Biostar Beta. Not for public use.
Limit to: all time
all time today this week this month this year
318 results • Page 1 of 7
Sort by: Rank
Rank Views Votes Replies
Showing : vcftools • reset
1
Vote
10
Replies
420
Views
How to apply vcftools --diff to identify vcf-specific variants/records
vcftools --diff --diff-site
15 months ago
Shicheng Guo ♦ 7.5k • updated 15 months ago
Istvan Albert 87k
0
Votes
0
Replies
102
Views
Linkage disequilibrium from multi-sample vcf file
ld vcf snpeff vcftools
15 months ago
felipead66 • 30 • updated 15 months ago
RamRS 21k
3
Votes
1
Reply
137
Views
Exclude sites on the basis of the proportion of missing data using BCFTOOLS
genome vcf vcftools bcftools
15 months ago
GabrielMontenegro • 520
2
Votes
3
Replies
188
Views
Replace missing SNPs of one individual with reference alleles in a VCF file
SNP bcftools VCFtools sequencing
16 months ago
amitgourav.ghosh12 • 50 • updated 16 months ago
zx8754 7.5k
33
Votes
9
Replies
9.0k
Views
How To Separate Snp Variants From Indel Variants In The Same Vcf File
vcf vcftools
9.5 years ago
Jianfengmao • 310 • updated 16 months ago
rodd • 40
3
Votes
4
Replies
164
Views
vcftools Warning: Expected at least 2 parts in FORMAT entry
vcftools
16 months ago
Zoey Zou • 30
1
Vote
0
Replies
120
Views
vcftools counts output not written to file
vcftools vcf frequency counts SNP
16 months ago
spider_monkey • 10
1
Vote
6
Replies
1.0k
Views
Updating allele frequency (AF) and minor allele frequency (MAF) INFO fields in .vcf
vcf vcftools imputation QC SNP
2.6 years ago
JSEM • 20 • updated 16 months ago
seta ♦ 1.2k
0
Votes
1
Reply
198
Views
Tajima's D equation - VCFtools
tajima vcftools
17 months ago
bwczech • 70
0
Votes
4
Replies
243
Views
BCF Tools Filter on 1000Genomes Annotation
bcftools vcftools annotation filter
17 months ago
jon.klonowski • 10
0
Votes
5
Replies
260
Views
How to turn current VCF into a VCF with genotype and rsID in same file
vcf bcftools vcftools
17 months ago
austinkjensen5 • 0 • updated 17 months ago
Kevin Blighe 43k
6
Votes
5
Replies
4.6k
Views
Merge vcf files from Multiple Samples
vcf vcftools
6.4 years ago
Ron • 950 • updated 17 months ago
Biostar 20
6
Votes
3
Replies
2.4k
Views
How to add trio information to VCF or PED format (to compute Mendel error in Plink)
plink vcftools SNP
3.5 years ago
olavur • 80 • updated 17 months ago
Biostar 20
0
Votes
0
Replies
217
Views
How to detect outliers from either (a) SNP-Fst or (b) Window-Fst distributions?
Fst vcftools
18 months ago
serpalma.v • 20 • updated 18 months ago
h.mon 25k
2
Votes
1
Reply
1.2k
Views
Add rsid to LD output from vcftools
vcf SNP LD vcftools
4.9 years ago
jfertaj • 90 • updated 18 months ago
zx8754 7.5k
1
Vote
2
Replies
307
Views
Filtering SNPS by minimum LD value in bcftools?
bcftools vcftools vcf LD r2
18 months ago
RNAseqer • 110
0
Votes
2
Replies
225
Views
VCFTOOLS won't read my vcf file
snp vcftools vcf
18 months ago
wruzic1 • 0
0
Votes
3
Replies
287
Views
Splitting .vcf file
WGS vcftools
18 months ago
F ♦ 3.4k
0
Votes
5
Replies
696
Views
How to extract proxy SNPs using 1000G vcf for a list of SNPs
plink proxy SNP 1000G vcftools
19 months ago
janhuang.cn • 150 • updated 19 months ago
chrchang523 5.2k
12
Votes
3
Replies
23k
Views
Convert VCFf file to plink ped/map format while filtering the SNPs
vcftools plink ped map
6.0 years ago
roll • 280 • updated 19 months ago
hakimeazarafra • 0
1
Vote
3
Replies
471
Views
Allele frequency visualization
snp R stacks vcftools
21 months ago
jaafari.omid • 40 • updated 19 months ago
msimmer92 • 180
4
Votes
14
Replies
361
Views
VCF file filtration
snp WGS VCF bcftools vcftools
19 months ago
jaafari.omid • 40
0
Votes
1
Reply
497
Views
How vcftools calculate Fst value?
