNP density
10 months ago christinachavez • 0 • updated 10 months ago ashishbansal12300 • 0
2
Votes
3
Replies
2.5k
Views
Is the heterozygosity flag (--het) in vcftools calculate observed and expected heterozygosity?
2.2 years ago ahmedaljumiliy • 20 • updated 10 months ago Kevin Blighe 43k
1
Vote
7
Replies
2.0k
Views
vcf-subset error: "Wrong number of fields" in vcf file
4.2 years ago Lylthera • 0 • updated 10 months ago zx8754 7.5k
3
Votes
7
Replies
264
Views
Count variants between two samples within a multi-sample VCF
10 months ago rc16955 • 60 • updated 10 months ago chrchang523 5.2k
4
Votes
2
Replies
326
Views
split vcf by individual
10 months ago sonia.olaechea • 90 • updated 10 months ago Paul ♦ 1.3k
14
Votes
5
Replies
13k
Views
How to extract sample id using bcftools or vcftools
4.5 years ago xinhui.wang • 160 • updated 11 months ago zx8754 7.5k
12
Votes
7
Replies
11k
Views
6 follow
How To Create A Venn Diagram Of Sample1.Vcf, Sample2.Vcf And Sample1&2(Union).Vcf Files
7.7 years ago Deniz • 50 • updated 11 months ago zx8754 7.5k
2
Votes
3
Replies
1.3k
Views
Split a large VCF into user defined regions
3.0 years ago zelia.worman • 0 • updated 11 months ago zx8754 7.5k
7
Votes
7
Replies
5.8k
Views
Most effective way to merge individual VCF files into VCF files merged by chromosome
5.4 years ago vlaufer • 260 • updated 11 months ago Biostar 20
2
Votes
5
Replies
804
Views
vcftools --TajimaD in sliding windows
11 months ago sonia.olaechea • 90
12
Votes
2
Replies
874
Views
Tutorial: Fast LD computation from VCF files using tomahawk
11 months ago rmf • 630
4
Votes
5
Replies
476
Views
How do I use vcftools to filter by variant ID OR variant position?
11 months ago jwhite007 • 10 • updated 11 months ago Pierre Lindenbaum 120k
324 results • Page 1 of 9
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New test post with the AJAX system
Answer: Markdown
Markdown
A: Which Are The Best Programming Languages For A Bioinformatician?
A: Which Are The Best Programming Languages For A Bioinformatician?
Answer: Which Are The Best Programming Languages For A Bioinformatician?
how do I run this recipe
C: How to apply vcftools --diff to identify vcf-specific variants/records
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Recent Replies
Comment: " testing dfg " by RamRS 21k
Testing highlighting functionality. Using `<span style="background-color: #FFFF00">`: <span style="background-color: #FFFF00">Span trial</…
Comment: " testing dfg " by RamRS 21k
Testing <u>underline</u> functionality.
Answer: Which Are The Best Programming Languages For A Bioinformatician? by Anna • 0
I could recommend you this research - https://www.romexsoft.com/blog/aws-hipaa-compliance-best-practices-checklist/
Comment: " testing dfg " by RamRS 21k
Testing comment with parentheses in URL: (this URL: https://www.ncbi.nlm.nih.gov/search/all/?term=BRCA1%20AND%20(Human%20OR%20Mouse))
Comment: get gene biotype for hg38 refseq by Natay Aberra 0
test the bumping
Comment: get gene biotype for hg38 refseq by genomax 68k
http://test.biostars.org/accounts/profile/2/ http://test.biostars.org/p/34/
Comment: New test post with the AJAX system by Natay Aberra 0
Yeah we will probably end up doing that.
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/accounts/profile/18713/ http://test.biostars.org/p/p371267/#p371295 test the bumping
Comment: Markdown by Natay Aberra 0
http://test.biostars.org/p/p371285/ http://test.biostars.org/accounts/profile/user-2/
Comment: New test post with the AJAX system by genomax 68k
Checking to see if this comment bumps the thread to top.
Comment: Markdown by genomax 68k
http://test.biostars.org/p/p371285/
Comment: Markdown by genomax 68k
@nba5048: Why is the original post showing up in separate sections? No way to use old style reference to users: http://test.biostars.org/a…
Comment: Markdown by Natay Aberra 0
Check your biostar messages, You did get a notification.
Comment: Markdown by ATpoint 17k
Test image: ![enter image description here][1] [1]: http://oi66.tinypic.com/33kdnjt.jpg
Comment: Markdown by ATpoint 17k
Nope, no notification.
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