Fst vcftools populations
19 months ago
seta ♦ 1.2k
0
Votes
1
Reply
1.2k
Views
vcftool negative relatedness values for family members
vcftools kinship qc pedigree
4.3 years ago
marcusanaymik • 10 • updated 19 months ago
Biostar 20
1
Vote
2
Replies
1.0k
Views
"Error: --recode 23 cannot be used with multi-character allele names." when converting VCF to 23andme
vcftools plink1.9
3.3 years ago
beneficii • 60 • updated 20 months ago
nuria.mauri • 0
4
Votes
4
Replies
1.9k
Views
How to convert .vcf files into .csv?
vcf csv sql python vcftools
3.4 years ago
feng9oly • 0 • updated 20 months ago
Biostar 20
5
Votes
7
Replies
1.3k
Views
Extracting certain columns from VCF file
vcf vcftools genotype exome question
2.3 years ago
gradstudentNew • 10 • updated 20 months ago
zx8754 7.5k
3
Votes
2
Replies
310
Views
Filtering VCFs and Phasing
ShapeIt VCFtools filtering VCF SNP
21 months ago
miles.thorburn • 80
0
Votes
1
Reply
540
Views
VCFtools calculate SNP density
vcftools snp density bioinformatics vcf snp
21 months ago
christinachavez • 0 • updated 21 months ago
ashishbansal12300 • 0
2
Votes
3
Replies
2.5k
Views
Is the heterozygosity flag (--het) in vcftools calculate observed and expected heterozygosity?
vcftools vcf
3.1 years ago
ahmedaljumiliy • 20 • updated 21 months ago
Kevin Blighe 43k
1
Vote
7
Replies
2.0k
Views
vcf-subset error: "Wrong number of fields" in vcf file
vcf-subset vcftools variant 1000 genomes vcf
5.1 years ago
Lylthera • 0 • updated 21 months ago
zx8754 7.5k
3
Votes
7
Replies
292
Views
Count variants between two samples within a multi-sample VCF
vcf VCFTools
22 months ago
rc16955 • 60 • updated 22 months ago
chrchang523 5.2k
4
Votes
2
Replies
360
Views
split vcf by individual
vcftools vcf-subset SNP vcf
22 months ago
sonia.olaechea • 90 • updated 22 months ago
Paul ♦ 1.3k
14
Votes
5
Replies
13k
Views
How to extract sample id using bcftools or vcftools
SNP vcf bcftools vcftools
5.4 years ago
xinhui.wang • 160 • updated 22 months ago
zx8754 7.5k
12
Votes
7
Replies
11k
Views
How To Create A Venn Diagram Of Sample1.Vcf, Sample2.Vcf And Sample1&2(Union).Vcf Files
vcftools mpileup
8.6 years ago
Deniz • 50 • updated 22 months ago
zx8754 7.5k
2
Votes
3
Replies
1.3k
Views
Split a large VCF into user defined regions
sequencing vcf vcftools
4.0 years ago
zelia.worman • 0 • updated 22 months ago
zx8754 7.5k
7
Votes
7
Replies
5.9k
Views
Most effective way to merge individual VCF files into VCF files merged by chromosome
VCF VCFmerge VCFtools merge Plinkseq
6.4 years ago
vlaufer • 260 • updated 22 months ago
Biostar 20
2
Votes
5
Replies
830
Views
vcftools --TajimaD in sliding windows
vcftools SNP Tajima's D
22 months ago
sonia.olaechea • 90
12
Votes
2
Replies
946
Views
Tutorial: Fast LD computation from VCF files using tomahawk
vcf vcftools bcftools ld snp Tutorial
22 months ago
rmf • 630
4
Votes
5
Replies
498
Views
How do I use vcftools to filter by variant ID OR variant position?
vcftools
23 months ago
jwhite007 • 10 • updated 23 months ago
Pierre Lindenbaum 120k
0
Votes
4
Replies
281
Views
NCBI Remap Issue
remapping vcftools GWAS genome SNP
23 months ago
f.abbondanza94 • 0
1
Vote
7
Replies
839
Views
vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix.
vcftools vcf
23 months ago
mayara.salvian • 10 • updated 23 months ago
Pierre Lindenbaum 120k
1
Vote
11
Replies
452
Views
vcftools vcf-merge error
vcftools vcf-merge
23 months ago
biogirl • 170
3
Votes
2
Replies
925
Views
VCFtools version for LD calculations specifying bin size
vcftools LD
2.0 years ago
Stephanie • 30 • updated 2.0 years ago
Kevin Blighe 43k
1
Vote
2
Replies
1.4k
Views
using vcftools to add gene name to vcf file
vcftools
4.6 years ago
bioguy24 • 190 • updated 2.0 years ago
RamRS 21k
1
Vote
2
Replies
1.3k
Views
add gene name from bed file to vcf in vcftools
vcftools
4.6 years ago
bioguy24 • 190 • updated 2.0 years ago
RamRS 21k
1
Vote
3
Replies
572
Views
bcftools: DP filter based on chromosome and sex
bcftools wgs samtools vcftools pyvcf
2.0 years ago
bsmith030465 • 140 • updated 2.0 years ago
Pierre Lindenbaum 120k
0
Votes
4
Replies
353
Views
Merging variant replicates rather than filtering
GWAS Plink vcftools
2.1 years ago
dylkot • 0 • updated 2.1 years ago
chrchang523 5.2k
7
Votes
14
Replies
5.7k
Views
Filtering Imputation output: how to filter on a VCF INFO field
imputation filtering minimac3 plink vcftools
4.1 years ago
mmagoo6 • 50 • updated 2.1 years ago
natalia.han • 0
5
Votes
4
Replies
653
Views
VCFtools. Get rid of DS:GP phased genotypes while keeping GT and remaining fields
VCFtools
2.1 years ago
Mr Locuace • 90
318 results • Page 1 of 7
Recent Votes
Comment: Testing image upload
Testing spam
Random SNPs simulation?
How do play audio (playsound) in background of Python script?
A: Random SNPs simulation?
Biostar Forum Posting Guidelines
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Answer: How to install CRISPRCasFinder under Ubuntu without having administrator rights?
Recent Locations • All
Charlestown, Nevis, USA, 6 hours ago
Brighton, 9 hours ago
University Park, 9 hours ago
Vietnam, 1 day ago
vietnam, 3 days ago
Recent Awards • All
Appreciated to lieven.sterck 5.1k
Commentator to maegsul • 140
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to Sej Modha 4.2k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Appreciated to finswimmer 11k
Recent Replies
Answer: Best Graphics Gallery Or Blogs For Bioinformatics Use by sanjusaranya456 • 0
Ai - Blue Prism Training in Chennai | Certification | Online Courses AI is on the tip of everyone's tongue when they talk about the futu…
Answer: Best Graphics Gallery Or Blogs For Bioinformatics Use by ramya • 0
thank you for the posts... https://www.acte.in/android-training-in-chennai https://www.acte.in/android-training-in-chennai https://www.a…
Answer: Best Graphics Gallery Or Blogs For Bioinformatics Use by joachim • 0
I have created a free guide on graphics in R. You can check it out here: https://statisticsglobe.com/graphics-in-r
Comment: Testing mathjax by Natay Aberra 0
Testing mathjax with inline comment $ x -1 $
Answer: Testing mathjax by Natay Aberra 0
$ f(x) = 5\Pi $
Answer: Biostar Forum Posting Guidelines by jessica • 0
I'm glad and so happy I found this forum release, I couldn't find any knowledge on this topic prior to. I think this is an helpful …
Answer: Biostar Forum Posting Guidelines by jessica • 0
I'm glad and so happy I found this forum release, I couldn't find any knowledge on this topic prior to. I think this is an helpful post and…
Answer: Biostar Forum Posting Guidelines by jessica • 0
I am impressed by the information that you have on this forum content and This information is magnificent so wonderful release. I understan…
Answer: How do play audio (playsound) in background of Python script? by smileykhan1212 • 0
[Tableau course][1] is a well-rounded program that covers various concepts such as, Tableau basics, numerous Tableau products, different vi…
Comment: Testing image upload by RamRS 21k
At laaaaassst! My greatest invention is comp-a-leet!
Answer: Testing image upload by Stephan11 • 0
Great images. Regards: [Law essay help][1] [1]: https://www.essaycorp.co.uk/law-essay-writing/
Answer: Tools to do a linear or logistic regression of DEG by priyanka • 0
Very interesting to read this article.I would like to thank you for the efforts you had made for writing this awesome article. This article…
Answer: How to open a .tabular file in R or excel? by gerryjonshone • 0
Searching for Canon Pixma Printer Troubleshooting solutions? Need you bother? Reach our [Canon Printer Troubleshooting][1] helpdesk for ins…
Comment: this is a test post by RamRS 21k
@Natay-Aberra Natay, see how the first two lines are omitted for display: ``` <?xml version="1.0" encoding="UTF-8" ?> <!DOCTYPE Docume…
Answer: this is a test post by RamRS 21k
Testing XML within a code block that did not work in Biostars classic (see https://www.biostars.org/p/448891/#448897, where I had to use a …
Powered by the version 2.3.1